Wall clock time and date at job start Tue Mar 31 2020 12:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48497 * 109.47437 * 264.99945 * 3 2 1 5 5 H 1.48509 * 109.46959 * 145.00066 * 3 2 1 6 6 H 1.48503 * 109.47198 * 25.00490 * 3 2 1 7 7 C 1.38811 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00524 * 184.86529 * 7 2 1 9 9 N 1.36937 * 119.99938 * 4.86700 * 7 2 1 10 10 C 1.47426 * 125.64814 * 4.13839 * 9 7 2 11 11 C 1.54910 * 104.83111 * 204.09213 * 10 9 7 12 12 C 1.55159 * 101.58305 * 322.99086 * 11 10 9 13 13 H 1.09005 * 110.71760 * 276.96284 * 12 11 10 14 14 N 1.46897 * 110.72113 * 153.86839 * 12 11 10 15 15 C 1.46904 * 111.00091 * 179.53168 * 14 12 11 16 16 C 1.53231 * 109.33952 * 172.74365 * 15 14 12 17 17 N 1.47083 * 108.52387 * 53.82856 * 16 15 14 18 18 C 1.34772 * 120.88052 * 128.83491 * 17 16 15 19 19 O 1.21690 * 119.99967 * 186.31330 * 18 17 16 20 20 C 1.46728 * 120.00271 * 6.31262 * 18 17 16 21 21 C 1.36337 * 126.64560 * 187.16819 * 20 18 17 22 22 N 1.33688 * 107.45441 * 179.97438 * 21 20 18 23 23 C 1.30613 * 108.99367 * 359.97438 * 22 21 20 24 24 O 1.33661 * 109.15828 * 359.75321 * 23 22 21 25 25 C 1.47070 * 118.23672 * 308.81515 * 17 16 15 26 26 C 1.46899 * 111.00337 * 55.22690 * 14 12 11 27 27 C 1.47023 * 125.64791 * 183.82973 * 9 7 2 28 28 H 0.96993 * 119.99881 * 359.97438 * 1 2 3 29 29 H 1.09002 * 110.36437 * 322.92757 * 10 9 7 30 30 H 1.08995 * 110.36928 * 85.25450 * 10 9 7 31 31 H 1.09002 * 111.00659 * 81.06609 * 11 10 9 32 32 H 1.08994 * 111.00504 * 204.87827 * 11 10 9 33 33 H 1.09000 * 109.49118 * 292.70340 * 15 14 12 34 34 H 1.08998 * 109.49076 * 52.78244 * 15 14 12 35 35 H 1.08998 * 109.63239 * 294.11934 * 16 15 14 36 36 H 1.09002 * 109.62683 * 173.54007 * 16 15 14 37 37 H 1.08003 * 126.27219 * 359.97438 * 21 20 18 38 38 H 1.08009 * 125.42227 * 179.97438 * 23 22 21 39 39 H 1.09005 * 109.63112 * 291.47216 * 25 17 16 40 40 H 1.08999 * 109.63287 * 170.89169 * 25 17 16 41 41 H 1.09003 * 109.49164 * 307.21556 * 26 14 12 42 42 H 1.08995 * 109.49302 * 67.26818 * 26 14 12 43 43 H 1.08997 * 109.88276 * 298.39382 * 27 9 7 44 44 H 1.09001 * 109.88472 * 59.55672 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6034 1.9855 -1.3947 5 1 3.4909 1.4729 0.8031 6 1 1.3988 2.6809 0.5918 7 6 2.0103 -1.2021 -0.0005 8 1 3.0873 -1.2039 0.0788 9 7 1.3293 -2.3859 -0.1017 10 6 -0.1246 -2.5264 -0.3017 11 6 -0.4682 -3.9290 0.2589 12 6 0.7785 -4.7487 -0.1668 13 1 0.6826 -5.0890 -1.1979 14 7 0.9852 -5.8878 0.7374 15 6 2.1580 -6.6747 0.3333 16 6 2.4460 -7.7392 1.3972 17 7 1.2198 -8.5203 1.6206 18 6 1.2396 -9.8671 1.5747 19 8 0.1990 -10.4937 1.6471 20 6 2.5159 -10.5778 1.4374 21 6 2.6849 -11.9164 1.2414 22 7 3.9996 -12.1485 1.1709 23 6 4.6390 -11.0186 1.3135 24 8 3.7533 -10.0306 1.4740 25 6 -0.0283 -7.7926 1.8957 26 6 -0.2189 -6.7259 0.8122 27 6 1.9278 -3.7271 -0.0352 28 1 -0.4849 0.8400 0.0004 29 1 -0.6599 -1.7550 0.2519 30 1 -0.3686 -2.4716 -1.3626 31 1 -0.5666 -3.9027 1.3441 32 1 -1.3727 -4.3238 -0.2038 33 1 1.9587 -7.1600 -0.6222 34 1 3.0211 -6.0165 0.2343 35 1 2.7466 -7.2560 2.3268 36 1 3.2417 -8.3982 1.0498 37 1 1.9004 -12.6541 1.1583 38 1 5.7126 -10.9008 1.3001 39 1 0.0345 -7.3144 2.8733 40 1 -0.8684 -8.4867 1.8779 41 1 -1.0795 -6.1048 1.0606 42 1 -0.3854 -7.2101 -0.1501 43 1 2.6375 -3.8572 -0.8521 44 1 2.4324 -3.8608 0.9217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046049805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:57 Heat of formation + Delta-G solvation = 27.598683 kcal Electronic energy + Delta-G solvation = -27278.380956 eV Core-core repulsion = 23426.380271 eV Total energy + Delta-G solvation = -3852.000684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.50894 -41.28961 -39.90525 -38.15939 -36.21347 -35.50891 -33.85008 -32.65135 -31.59570 -30.86101 -29.44283 -27.67147 -26.03643 -25.25708 -24.51542 -23.68820 -22.53299 -21.83816 -21.28682 -20.69526 -18.93161 -18.83561 -18.24383 -17.92027 -17.37163 -17.03984 -16.51392 -16.27225 -15.94884 -15.93525 -15.42853 -15.31540 -15.21391 -14.87069 -14.57521 -14.31741 -14.15922 -13.51563 -13.42416 -13.34577 -12.97025 -12.73912 -12.72799 -12.54565 -12.48194 -12.31461 -11.99785 -11.98823 -11.82611 -11.64239 -11.55955 -11.42557 -11.31019 -10.77932 -10.32004 -9.91056 -9.32288 -8.86480 -7.70714 -5.21730 -0.26120 1.29823 1.39886 1.48504 1.50663 1.58762 1.84609 1.94486 2.49789 2.79435 3.20696 3.34564 3.43003 3.68876 3.75141 3.83524 3.85446 3.97768 4.10176 4.17151 4.22374 4.28480 4.35846 4.42399 4.48859 4.56474 4.64534 4.71779 4.78841 4.82798 4.89660 4.96941 5.01891 5.08485 5.12940 5.23504 5.29921 5.48150 5.63136 5.83268 5.96239 6.05926 6.13687 6.38852 6.48310 6.75428 7.13349 7.80774 8.43685 9.25610 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.002639 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.736004 B =10608.090591 C =11439.708140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.269 1.269 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.624 5.624 10 C 0.138 3.862 11 C -0.116 4.116 12 C 0.089 3.911 13 H 0.045 0.955 14 N -0.530 5.530 15 C 0.042 3.958 16 C 0.111 3.889 17 N -0.601 5.601 18 C 0.606 3.394 19 O -0.553 6.553 20 C -0.127 4.127 21 C 0.054 3.946 22 N -0.527 5.527 23 C 0.224 3.776 24 O -0.186 6.186 25 C 0.122 3.878 26 C 0.045 3.955 27 C 0.147 3.853 28 H 0.247 0.753 29 H 0.090 0.910 30 H -0.017 1.017 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.200 0.800 38 H 0.306 0.694 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.034 0.966 43 H 0.020 0.980 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.183 -21.846 3.229 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.194 1.194 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.350 5.350 10 C 0.012 3.988 11 C -0.154 4.154 12 C -0.019 4.019 13 H 0.063 0.937 14 N -0.255 5.255 15 C -0.087 4.087 16 C -0.011 4.011 17 N -0.332 5.332 18 C 0.394 3.606 19 O -0.434 6.434 20 C -0.182 4.182 21 C -0.088 4.088 22 N -0.254 5.254 23 C 0.000 4.000 24 O -0.073 6.073 25 C 0.000 4.000 26 C -0.083 4.083 27 C 0.021 3.979 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.001 0.999 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.217 0.783 38 H 0.320 0.680 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.052 0.948 43 H 0.038 0.962 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.019 -22.277 3.669 23.643 hybrid contribution -0.202 1.411 -1.015 1.750 sum 6.818 -20.866 2.654 22.111 Atomic orbital electron populations 1.69892 1.06229 1.24884 1.58776 1.25631 0.96598 1.01000 1.02872 0.85049 0.77555 0.78913 0.77537 1.21432 1.19368 1.22023 1.19440 0.91227 0.83826 1.41999 0.90121 1.44745 1.04413 1.00899 1.84987 1.21995 0.85177 0.95724 0.95891 1.22863 0.96306 0.95253 1.01005 1.22400 0.96118 0.90027 0.93392 0.93684 1.61946 1.04354 1.08747 1.50485 1.22518 0.94643 0.95215 0.96317 1.22313 0.85803 0.92996 1.00008 1.48177 1.11869 1.04647 1.68545 1.16668 0.85512 0.81767 0.76641 1.90861 1.32119 1.67276 1.53155 1.22817 0.84172 0.94411 1.16778 1.23787 0.94213 0.93907 0.96922 1.70524 1.04829 1.29264 1.20823 1.29725 0.99362 0.78768 0.92151 1.84653 1.15085 1.38889 1.68715 1.21833 0.86043 0.93128 0.98996 1.22482 0.93698 0.94374 0.97795 1.21319 0.94227 0.84352 0.97958 0.94299 0.89285 0.99928 0.91212 0.90224 0.94694 0.88629 0.89382 0.86536 0.78287 0.67958 0.89362 0.88404 0.88280 0.94789 0.96238 0.94669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.11 10.04 21.65 0.22 -55.90 16 2 C -0.07 -3.88 5.47 84.86 0.46 -3.41 16 3 Si 0.98 45.27 29.56 68.60 2.03 47.29 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.24 -13.15 10.27 84.03 0.86 -12.29 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -32.04 3.39 -691.96 -2.35 -34.39 16 10 C 0.14 6.74 6.14 86.86 0.53 7.28 16 11 C -0.12 -4.20 5.12 31.99 0.16 -4.03 16 12 C 0.09 2.94 2.64 46.11 0.12 3.06 16 13 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 14 N -0.53 -13.96 4.45 -863.06 -3.84 -17.80 16 15 C 0.04 0.91 5.51 86.38 0.48 1.38 16 16 C 0.11 2.01 6.26 86.35 0.54 2.55 16 17 N -0.60 -12.74 3.01 -822.61 -2.48 -15.21 16 18 C 0.61 14.10 7.66 86.46 0.66 14.76 16 19 O -0.55 -15.89 16.36 -4.32 -0.07 -15.96 16 20 C -0.13 -2.42 6.80 24.05 0.16 -2.25 16 21 C 0.05 0.98 11.67 83.97 0.98 1.96 16 22 N -0.53 -8.49 11.26 -315.10 -3.55 -12.03 16 23 C 0.22 2.05 13.21 130.42 1.72 3.77 16 24 O -0.19 -2.55 7.46 -7.08 -0.05 -2.61 16 25 C 0.12 2.55 6.61 86.35 0.57 3.13 16 26 C 0.04 1.03 5.42 86.38 0.47 1.49 16 27 C 0.15 5.91 5.85 86.73 0.51 6.42 16 28 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.09 5.01 5.49 -2.39 -0.01 5.00 16 30 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 31 H 0.07 2.57 8.10 -2.39 -0.02 2.55 16 32 H 0.08 2.48 7.95 -2.39 -0.02 2.46 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 2.07 7.16 -2.39 -0.02 2.05 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.12 1.77 4.36 -10.30 -0.04 1.72 16 37 H 0.20 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.31 -0.91 8.06 -2.91 -0.02 -0.93 16 39 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.10 2.08 7.04 -2.39 -0.02 2.07 16 41 H 0.10 2.21 6.60 -2.39 -0.02 2.20 16 42 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.04 1.42 7.99 -2.39 -0.02 1.40 16 Total: -1.00 -72.65 349.43 -0.88 -73.53 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.98 Total: 9.27 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 8.24 Total: 23.81 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -12.00 Total: -135.33 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.12 Total: -18.56 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -72.65 -0.88 -73.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046049805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.128 kcal (2) G-P(sol) polarization free energy of solvation -72.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds