Wall clock time and date at job start Tue Mar 31 2020 12:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 110.88613 * 2 1 4 4 C 1.34781 * 120.00018 * 62.42116 * 3 2 1 5 5 O 1.21682 * 120.00132 * 5.10405 * 4 3 2 6 6 C 1.46759 * 119.99892 * 185.09794 * 4 3 2 7 7 C 1.36945 * 126.94092 * 185.83952 * 6 4 3 8 8 N 1.33565 * 107.86735 * 179.97438 * 7 6 4 9 9 C 1.30249 * 109.65315 * 359.97438 * 8 7 6 10 10 N 1.35179 * 108.96894 * 0.05829 * 9 8 7 11 11 C 1.46506 * 123.69773 * 179.88659 * 10 9 8 12 12 C 1.53474 * 108.12219 * 343.73804 * 11 10 9 13 13 O 1.43041 * 109.61344 * 48.15757 * 12 11 10 14 14 C 1.43433 * 114.05513 * 290.04332 * 13 12 11 15 15 C 1.55155 * 111.04122 * 236.09408 * 2 1 3 16 16 C 1.54318 * 102.94364 * 206.41141 * 15 2 1 17 17 N 1.47023 * 107.27231 * 22.18842 * 16 15 2 18 18 C 1.36941 * 125.64804 * 181.02262 * 17 16 15 19 19 H 1.07998 * 119.99538 * 180.02562 * 18 17 16 20 20 C 1.38806 * 119.99955 * 0.04308 * 18 17 16 21 21 N 1.31621 * 120.00271 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99820 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47132 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47070 * 120.00194 * 22 20 18 25 25 H 1.48502 * 109.46934 * 240.00227 * 22 20 18 26 26 C 1.47420 * 108.70238 * 1.06254 * 17 16 15 27 27 H 1.08999 * 109.47175 * 60.70580 * 1 2 3 28 28 H 1.08998 * 109.46782 * 180.70006 * 1 2 3 29 29 H 1.08996 * 109.47371 * 300.70095 * 1 2 3 30 30 H 0.96994 * 120.00109 * 242.42725 * 3 2 1 31 31 H 1.07996 * 126.06446 * 0.02562 * 7 6 4 32 32 H 1.09003 * 109.73447 * 224.08240 * 11 10 9 33 33 H 1.08995 * 109.73441 * 103.39828 * 11 10 9 34 34 H 1.08996 * 109.44942 * 288.10723 * 12 11 10 35 35 H 1.09001 * 109.44212 * 168.19751 * 12 11 10 36 36 H 1.08995 * 109.78846 * 169.21550 * 14 13 12 37 37 H 1.09004 * 109.78880 * 290.04908 * 14 13 12 38 38 H 1.09006 * 110.71693 * 324.77249 * 15 2 1 39 39 H 1.08992 * 110.71959 * 88.04226 * 15 2 1 40 40 H 1.08998 * 109.88307 * 262.77253 * 16 15 2 41 41 H 1.09002 * 109.88780 * 141.60695 * 16 15 2 42 42 H 0.96999 * 120.00247 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.36946 * 217.02680 * 26 17 16 44 44 H 1.09001 * 110.45939 * 94.75451 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7877 2.1910 1.0346 5 8 1.1948 1.7700 2.0102 6 6 2.2147 3.5942 0.9845 7 6 2.1215 4.5193 1.9900 8 7 2.6220 5.6710 1.5349 9 6 3.0226 5.5189 0.3049 10 7 2.7883 4.2442 -0.0791 11 6 3.1142 3.7230 -1.4089 12 6 3.3493 4.9163 -2.3450 13 8 4.2321 5.8513 -1.7185 14 6 3.6531 6.5468 -0.6057 15 6 2.0871 -0.8078 -1.2019 16 6 3.4684 -1.2732 -0.6950 17 7 3.4275 -1.2419 0.7743 18 6 4.4643 -1.5648 1.6086 19 1 4.3331 -1.5098 2.6792 20 6 5.6839 -1.9625 1.0783 21 7 5.8440 -2.0287 -0.2265 22 14 7.0983 -2.4024 2.2164 23 1 6.6646 -2.2467 3.6281 24 1 7.5070 -3.8098 1.9770 25 1 8.2476 -1.5008 1.9488 26 6 2.0853 -0.8061 1.2007 27 1 -0.3633 0.5028 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3634 0.5247 0.8836 30 1 2.5885 1.6832 -0.7446 31 1 1.7161 4.3477 2.9761 32 1 2.2856 3.1207 -1.7815 33 1 4.0168 3.1144 -1.3547 34 1 2.3977 5.4028 -2.5588 35 1 3.7941 4.5650 -3.2760 36 1 4.4286 7.0910 -0.0668 37 1 2.8921 7.2419 -0.9604 38 1 1.4482 -1.6635 -1.4207 39 1 2.1930 -0.1699 -2.0793 40 1 4.2433 -0.5985 -1.0588 41 1 3.6667 -2.2884 -1.0388 42 1 6.6963 -2.3063 -0.5971 43 1 2.1553 -0.1713 2.0840 44 1 1.4512 -1.6691 1.4039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046391880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:29 Heat of formation + Delta-G solvation = 24.239877 kcal Electronic energy + Delta-G solvation = -28393.429288 eV Core-core repulsion = 24541.282955 eV Total energy + Delta-G solvation = -3852.146333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.65743 -39.76392 -38.63505 -37.21884 -34.81086 -33.83452 -31.96553 -30.86437 -30.30355 -29.79484 -28.76557 -26.42448 -25.70289 -24.39716 -23.86385 -22.82397 -20.84637 -20.29236 -19.81065 -19.22329 -18.10861 -17.27953 -16.83795 -16.33645 -15.82569 -15.62371 -15.52536 -15.22705 -14.67088 -14.45952 -14.27797 -14.17297 -13.71507 -13.53635 -13.25655 -13.06267 -12.86685 -12.26554 -12.12029 -11.99216 -11.86253 -11.73531 -11.68718 -10.94787 -10.90997 -10.70862 -10.51673 -10.45346 -10.29175 -10.09959 -10.05161 -9.86527 -9.69363 -9.50464 -8.80773 -8.62812 -8.48011 -6.82862 -5.73575 -3.05147 1.25728 2.22414 2.70272 3.20380 3.25887 3.39309 3.45795 3.48186 3.50267 3.77401 3.99975 4.40625 4.49503 4.52442 4.54757 4.85778 4.93835 5.00734 5.14164 5.14561 5.22592 5.30192 5.41489 5.49459 5.55335 5.63275 5.83261 5.89548 6.02602 6.05091 6.24411 6.28840 6.29799 6.43513 6.51809 6.58249 6.77080 6.80652 7.04198 7.48428 7.49828 7.63723 7.77392 7.82191 8.23037 8.37419 9.21440 9.81282 10.46508 11.38840 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.004472 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.895870 B = 6259.608674 C = 6911.075237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.154 3.846 3 N -0.703 5.703 4 C 0.597 3.403 5 O -0.520 6.520 6 C -0.065 4.065 7 C 0.057 3.943 8 N -0.480 5.480 9 C 0.182 3.818 10 N -0.437 5.437 11 C 0.054 3.946 12 C 0.051 3.949 13 O -0.368 6.368 14 C 0.149 3.851 15 C -0.146 4.146 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.926 5.926 22 Si 0.910 3.090 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.129 3.871 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.391 0.609 31 H 0.187 0.813 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.250 0.750 43 H 0.061 0.939 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 14.529 -8.144 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.068 3.932 3 N -0.355 5.355 4 C 0.382 3.618 5 O -0.396 6.396 6 C -0.180 4.180 7 C -0.096 4.096 8 N -0.200 5.200 9 C -0.080 4.080 10 N -0.123 5.123 11 C -0.069 4.069 12 C -0.026 4.026 13 O -0.285 6.285 14 C 0.071 3.929 15 C -0.185 4.185 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.348 4.348 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.575 5.575 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.002 3.998 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.227 0.773 31 H 0.204 0.796 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.764 14.759 -7.258 18.637 hybrid contribution 0.855 -1.120 -0.181 1.421 sum -7.910 13.639 -7.439 17.433 Atomic orbital electron populations 1.21976 0.94140 1.02454 1.02111 1.21569 0.92591 0.80344 0.98732 1.45984 1.54064 1.13188 1.22259 1.16707 0.79348 0.82566 0.83138 1.90805 1.41878 1.75291 1.31615 1.21266 1.10813 0.95643 0.90302 1.22702 1.00737 0.86958 0.99179 1.69823 1.16280 1.26422 1.07434 1.24088 1.03946 0.86053 0.93909 1.45235 1.44764 1.10522 1.11732 1.23008 1.03942 0.99391 0.80558 1.23001 0.95730 0.88298 0.95580 1.88197 1.39297 1.55706 1.45296 1.21316 0.98565 0.89500 0.83536 1.23242 1.00740 0.98931 0.95588 1.21149 0.89722 0.99967 0.83902 1.44444 1.07844 1.78895 1.01704 1.19131 0.89303 1.37290 0.89080 0.90448 1.24753 0.97742 1.02032 0.96041 1.69946 1.24023 1.54312 1.09200 0.86056 0.82377 0.77701 0.79788 1.20466 1.21739 1.21849 1.21936 0.87525 0.94953 0.95364 0.93162 0.91433 0.91182 0.77298 0.79629 0.87665 0.87470 0.91297 0.85665 0.85266 0.89485 0.90559 0.92063 0.93869 0.93674 0.93933 0.92118 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.62 37.16 0.32 -1.84 16 2 C 0.15 2.66 0.82 -129.67 -0.11 2.55 16 3 N -0.70 -11.47 5.05 -46.89 -0.24 -11.70 16 4 C 0.60 10.49 7.20 -12.82 -0.09 10.39 16 5 O -0.52 -10.43 13.67 5.21 0.07 -10.36 16 6 C -0.06 -1.02 6.95 -82.48 -0.57 -1.59 16 7 C 0.06 0.89 11.68 -17.27 -0.20 0.69 16 8 N -0.48 -7.15 11.19 -10.30 -0.12 -7.26 16 9 C 0.18 2.34 7.78 -155.30 -1.21 1.13 16 10 N -0.44 -5.72 3.16 -109.66 -0.35 -6.07 16 11 C 0.05 0.51 5.51 -3.79 -0.02 0.49 16 12 C 0.05 0.36 6.83 37.40 0.26 0.62 16 13 O -0.37 -3.44 10.79 -35.23 -0.38 -3.82 16 14 C 0.15 1.32 7.29 36.20 0.26 1.58 16 15 C -0.15 -2.48 5.99 -24.90 -0.15 -2.63 16 16 C 0.18 4.10 5.36 -3.07 -0.02 4.08 16 17 N -0.60 -15.38 3.39 -170.08 -0.58 -15.96 16 18 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.93 -26.89 10.31 55.49 0.57 -26.32 16 22 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 C 0.13 2.82 6.10 -2.53 -0.02 2.80 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.07 1.12 6.63 -51.93 -0.34 0.77 16 30 H 0.39 5.61 4.89 -40.82 -0.20 5.41 16 31 H 0.19 2.64 8.06 -52.49 -0.42 2.21 16 32 H 0.11 0.84 6.95 -51.93 -0.36 0.48 16 33 H 0.11 1.13 7.95 -51.93 -0.41 0.71 16 34 H 0.07 0.39 8.10 -51.93 -0.42 -0.04 16 35 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 39 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 40 H 0.04 1.09 7.38 -51.93 -0.38 0.71 16 41 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.06 1.45 6.14 -51.93 -0.32 1.13 16 44 H 0.03 0.57 8.03 -51.93 -0.42 0.16 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -34.92 348.90 -8.74 -43.65 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.16 Total: 3.54 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -1.79 Total: 11.49 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -0.70 Total: -67.31 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.31 Total: -14.18 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.92 -8.74 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046391880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.893 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds