Wall clock time and date at job start Tue Mar 31 2020 12:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 110.88613 * 2 1 4 4 C 1.34781 * 120.00018 * 62.42116 * 3 2 1 5 5 O 1.21682 * 120.00132 * 5.10405 * 4 3 2 6 6 C 1.46759 * 119.99892 * 185.09794 * 4 3 2 7 7 C 1.36945 * 126.94092 * 185.83952 * 6 4 3 8 8 N 1.33565 * 107.86735 * 179.97438 * 7 6 4 9 9 C 1.30249 * 109.65315 * 359.97438 * 8 7 6 10 10 N 1.35179 * 108.96894 * 0.05829 * 9 8 7 11 11 C 1.46506 * 123.69773 * 179.88659 * 10 9 8 12 12 C 1.53474 * 108.12219 * 343.73804 * 11 10 9 13 13 O 1.43041 * 109.61344 * 48.15757 * 12 11 10 14 14 C 1.43433 * 114.05513 * 290.04332 * 13 12 11 15 15 C 1.55155 * 111.04122 * 236.09408 * 2 1 3 16 16 C 1.54318 * 102.94364 * 206.41141 * 15 2 1 17 17 N 1.47023 * 107.27231 * 22.18842 * 16 15 2 18 18 C 1.36941 * 125.64804 * 181.02262 * 17 16 15 19 19 H 1.07998 * 119.99538 * 180.02562 * 18 17 16 20 20 C 1.38806 * 119.99955 * 0.04308 * 18 17 16 21 21 N 1.31621 * 120.00271 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99820 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47132 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47070 * 120.00194 * 22 20 18 25 25 H 1.48502 * 109.46934 * 240.00227 * 22 20 18 26 26 C 1.47420 * 108.70238 * 1.06254 * 17 16 15 27 27 H 1.08999 * 109.47175 * 60.70580 * 1 2 3 28 28 H 1.08998 * 109.46782 * 180.70006 * 1 2 3 29 29 H 1.08996 * 109.47371 * 300.70095 * 1 2 3 30 30 H 0.96994 * 120.00109 * 242.42725 * 3 2 1 31 31 H 1.07996 * 126.06446 * 0.02562 * 7 6 4 32 32 H 1.09003 * 109.73447 * 224.08240 * 11 10 9 33 33 H 1.08995 * 109.73441 * 103.39828 * 11 10 9 34 34 H 1.08996 * 109.44942 * 288.10723 * 12 11 10 35 35 H 1.09001 * 109.44212 * 168.19751 * 12 11 10 36 36 H 1.08995 * 109.78846 * 169.21550 * 14 13 12 37 37 H 1.09004 * 109.78880 * 290.04908 * 14 13 12 38 38 H 1.09006 * 110.71693 * 324.77249 * 15 2 1 39 39 H 1.08992 * 110.71959 * 88.04226 * 15 2 1 40 40 H 1.08998 * 109.88307 * 262.77253 * 16 15 2 41 41 H 1.09002 * 109.88780 * 141.60695 * 16 15 2 42 42 H 0.96999 * 120.00247 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.36946 * 217.02680 * 26 17 16 44 44 H 1.09001 * 110.45939 * 94.75451 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7877 2.1910 1.0346 5 8 1.1948 1.7700 2.0102 6 6 2.2147 3.5942 0.9845 7 6 2.1215 4.5193 1.9900 8 7 2.6220 5.6710 1.5349 9 6 3.0226 5.5189 0.3049 10 7 2.7883 4.2442 -0.0791 11 6 3.1142 3.7230 -1.4089 12 6 3.3493 4.9163 -2.3450 13 8 4.2321 5.8513 -1.7185 14 6 3.6531 6.5468 -0.6057 15 6 2.0871 -0.8078 -1.2019 16 6 3.4684 -1.2732 -0.6950 17 7 3.4275 -1.2419 0.7743 18 6 4.4643 -1.5648 1.6086 19 1 4.3331 -1.5098 2.6792 20 6 5.6839 -1.9625 1.0783 21 7 5.8440 -2.0287 -0.2265 22 14 7.0983 -2.4024 2.2164 23 1 6.6646 -2.2467 3.6281 24 1 7.5070 -3.8098 1.9770 25 1 8.2476 -1.5008 1.9488 26 6 2.0853 -0.8061 1.2007 27 1 -0.3633 0.5028 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3634 0.5247 0.8836 30 1 2.5885 1.6832 -0.7446 31 1 1.7161 4.3477 2.9761 32 1 2.2856 3.1207 -1.7815 33 1 4.0168 3.1144 -1.3547 34 1 2.3977 5.4028 -2.5588 35 1 3.7941 4.5650 -3.2760 36 1 4.4286 7.0910 -0.0668 37 1 2.8921 7.2419 -0.9604 38 1 1.4482 -1.6635 -1.4207 39 1 2.1930 -0.1699 -2.0793 40 1 4.2433 -0.5985 -1.0588 41 1 3.6667 -2.2884 -1.0388 42 1 6.6963 -2.3063 -0.5971 43 1 2.1553 -0.1713 2.0840 44 1 1.4512 -1.6691 1.4039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046391880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:28 Heat of formation + Delta-G solvation = -1.089953 kcal Electronic energy + Delta-G solvation = -28394.527672 eV Core-core repulsion = 24541.282955 eV Total energy + Delta-G solvation = -3853.244717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.68761 -41.17320 -39.40567 -38.76348 -36.03778 -35.31571 -33.64016 -32.11947 -31.47779 -30.90278 -30.37212 -27.57916 -27.27827 -25.61279 -25.10896 -24.10421 -22.35416 -21.69756 -20.90415 -20.59690 -19.24899 -18.77657 -18.01746 -17.40293 -17.18322 -16.70850 -16.61729 -16.35644 -16.23447 -15.84626 -15.58438 -15.42060 -15.21129 -14.80730 -14.40904 -14.26293 -13.93855 -13.83012 -13.59092 -13.44497 -13.13862 -12.94789 -12.87198 -12.79989 -12.31125 -12.22547 -12.09306 -12.03731 -11.77058 -11.67525 -11.52915 -11.19315 -10.92463 -10.83228 -10.75664 -10.20647 -9.62252 -8.89891 -7.90806 -5.23649 0.10896 1.29522 1.39794 1.40274 1.50679 1.59678 1.96478 2.21596 2.44031 2.61478 2.95755 3.23366 3.27854 3.42215 3.54351 3.67052 3.81705 3.88064 3.99180 4.06319 4.12601 4.26559 4.30023 4.47558 4.56044 4.59426 4.63830 4.66510 4.70469 4.80956 4.82743 4.89797 5.01810 5.03041 5.29897 5.30963 5.38816 5.53996 5.62710 5.70286 5.71973 5.87719 6.16248 6.35897 6.71231 7.04279 7.08594 7.73548 8.36976 9.19231 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.004472 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.895870 B = 6259.608674 C = 6911.075237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.164 3.836 3 N -0.697 5.697 4 C 0.595 3.405 5 O -0.554 6.554 6 C -0.089 4.089 7 C 0.047 3.953 8 N -0.503 5.503 9 C 0.191 3.809 10 N -0.437 5.437 11 C 0.043 3.957 12 C 0.053 3.947 13 O -0.381 6.381 14 C 0.150 3.850 15 C -0.127 4.127 16 C 0.184 3.816 17 N -0.621 5.621 18 C -0.241 4.241 19 H 0.066 0.934 20 C -0.057 4.057 21 N -0.944 5.944 22 Si 0.970 3.030 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.290 1.290 26 C 0.124 3.876 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.401 0.599 31 H 0.187 0.813 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.153 0.847 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.016 0.984 41 H 0.011 0.989 42 H 0.248 0.752 43 H 0.033 0.967 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 15.836 -10.366 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.077 3.923 3 N -0.350 5.350 4 C 0.382 3.618 5 O -0.432 6.432 6 C -0.205 4.205 7 C -0.107 4.107 8 N -0.223 5.223 9 C -0.072 4.072 10 N -0.121 5.121 11 C -0.078 4.078 12 C -0.024 4.024 13 O -0.298 6.298 14 C 0.072 3.928 15 C -0.165 4.165 16 C 0.059 3.941 17 N -0.347 5.347 18 C -0.370 4.370 19 H 0.084 0.916 20 C -0.250 4.250 21 N -0.593 5.593 22 Si 0.799 3.201 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.217 1.217 26 C -0.002 4.002 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.239 0.761 31 H 0.204 0.796 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.410 16.070 -9.519 20.914 hybrid contribution 1.086 -1.504 0.532 1.930 sum -8.324 14.566 -8.986 19.031 Atomic orbital electron populations 1.21912 0.91357 1.03574 1.02878 1.21487 0.94409 0.80154 0.96248 1.45946 1.54001 1.12640 1.22404 1.16937 0.78768 0.83302 0.82758 1.90779 1.43474 1.76135 1.32814 1.21012 1.12768 0.94979 0.91744 1.22872 1.00804 0.87514 0.99493 1.69827 1.17464 1.26247 1.08786 1.24986 1.01957 0.86614 0.93664 1.45422 1.43995 1.10433 1.12291 1.23358 1.04007 1.00982 0.79478 1.23253 0.96836 0.86937 0.95325 1.88191 1.40385 1.56103 1.45135 1.21658 0.99567 0.88639 0.82966 1.23129 0.96836 1.00180 0.96378 1.20966 0.92927 0.97579 0.82630 1.44689 1.08505 1.78850 1.02705 1.19341 0.90764 1.37644 0.89273 0.91619 1.25466 0.99772 1.02286 0.97509 1.70126 1.24226 1.54679 1.10298 0.85135 0.79353 0.77339 0.78296 1.20013 1.21267 1.21717 1.22057 0.86324 0.95209 0.96660 0.90001 0.90100 0.92841 0.76096 0.79645 0.85865 0.88771 0.89122 0.82930 0.84169 0.86335 0.88404 0.88133 0.96584 0.97078 0.94247 0.94865 0.95397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.62 71.98 0.62 -3.07 16 2 C 0.16 5.42 0.82 5.00 0.00 5.43 16 3 N -0.70 -22.12 5.05 -420.47 -2.12 -24.25 16 4 C 0.60 21.10 7.20 86.47 0.62 21.73 16 5 O -0.55 -22.92 13.67 -4.29 -0.06 -22.98 16 6 C -0.09 -2.82 6.95 40.23 0.28 -2.54 16 7 C 0.05 1.49 11.68 84.13 0.98 2.47 16 8 N -0.50 -14.78 11.19 -186.49 -2.09 -16.87 16 9 C 0.19 4.61 7.78 138.29 1.08 5.69 16 10 N -0.44 -10.90 3.16 -500.86 -1.58 -12.49 16 11 C 0.04 0.73 5.51 86.54 0.48 1.21 16 12 C 0.05 0.56 6.83 72.14 0.49 1.05 16 13 O -0.38 -5.95 10.79 -148.98 -1.61 -7.56 16 14 C 0.15 2.22 7.29 71.36 0.52 2.74 16 15 C -0.13 -3.99 5.99 31.78 0.19 -3.80 16 16 C 0.18 8.54 5.36 86.73 0.47 9.01 16 17 N -0.62 -32.50 3.39 -692.01 -2.35 -34.85 16 18 C -0.24 -14.14 10.28 84.03 0.86 -13.27 16 19 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 20 C -0.06 -3.29 5.49 84.86 0.47 -2.83 16 21 N -0.94 -55.87 10.31 21.65 0.22 -55.65 16 22 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 26 C 0.12 5.49 6.10 86.86 0.53 6.02 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 29 H 0.05 1.63 6.63 -2.39 -0.02 1.62 16 30 H 0.40 10.90 4.89 -92.71 -0.45 10.45 16 31 H 0.19 5.58 8.06 -2.91 -0.02 5.56 16 32 H 0.12 1.60 6.95 -2.39 -0.02 1.59 16 33 H 0.09 1.86 7.95 -2.39 -0.02 1.84 16 34 H 0.09 0.61 8.10 -2.39 -0.02 0.59 16 35 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.10 2.73 8.04 -2.38 -0.02 2.71 16 39 H 0.10 2.42 8.05 -2.39 -0.02 2.40 16 40 H 0.02 0.82 7.38 -2.39 -0.02 0.80 16 41 H 0.01 0.58 7.51 -2.39 -0.02 0.56 16 42 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.03 1.65 6.14 -2.39 -0.01 1.64 16 44 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 Total: -1.00 -79.35 348.90 0.61 -78.74 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.57 Total: 16.87 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 7.59 Total: 29.82 kcal Atomic # 7 Polarization: -136.18 SS G_CDS: -7.92 Total: -144.10 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.67 Total: -30.54 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -79.35 0.61 -78.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046391880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.650 kcal (2) G-P(sol) polarization free energy of solvation -79.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds