Wall clock time and date at job start Tue Mar 31 2020 12:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.88480 * 2 1 4 4 C 1.34773 * 120.00240 * 62.42704 * 3 2 1 5 5 O 1.21672 * 119.99855 * 359.97438 * 4 3 2 6 6 C 1.46916 * 120.00626 * 179.97438 * 4 3 2 7 7 C 1.41704 * 126.55928 * 359.95571 * 6 4 3 8 8 N 1.30554 * 108.19425 * 179.78908 * 7 6 4 9 9 N 1.39348 * 109.06310 * 0.32854 * 8 7 6 10 10 C 1.35155 * 108.46459 * 359.70965 * 9 8 7 11 11 O 1.35454 * 123.87386 * 180.02562 * 10 9 8 12 12 C 1.43535 * 115.04690 * 344.45574 * 11 10 9 13 13 C 1.53246 * 109.17805 * 46.94395 * 12 11 10 14 14 C 1.46799 * 127.97704 * 179.97438 * 9 8 7 15 15 C 1.55159 * 111.03567 * 236.09669 * 2 1 3 16 16 C 1.54328 * 102.93791 * 206.40637 * 15 2 1 17 17 N 1.47017 * 107.27136 * 22.19739 * 16 15 2 18 18 C 1.36940 * 125.64819 * 181.02259 * 17 16 15 19 19 H 1.08001 * 120.00327 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99928 * 0.03828 * 18 17 16 21 21 N 1.31628 * 120.00028 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00210 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46511 * 60.00296 * 22 20 18 24 24 H 1.48507 * 109.47023 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47101 * 300.00126 * 22 20 18 26 26 C 1.47426 * 108.70581 * 1.05388 * 17 16 15 27 27 H 1.09003 * 109.47203 * 60.70245 * 1 2 3 28 28 H 1.09002 * 109.47055 * 180.70207 * 1 2 3 29 29 H 1.08999 * 109.47380 * 300.69900 * 1 2 3 30 30 H 0.96999 * 120.00164 * 242.42642 * 3 2 1 31 31 H 1.08008 * 125.89879 * 0.02562 * 7 6 4 32 32 H 1.09006 * 109.52394 * 166.85706 * 12 11 10 33 33 H 1.09004 * 109.51762 * 287.03085 * 12 11 10 34 34 H 1.09000 * 109.51077 * 55.81316 * 13 12 11 35 35 H 1.09002 * 109.50824 * 175.94633 * 13 12 11 36 36 H 1.08992 * 109.75556 * 282.31206 * 14 9 8 37 37 H 1.09003 * 109.75719 * 43.06917 * 14 9 8 38 38 H 1.08997 * 110.72045 * 324.77186 * 15 2 1 39 39 H 1.09000 * 110.71649 * 88.04965 * 15 2 1 40 40 H 1.09003 * 109.88483 * 262.77487 * 16 15 2 41 41 H 1.09003 * 109.87642 * 141.60978 * 16 15 2 42 42 H 0.97001 * 119.99635 * 180.02562 * 21 20 18 43 43 H 1.09005 * 110.36405 * 217.03798 * 26 17 16 44 44 H 1.09001 * 110.45851 * 94.75912 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1148 1.7966 1.9684 6 6 2.3119 3.5635 1.0349 7 6 3.1063 4.1639 0.0267 8 7 3.3663 5.3908 0.3893 9 7 2.7723 5.6355 1.6258 10 6 2.1254 4.5159 2.0191 11 8 1.4380 4.4100 3.1814 12 6 1.7137 5.4363 4.1462 13 6 1.6751 6.8024 3.4529 14 6 2.8020 6.8744 2.4129 15 6 2.0869 -0.8078 -1.2020 16 6 3.4684 -1.2731 -0.6952 17 7 3.4275 -1.2420 0.7741 18 6 4.4642 -1.5649 1.6084 19 1 4.3331 -1.5101 2.6790 20 6 5.6838 -1.9625 1.0780 21 7 5.8439 -2.0287 -0.2268 22 14 7.0984 -2.4024 2.2161 23 1 6.6987 -3.5371 3.0866 24 1 8.2814 -2.7923 1.4074 25 1 7.4394 -1.2282 3.0586 26 6 2.0852 -0.8062 1.2006 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3634 0.5246 0.8836 30 1 2.5885 1.6833 -0.7446 31 1 3.4361 3.6897 -0.8860 32 1 0.9617 5.4066 4.9347 33 1 2.7016 5.2745 4.5777 34 1 0.7132 6.9319 2.9569 35 1 1.8124 7.5904 4.1935 36 1 3.7635 6.9672 2.9176 37 1 2.6447 7.7311 1.7575 38 1 1.4481 -1.6634 -1.4208 39 1 2.1930 -0.1698 -2.0794 40 1 4.2433 -0.5984 -1.0589 41 1 3.6665 -2.2884 -1.0390 42 1 6.6961 -2.3069 -0.5973 43 1 2.1554 -0.1713 2.0839 44 1 1.4511 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046449021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:35 Heat of formation + Delta-G solvation = 14.319640 kcal Electronic energy + Delta-G solvation = -28005.758546 eV Core-core repulsion = 24153.182039 eV Total energy + Delta-G solvation = -3852.576507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.94578 -40.92133 -39.65041 -38.59090 -35.65963 -35.55757 -33.62012 -32.08503 -31.69041 -30.59361 -30.06494 -27.46888 -27.34528 -25.56550 -24.80266 -23.52314 -22.22845 -21.68640 -20.76377 -20.25786 -19.46186 -18.75499 -17.91265 -17.49653 -17.02156 -16.63965 -16.44409 -16.07206 -15.84382 -15.82856 -15.50441 -15.37489 -15.03368 -14.64927 -14.43412 -14.02912 -13.82503 -13.48131 -13.47310 -13.31415 -13.00441 -12.80869 -12.71466 -12.69395 -12.58100 -12.16715 -12.10247 -12.01571 -11.93071 -11.78282 -11.64632 -11.45620 -10.67312 -10.55687 -10.29118 -9.90602 -9.46914 -8.81289 -7.82431 -5.15427 0.48097 1.08564 1.11481 1.43249 1.46368 1.52825 2.00320 2.38964 2.50268 2.59474 3.15321 3.35122 3.48686 3.62143 3.69917 3.78772 3.90096 3.98468 4.09260 4.12987 4.24170 4.27007 4.33628 4.48891 4.55678 4.59058 4.70997 4.76630 4.86906 4.91565 4.94792 5.00297 5.08473 5.10095 5.16097 5.38064 5.43188 5.45859 5.71925 5.78685 5.87047 6.16695 6.24083 6.42790 6.82508 7.15566 7.51324 7.81596 8.46387 9.27163 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.004079 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.643727 B = 6862.553796 C = 7752.856558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.169 3.831 3 N -0.695 5.695 4 C 0.596 3.404 5 O -0.580 6.580 6 C -0.335 4.335 7 C 0.109 3.891 8 N -0.300 5.300 9 N -0.394 5.394 10 C 0.330 3.670 11 O -0.292 6.292 12 C 0.027 3.973 13 C -0.162 4.162 14 C 0.113 3.887 15 C -0.127 4.127 16 C 0.186 3.814 17 N -0.621 5.621 18 C -0.242 4.242 19 H 0.065 0.935 20 C -0.057 4.057 21 N -0.944 5.944 22 Si 0.972 3.028 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.284 1.284 26 C 0.128 3.872 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.406 0.594 31 H 0.220 0.780 32 H 0.146 0.854 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.156 0.844 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.019 0.981 41 H 0.008 0.992 42 H 0.248 0.752 43 H 0.028 0.972 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 20.971 1.963 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.082 3.918 3 N -0.346 5.346 4 C 0.385 3.615 5 O -0.462 6.462 6 C -0.350 4.350 7 C -0.079 4.079 8 N -0.121 5.121 9 N -0.189 5.189 10 C 0.155 3.845 11 O -0.197 6.197 12 C -0.047 4.047 13 C -0.200 4.200 14 C -0.005 4.005 15 C -0.165 4.165 16 C 0.061 3.939 17 N -0.347 5.347 18 C -0.372 4.372 19 H 0.083 0.917 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.801 3.199 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.210 1.210 26 C 0.002 3.998 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.242 0.758 31 H 0.237 0.763 32 H 0.163 0.837 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.173 0.827 36 H 0.125 0.875 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.954 21.655 2.517 23.966 hybrid contribution 1.063 -1.099 0.694 1.679 sum -8.892 20.556 3.211 22.625 Atomic orbital electron populations 1.21903 0.92155 1.02920 1.02712 1.21315 0.93979 0.80826 0.95654 1.45443 1.54648 1.11866 1.22608 1.17150 0.78821 0.83876 0.81614 1.90711 1.41889 1.77246 1.36332 1.19289 1.18856 0.95952 1.00936 1.24376 0.93705 0.90704 0.99123 1.76973 1.21382 1.18046 0.95730 1.49352 1.41577 1.11181 1.16748 1.19805 0.89357 0.87712 0.87585 1.86726 1.59615 1.51364 1.21980 1.23709 1.05120 0.85709 0.90194 1.22682 0.99002 0.98851 0.99469 1.22527 1.02040 0.83013 0.92950 1.23105 0.96774 0.99998 0.96668 1.20948 0.93009 0.97384 0.82539 1.44678 1.08449 1.78799 1.02742 1.19267 0.90863 1.37829 0.89204 0.91750 1.25484 0.99749 1.02325 0.97512 1.70140 1.24249 1.54533 1.10347 0.85257 0.78913 0.77966 0.77808 1.20585 1.21253 1.21044 1.21984 0.86271 0.94894 0.96643 0.90397 0.90698 0.92912 0.75833 0.76319 0.83659 0.90357 0.89427 0.82671 0.87509 0.85786 0.88986 0.88173 0.96283 0.97334 0.94316 0.95410 0.95960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 8.62 71.98 0.62 -3.66 16 2 C 0.17 6.23 0.82 4.99 0.00 6.24 16 3 N -0.70 -24.46 5.16 -420.33 -2.17 -26.63 16 4 C 0.60 23.20 7.18 86.52 0.62 23.82 16 5 O -0.58 -26.41 13.30 -2.01 -0.03 -26.44 16 6 C -0.34 -11.31 6.14 -20.15 -0.12 -11.43 16 7 C 0.11 3.02 11.51 85.74 0.99 4.01 16 8 N -0.30 -8.16 12.54 -55.93 -0.70 -8.86 16 9 N -0.39 -9.60 4.04 -456.68 -1.85 -11.44 16 10 C 0.33 10.09 7.50 84.18 0.63 10.73 16 11 O -0.29 -8.50 10.18 -85.26 -0.87 -9.36 16 12 C 0.03 0.40 7.01 72.06 0.51 0.91 16 13 C -0.16 -1.32 6.17 30.85 0.19 -1.13 16 14 C 0.11 1.41 7.41 86.50 0.64 2.05 16 15 C -0.13 -4.45 5.99 31.79 0.19 -4.26 16 16 C 0.19 9.14 5.36 86.73 0.47 9.60 16 17 N -0.62 -33.92 3.39 -691.98 -2.35 -36.27 16 18 C -0.24 -14.61 10.28 84.03 0.86 -13.75 16 19 H 0.06 3.88 7.83 -2.91 -0.02 3.86 16 20 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 21 N -0.94 -57.24 10.31 21.65 0.22 -57.01 16 22 Si 0.97 47.83 29.55 68.60 2.03 49.86 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 26 C 0.13 6.09 6.11 86.85 0.53 6.62 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.07 2.10 8.13 -2.39 -0.02 2.08 16 29 H 0.05 1.87 6.45 -2.39 -0.02 1.85 16 30 H 0.41 12.15 7.45 -92.71 -0.69 11.46 16 31 H 0.22 4.55 7.51 -2.91 -0.02 4.53 16 32 H 0.15 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.16 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 2.90 8.04 -2.39 -0.02 2.88 16 39 H 0.10 2.82 8.05 -2.39 -0.02 2.80 16 40 H 0.02 1.02 7.38 -2.39 -0.02 1.00 16 41 H 0.01 0.47 7.51 -2.39 -0.02 0.45 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.03 1.47 6.31 -2.38 -0.02 1.45 16 44 H 0.02 1.06 8.03 -2.39 -0.02 1.04 16 Total: -1.00 -84.91 353.36 1.22 -83.70 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.34 Total: 15.65 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 6.59 Total: 26.82 kcal Atomic # 7 Polarization: -133.38 SS G_CDS: -6.84 Total: -140.22 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.89 Total: -35.80 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -84.91 1.22 -83.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046449021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.016 kcal (2) G-P(sol) polarization free energy of solvation -84.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds