Wall clock time and date at job start Tue Mar 31 2020 12:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.88480 * 2 1 4 4 C 1.34773 * 120.00240 * 62.42704 * 3 2 1 5 5 O 1.21672 * 119.99855 * 359.97438 * 4 3 2 6 6 C 1.46916 * 120.00626 * 179.97438 * 4 3 2 7 7 C 1.41704 * 126.55928 * 359.95571 * 6 4 3 8 8 N 1.30554 * 108.19425 * 179.78908 * 7 6 4 9 9 N 1.39348 * 109.06310 * 0.32854 * 8 7 6 10 10 C 1.35155 * 108.46459 * 359.70965 * 9 8 7 11 11 O 1.35454 * 123.87386 * 180.02562 * 10 9 8 12 12 C 1.43535 * 115.04690 * 344.45574 * 11 10 9 13 13 C 1.53246 * 109.17805 * 46.94395 * 12 11 10 14 14 C 1.46799 * 127.97704 * 179.97438 * 9 8 7 15 15 C 1.55159 * 111.03567 * 236.09669 * 2 1 3 16 16 C 1.54328 * 102.93791 * 206.40637 * 15 2 1 17 17 N 1.47017 * 107.27136 * 22.19739 * 16 15 2 18 18 C 1.36940 * 125.64819 * 181.02259 * 17 16 15 19 19 H 1.08001 * 120.00327 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99928 * 0.03828 * 18 17 16 21 21 N 1.31628 * 120.00028 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00210 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46511 * 60.00296 * 22 20 18 24 24 H 1.48507 * 109.47023 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47101 * 300.00126 * 22 20 18 26 26 C 1.47426 * 108.70581 * 1.05388 * 17 16 15 27 27 H 1.09003 * 109.47203 * 60.70245 * 1 2 3 28 28 H 1.09002 * 109.47055 * 180.70207 * 1 2 3 29 29 H 1.08999 * 109.47380 * 300.69900 * 1 2 3 30 30 H 0.96999 * 120.00164 * 242.42642 * 3 2 1 31 31 H 1.08008 * 125.89879 * 0.02562 * 7 6 4 32 32 H 1.09006 * 109.52394 * 166.85706 * 12 11 10 33 33 H 1.09004 * 109.51762 * 287.03085 * 12 11 10 34 34 H 1.09000 * 109.51077 * 55.81316 * 13 12 11 35 35 H 1.09002 * 109.50824 * 175.94633 * 13 12 11 36 36 H 1.08992 * 109.75556 * 282.31206 * 14 9 8 37 37 H 1.09003 * 109.75719 * 43.06917 * 14 9 8 38 38 H 1.08997 * 110.72045 * 324.77186 * 15 2 1 39 39 H 1.09000 * 110.71649 * 88.04965 * 15 2 1 40 40 H 1.09003 * 109.88483 * 262.77487 * 16 15 2 41 41 H 1.09003 * 109.87642 * 141.60978 * 16 15 2 42 42 H 0.97001 * 119.99635 * 180.02562 * 21 20 18 43 43 H 1.09005 * 110.36405 * 217.03798 * 26 17 16 44 44 H 1.09001 * 110.45851 * 94.75912 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1148 1.7966 1.9684 6 6 2.3119 3.5635 1.0349 7 6 3.1063 4.1639 0.0267 8 7 3.3663 5.3908 0.3893 9 7 2.7723 5.6355 1.6258 10 6 2.1254 4.5159 2.0191 11 8 1.4380 4.4100 3.1814 12 6 1.7137 5.4363 4.1462 13 6 1.6751 6.8024 3.4529 14 6 2.8020 6.8744 2.4129 15 6 2.0869 -0.8078 -1.2020 16 6 3.4684 -1.2731 -0.6952 17 7 3.4275 -1.2420 0.7741 18 6 4.4642 -1.5649 1.6084 19 1 4.3331 -1.5101 2.6790 20 6 5.6838 -1.9625 1.0780 21 7 5.8439 -2.0287 -0.2268 22 14 7.0984 -2.4024 2.2161 23 1 6.6987 -3.5371 3.0866 24 1 8.2814 -2.7923 1.4074 25 1 7.4394 -1.2282 3.0586 26 6 2.0852 -0.8062 1.2006 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3634 0.5246 0.8836 30 1 2.5885 1.6833 -0.7446 31 1 3.4361 3.6897 -0.8860 32 1 0.9617 5.4066 4.9347 33 1 2.7016 5.2745 4.5777 34 1 0.7132 6.9319 2.9569 35 1 1.8124 7.5904 4.1935 36 1 3.7635 6.9672 2.9176 37 1 2.6447 7.7311 1.7575 38 1 1.4481 -1.6634 -1.4208 39 1 2.1930 -0.1698 -2.0794 40 1 4.2433 -0.5984 -1.0589 41 1 3.6665 -2.2884 -1.0390 42 1 6.6961 -2.3069 -0.5973 43 1 2.1554 -0.1713 2.0839 44 1 1.4511 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046449021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:36 Heat of formation + Delta-G solvation = 42.663542 kcal Electronic energy + Delta-G solvation = -28004.529462 eV Core-core repulsion = 24153.182039 eV Total energy + Delta-G solvation = -3851.347423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.94540 -39.44043 -38.65212 -36.93528 -34.86146 -33.73750 -31.89634 -31.01878 -30.16290 -29.19861 -28.48715 -26.61142 -25.53284 -24.17407 -23.38245 -22.42903 -20.72821 -20.12246 -19.83437 -18.76358 -18.28752 -17.02290 -16.70750 -16.41367 -15.64005 -15.33846 -15.13092 -15.00423 -14.61091 -14.50606 -14.14349 -13.77379 -13.56082 -13.42720 -13.03477 -12.80345 -12.56867 -12.09488 -11.88930 -11.81174 -11.74414 -11.64630 -11.51648 -11.48462 -10.87319 -10.79261 -10.77573 -10.22396 -10.21382 -10.00614 -9.84652 -9.53701 -9.33497 -9.05496 -8.50774 -8.46629 -8.21949 -6.67087 -5.59922 -2.90673 1.58426 1.97647 2.25352 2.84543 3.48014 3.51570 3.53277 3.67568 3.88497 3.93518 4.03880 4.39056 4.44885 4.60639 4.76296 4.81652 4.92815 5.07034 5.14535 5.24615 5.29290 5.42246 5.52850 5.57810 5.67186 5.76835 5.86861 5.94201 6.16722 6.29341 6.30232 6.40243 6.50610 6.54855 6.70607 6.86228 7.00924 7.11635 7.36776 7.48340 7.66309 7.69404 7.91257 8.19893 8.38260 8.92457 9.35337 9.95592 10.62451 11.52218 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.004079 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.643727 B = 6862.553796 C = 7752.856558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 N -0.699 5.699 4 C 0.600 3.400 5 O -0.542 6.542 6 C -0.296 4.296 7 C 0.106 3.894 8 N -0.289 5.289 9 N -0.402 5.402 10 C 0.334 3.666 11 O -0.261 6.261 12 C 0.042 3.958 13 C -0.177 4.177 14 C 0.129 3.871 15 C -0.147 4.147 16 C 0.179 3.821 17 N -0.603 5.603 18 C -0.217 4.217 19 H 0.075 0.925 20 C -0.010 4.010 21 N -0.925 5.925 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.131 3.869 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.394 0.606 31 H 0.197 0.803 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.250 0.750 43 H 0.057 0.943 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 18.970 2.156 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.074 3.926 3 N -0.349 5.349 4 C 0.388 3.612 5 O -0.420 6.420 6 C -0.311 4.311 7 C -0.082 4.082 8 N -0.110 5.110 9 N -0.196 5.196 10 C 0.161 3.839 11 O -0.165 6.165 12 C -0.033 4.033 13 C -0.215 4.215 14 C 0.008 3.992 15 C -0.185 4.185 16 C 0.054 3.946 17 N -0.329 5.329 18 C -0.346 4.346 19 H 0.092 0.908 20 C -0.206 4.206 21 N -0.574 5.574 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.214 1.214 26 C 0.004 3.996 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.228 0.772 31 H 0.214 0.786 32 H 0.141 0.859 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.551 19.612 2.715 21.982 hybrid contribution 0.936 -0.547 0.499 1.193 sum -8.615 19.064 3.215 21.166 Atomic orbital electron populations 1.21989 0.94591 1.01902 1.02248 1.21410 0.92379 0.80822 0.98007 1.45491 1.54636 1.12463 1.22342 1.16772 0.79428 0.82923 0.82122 1.90746 1.40041 1.76286 1.34975 1.19266 1.16584 0.96423 0.98849 1.24046 0.94503 0.90866 0.98830 1.77039 1.21047 1.18099 0.94839 1.48950 1.42997 1.10462 1.17188 1.19706 0.89609 0.87129 0.87441 1.86760 1.59527 1.48718 1.21518 1.23237 1.04096 0.85387 0.90578 1.22676 0.99952 0.99493 0.99400 1.21956 1.00284 0.84486 0.92446 1.23223 1.00457 0.98864 0.95976 1.21137 0.90022 0.99753 0.83722 1.44426 1.07824 1.78829 1.01797 1.19019 0.89421 1.37180 0.88966 0.90758 1.24731 0.97627 1.02283 0.95952 1.69943 1.24051 1.54307 1.09099 0.86237 0.82039 0.78209 0.79540 1.21290 1.21687 1.21419 1.21898 0.87360 0.94800 0.95543 0.93227 0.92054 0.91000 0.77181 0.78631 0.85950 0.90612 0.89176 0.87042 0.89104 0.87823 0.91005 0.91791 0.93667 0.93998 0.93949 0.92504 0.95938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.62 37.16 0.32 -2.10 16 2 C 0.16 3.01 0.82 -129.67 -0.11 2.90 16 3 N -0.70 -12.37 5.16 -46.84 -0.24 -12.61 16 4 C 0.60 11.42 7.18 -12.75 -0.09 11.33 16 5 O -0.54 -11.86 13.30 2.86 0.04 -11.83 16 6 C -0.30 -4.93 6.14 -105.07 -0.64 -5.58 16 7 C 0.11 1.49 11.51 -16.77 -0.19 1.30 16 8 N -0.29 -4.08 12.54 30.97 0.39 -3.70 16 9 N -0.40 -5.13 4.04 -60.46 -0.24 -5.38 16 10 C 0.33 5.10 7.50 -16.09 -0.12 4.98 16 11 O -0.26 -3.77 10.18 -20.40 -0.21 -3.97 16 12 C 0.04 0.35 7.01 37.28 0.26 0.61 16 13 C -0.18 -0.98 6.17 -26.34 -0.16 -1.14 16 14 C 0.13 0.97 7.41 -3.61 -0.03 0.94 16 15 C -0.15 -2.69 5.99 -24.89 -0.15 -2.84 16 16 C 0.18 4.32 5.36 -3.06 -0.02 4.31 16 17 N -0.60 -16.01 3.39 -170.07 -0.58 -16.58 16 18 C -0.22 -6.35 10.28 -15.06 -0.15 -6.50 16 19 H 0.07 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 21 N -0.93 -27.52 10.31 55.49 0.57 -26.95 16 22 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C 0.13 3.02 6.11 -2.53 -0.02 3.01 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.07 1.29 6.45 -51.93 -0.33 0.95 16 30 H 0.39 6.06 7.45 -40.82 -0.30 5.76 16 31 H 0.20 2.13 7.51 -52.48 -0.39 1.74 16 32 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 39 H 0.06 1.00 8.05 -51.93 -0.42 0.59 16 40 H 0.05 1.19 7.38 -51.93 -0.38 0.80 16 41 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.06 1.44 6.31 -51.93 -0.33 1.11 16 44 H 0.02 0.52 8.03 -51.93 -0.42 0.11 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -37.17 353.36 -7.48 -44.65 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.31 Total: 2.31 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -1.20 Total: 10.82 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.10 Total: -65.22 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.17 Total: -15.80 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.17 -7.48 -44.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046449021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.310 kcal (2) G-P(sol) polarization free energy of solvation -37.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds