Wall clock time and date at job start Tue Mar 31 2020 12:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 110.88605 * 2 1 4 4 C 1.34783 * 119.99712 * 297.57528 * 3 2 1 5 5 O 1.21657 * 120.00010 * 359.97438 * 4 3 2 6 6 C 1.46922 * 119.99701 * 180.02562 * 4 3 2 7 7 C 1.41701 * 126.56293 * 359.68424 * 6 4 3 8 8 N 1.30557 * 108.19509 * 179.83168 * 7 6 4 9 9 N 1.39355 * 109.06158 * 0.37667 * 8 7 6 10 10 C 1.35158 * 108.46362 * 359.81417 * 9 8 7 11 11 O 1.35458 * 123.87492 * 179.81909 * 10 9 8 12 12 C 1.43539 * 115.05281 * 344.52632 * 11 10 9 13 13 C 1.53253 * 109.18897 * 46.89096 * 12 11 10 14 14 C 1.46796 * 127.98065 * 179.88633 * 9 8 7 15 15 C 1.55154 * 111.00682 * 123.92183 * 2 1 3 16 16 C 1.54325 * 102.94303 * 153.57509 * 15 2 1 17 17 N 1.47290 * 107.30599 * 337.81911 * 16 15 2 18 18 C 1.36938 * 125.79079 * 178.92205 * 17 16 15 19 19 H 1.08005 * 119.99558 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00146 * 0.02562 * 18 17 16 21 21 N 1.31620 * 120.00086 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47294 * 89.99594 * 22 20 18 24 24 H 1.48503 * 109.46797 * 209.99511 * 22 20 18 25 25 H 1.48500 * 109.47035 * 329.99310 * 22 20 18 26 26 C 1.47425 * 108.55742 * 358.92448 * 17 16 15 27 27 H 1.09001 * 109.47276 * 182.43003 * 1 2 3 28 28 H 1.09003 * 109.46690 * 302.42543 * 1 2 3 29 29 H 1.08998 * 109.47248 * 62.42704 * 1 2 3 30 30 H 0.96998 * 120.00502 * 117.57780 * 3 2 1 31 31 H 1.07998 * 125.90340 * 0.02562 * 7 6 4 32 32 H 1.08996 * 109.51357 * 286.97711 * 12 11 10 33 33 H 1.09007 * 109.51480 * 166.80502 * 12 11 10 34 34 H 1.08992 * 109.50902 * 175.94767 * 13 12 11 35 35 H 1.09002 * 109.50629 * 55.80979 * 13 12 11 36 36 H 1.08994 * 109.76042 * 282.52107 * 14 9 8 37 37 H 1.09007 * 109.75064 * 43.22094 * 14 9 8 38 38 H 1.09002 * 110.72290 * 271.94195 * 15 2 1 39 39 H 1.08994 * 110.71922 * 35.03664 * 15 2 1 40 40 H 1.09004 * 109.88239 * 97.22707 * 16 15 2 41 41 H 1.08999 * 109.88411 * 218.39137 * 16 15 2 42 42 H 0.96999 * 120.00175 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.36696 * 265.26054 * 26 17 16 44 44 H 1.08995 * 110.36608 * 143.04891 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7877 2.1910 -1.0347 5 8 1.1155 1.7963 -1.9688 6 6 2.3119 3.5635 -1.0349 7 6 3.1004 4.1661 -0.0235 8 7 3.3694 5.3896 -0.3910 9 7 2.7738 5.6350 -1.6267 10 6 2.1254 4.5159 -2.0192 11 8 1.4336 4.4116 -3.1791 12 6 1.1307 5.6595 -3.8205 13 6 2.3929 6.5280 -3.8540 14 6 2.8089 6.8717 -2.4169 15 6 2.0862 -0.8083 1.2019 16 6 3.4675 -1.2743 0.6955 17 7 3.4280 -1.2427 -0.7766 18 6 4.4637 -1.5645 -1.6126 19 1 4.3312 -1.5078 -2.6830 20 6 5.6838 -1.9635 -1.0844 21 7 5.8453 -2.0322 0.2201 22 14 7.0968 -2.4017 -2.2249 23 1 7.8992 -1.1850 -2.5090 24 1 7.9583 -3.4225 -1.5760 25 1 6.5561 -2.9462 -3.4963 26 6 2.0852 -0.8062 -1.2006 27 1 -0.3634 -1.0267 0.0436 28 1 -0.3633 0.5511 0.8675 29 1 -0.3633 0.4757 -0.9109 30 1 2.5885 1.6833 0.7445 31 1 3.4255 3.6938 0.8917 32 1 0.3486 6.1749 -3.2631 33 1 0.7903 5.4722 -4.8389 34 1 2.1880 7.4468 -4.4033 35 1 3.1979 5.9814 -4.3452 36 1 2.1138 7.5980 -1.9957 37 1 3.8185 7.2828 -2.4130 38 1 2.1922 -0.1707 2.0796 39 1 1.4452 -1.6618 1.4223 40 1 4.2427 -0.6001 1.0596 41 1 3.6651 -2.2897 1.0391 42 1 6.6980 -2.3107 0.5892 43 1 1.4518 -1.6698 -1.4031 44 1 2.1541 -0.1717 -2.0842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046449022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:40 Heat of formation + Delta-G solvation = 42.613007 kcal Electronic energy + Delta-G solvation = -28000.498897 eV Core-core repulsion = 24149.149283 eV Total energy + Delta-G solvation = -3851.349614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94688 -39.43771 -38.65526 -36.92779 -34.86008 -33.73010 -31.89554 -31.01944 -30.16081 -29.20049 -28.48788 -26.61551 -25.53034 -24.17575 -23.37757 -22.42870 -20.73218 -20.12522 -19.84069 -18.76323 -18.28946 -17.02299 -16.72249 -16.39067 -15.63838 -15.33556 -15.13509 -15.03941 -14.60343 -14.50353 -14.10403 -13.77235 -13.60234 -13.40159 -13.07542 -12.72545 -12.59450 -12.09681 -11.90404 -11.80701 -11.73687 -11.63776 -11.52024 -11.50405 -10.88192 -10.79383 -10.77083 -10.22803 -10.20687 -9.97838 -9.84794 -9.53145 -9.33758 -9.05867 -8.51130 -8.46991 -8.22124 -6.66727 -5.59823 -2.90311 1.58865 1.97308 2.25356 2.83085 3.47664 3.52617 3.54722 3.67892 3.85268 3.98184 4.02693 4.39064 4.44741 4.61039 4.75276 4.78124 4.93077 5.07465 5.14436 5.24547 5.30829 5.42488 5.52543 5.58017 5.67276 5.76508 5.86238 5.94213 6.16182 6.29037 6.30068 6.40115 6.50263 6.54801 6.70572 6.85809 7.01346 7.11321 7.36692 7.48181 7.66485 7.68898 7.91423 8.19766 8.37947 8.92387 9.35207 9.95635 10.62785 11.52669 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.004100 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.424879 B = 6827.473380 C = 7749.881948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.161 3.839 3 N -0.700 5.700 4 C 0.600 3.400 5 O -0.542 6.542 6 C -0.296 4.296 7 C 0.106 3.894 8 N -0.288 5.288 9 N -0.402 5.402 10 C 0.334 3.666 11 O -0.260 6.260 12 C 0.044 3.956 13 C -0.178 4.178 14 C 0.130 3.870 15 C -0.146 4.146 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.216 4.216 19 H 0.075 0.925 20 C -0.011 4.011 21 N -0.925 5.925 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.130 3.870 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.394 0.606 31 H 0.197 0.803 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.250 0.750 43 H 0.023 0.977 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.254 19.158 -1.868 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.074 3.926 3 N -0.350 5.350 4 C 0.388 3.612 5 O -0.420 6.420 6 C -0.311 4.311 7 C -0.083 4.083 8 N -0.110 5.110 9 N -0.196 5.196 10 C 0.161 3.839 11 O -0.165 6.165 12 C -0.032 4.032 13 C -0.217 4.217 14 C 0.009 3.991 15 C -0.185 4.185 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.344 4.344 19 H 0.093 0.907 20 C -0.206 4.206 21 N -0.574 5.574 22 Si 0.739 3.261 23 H -0.219 1.219 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.004 3.996 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.228 0.772 31 H 0.214 0.786 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.041 0.959 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.050 19.763 -2.478 22.310 hybrid contribution 0.906 -0.514 -0.464 1.140 sum -9.144 19.249 -2.941 21.513 Atomic orbital electron populations 1.21987 0.94586 1.01736 1.02366 1.21410 0.92377 0.80829 0.98005 1.45497 1.54642 1.12440 1.22377 1.16772 0.79419 0.82923 0.82127 1.90743 1.40067 1.76265 1.34949 1.19269 1.17648 0.97138 0.97068 1.24046 0.94635 0.90819 0.98755 1.77043 1.20776 1.18233 0.94958 1.48955 1.42011 1.11120 1.17522 1.19709 0.89695 0.87878 0.86596 1.86779 1.68523 1.30212 1.30946 1.23224 0.96377 0.83677 0.99911 1.22686 0.99719 1.03159 0.96131 1.21949 1.04760 0.83484 0.88911 1.23215 1.00433 0.98874 0.95967 1.21178 0.90032 0.99758 0.83706 1.44494 1.07828 1.78813 1.01772 1.19066 0.89421 1.36989 0.88963 0.90686 1.24727 0.97633 1.02322 0.95957 1.69944 1.23885 1.54415 1.09162 0.86157 0.82524 0.77694 0.79687 1.21857 1.21782 1.20799 1.21896 0.87387 0.94806 0.95545 0.92071 0.93220 0.91034 0.77183 0.78639 0.90790 0.85968 0.87035 0.88997 0.89194 0.87783 0.91807 0.91005 0.93656 0.93966 0.94006 0.95942 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.58 37.16 0.32 -2.08 16 2 C 0.16 3.00 0.82 -129.67 -0.11 2.90 16 3 N -0.70 -12.36 5.17 -46.84 -0.24 -12.60 16 4 C 0.60 11.41 7.19 -12.74 -0.09 11.32 16 5 O -0.54 -11.85 13.33 2.88 0.04 -11.81 16 6 C -0.30 -4.93 6.14 -105.06 -0.64 -5.57 16 7 C 0.11 1.49 11.51 -16.77 -0.19 1.30 16 8 N -0.29 -4.08 12.54 30.97 0.39 -3.69 16 9 N -0.40 -5.13 4.04 -60.46 -0.24 -5.37 16 10 C 0.33 5.09 7.50 -16.09 -0.12 4.97 16 11 O -0.26 -3.75 10.18 -20.41 -0.21 -3.96 16 12 C 0.04 0.34 7.01 37.29 0.26 0.61 16 13 C -0.18 -1.04 6.17 -26.33 -0.16 -1.20 16 14 C 0.13 0.97 7.41 -3.61 -0.03 0.95 16 15 C -0.15 -2.68 6.00 -24.90 -0.15 -2.83 16 16 C 0.18 4.31 5.38 -2.92 -0.02 4.30 16 17 N -0.60 -16.05 3.40 -169.85 -0.58 -16.62 16 18 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 19 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 20 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 21 N -0.93 -27.59 10.34 55.49 0.57 -27.02 16 22 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.13 3.02 6.10 -2.53 -0.02 3.01 16 27 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.27 6.53 -51.93 -0.34 0.94 16 30 H 0.39 6.06 7.45 -40.82 -0.30 5.75 16 31 H 0.20 2.13 7.51 -52.49 -0.39 1.73 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 39 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 40 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 41 H 0.04 1.13 7.52 -51.93 -0.39 0.74 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 43 H 0.02 0.52 8.04 -51.93 -0.42 0.11 16 44 H 0.06 1.44 6.31 -51.93 -0.33 1.12 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -37.33 353.46 -7.48 -44.81 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.32 Total: 2.19 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -1.20 Total: 10.76 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.10 Total: -65.31 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.17 Total: -15.77 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.33 -7.48 -44.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046449022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.420 kcal (2) G-P(sol) polarization free energy of solvation -37.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds