Wall clock time and date at job start Tue Mar 31 2020 12:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 110.88605 * 2 1 4 4 C 1.34783 * 119.99712 * 297.57528 * 3 2 1 5 5 O 1.21657 * 120.00010 * 359.97438 * 4 3 2 6 6 C 1.46922 * 119.99701 * 180.02562 * 4 3 2 7 7 C 1.41701 * 126.56293 * 359.68424 * 6 4 3 8 8 N 1.30557 * 108.19509 * 179.83168 * 7 6 4 9 9 N 1.39355 * 109.06158 * 0.37667 * 8 7 6 10 10 C 1.35158 * 108.46362 * 359.81417 * 9 8 7 11 11 O 1.35458 * 123.87492 * 179.81909 * 10 9 8 12 12 C 1.43539 * 115.05281 * 344.52632 * 11 10 9 13 13 C 1.53253 * 109.18897 * 46.89096 * 12 11 10 14 14 C 1.46796 * 127.98065 * 179.88633 * 9 8 7 15 15 C 1.55154 * 111.00682 * 123.92183 * 2 1 3 16 16 C 1.54325 * 102.94303 * 153.57509 * 15 2 1 17 17 N 1.47290 * 107.30599 * 337.81911 * 16 15 2 18 18 C 1.36938 * 125.79079 * 178.92205 * 17 16 15 19 19 H 1.08005 * 119.99558 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00146 * 0.02562 * 18 17 16 21 21 N 1.31620 * 120.00086 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47294 * 89.99594 * 22 20 18 24 24 H 1.48503 * 109.46797 * 209.99511 * 22 20 18 25 25 H 1.48500 * 109.47035 * 329.99310 * 22 20 18 26 26 C 1.47425 * 108.55742 * 358.92448 * 17 16 15 27 27 H 1.09001 * 109.47276 * 182.43003 * 1 2 3 28 28 H 1.09003 * 109.46690 * 302.42543 * 1 2 3 29 29 H 1.08998 * 109.47248 * 62.42704 * 1 2 3 30 30 H 0.96998 * 120.00502 * 117.57780 * 3 2 1 31 31 H 1.07998 * 125.90340 * 0.02562 * 7 6 4 32 32 H 1.08996 * 109.51357 * 286.97711 * 12 11 10 33 33 H 1.09007 * 109.51480 * 166.80502 * 12 11 10 34 34 H 1.08992 * 109.50902 * 175.94767 * 13 12 11 35 35 H 1.09002 * 109.50629 * 55.80979 * 13 12 11 36 36 H 1.08994 * 109.76042 * 282.52107 * 14 9 8 37 37 H 1.09007 * 109.75064 * 43.22094 * 14 9 8 38 38 H 1.09002 * 110.72290 * 271.94195 * 15 2 1 39 39 H 1.08994 * 110.71922 * 35.03664 * 15 2 1 40 40 H 1.09004 * 109.88239 * 97.22707 * 16 15 2 41 41 H 1.08999 * 109.88411 * 218.39137 * 16 15 2 42 42 H 0.96999 * 120.00175 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.36696 * 265.26054 * 26 17 16 44 44 H 1.08995 * 110.36608 * 143.04891 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7877 2.1910 -1.0347 5 8 1.1155 1.7963 -1.9688 6 6 2.3119 3.5635 -1.0349 7 6 3.1004 4.1661 -0.0235 8 7 3.3694 5.3896 -0.3910 9 7 2.7738 5.6350 -1.6267 10 6 2.1254 4.5159 -2.0192 11 8 1.4336 4.4116 -3.1791 12 6 1.1307 5.6595 -3.8205 13 6 2.3929 6.5280 -3.8540 14 6 2.8089 6.8717 -2.4169 15 6 2.0862 -0.8083 1.2019 16 6 3.4675 -1.2743 0.6955 17 7 3.4280 -1.2427 -0.7766 18 6 4.4637 -1.5645 -1.6126 19 1 4.3312 -1.5078 -2.6830 20 6 5.6838 -1.9635 -1.0844 21 7 5.8453 -2.0322 0.2201 22 14 7.0968 -2.4017 -2.2249 23 1 7.8992 -1.1850 -2.5090 24 1 7.9583 -3.4225 -1.5760 25 1 6.5561 -2.9462 -3.4963 26 6 2.0852 -0.8062 -1.2006 27 1 -0.3634 -1.0267 0.0436 28 1 -0.3633 0.5511 0.8675 29 1 -0.3633 0.4757 -0.9109 30 1 2.5885 1.6833 0.7445 31 1 3.4255 3.6938 0.8917 32 1 0.3486 6.1749 -3.2631 33 1 0.7903 5.4722 -4.8389 34 1 2.1880 7.4468 -4.4033 35 1 3.1979 5.9814 -4.3452 36 1 2.1138 7.5980 -1.9957 37 1 3.8185 7.2828 -2.4130 38 1 2.1922 -0.1707 2.0796 39 1 1.4452 -1.6618 1.4223 40 1 4.2427 -0.6001 1.0596 41 1 3.6651 -2.2897 1.0391 42 1 6.6980 -2.3107 0.5892 43 1 1.4518 -1.6698 -1.4031 44 1 2.1541 -0.1717 -2.0842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046449022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:39 Heat of formation + Delta-G solvation = 14.069127 kcal Electronic energy + Delta-G solvation = -28001.736652 eV Core-core repulsion = 24149.149283 eV Total energy + Delta-G solvation = -3852.587370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.94230 -40.91443 -39.64660 -38.58175 -35.65863 -35.55472 -33.62042 -32.08253 -31.68737 -30.59517 -30.06278 -27.46967 -27.33750 -25.56321 -24.80015 -23.52209 -22.23350 -21.68756 -20.76231 -20.25554 -19.45924 -18.75684 -17.91550 -17.47944 -17.01436 -16.63742 -16.44046 -16.15161 -15.84313 -15.75154 -15.53094 -15.24119 -15.13785 -14.70745 -14.35609 -14.04918 -13.82987 -13.50418 -13.42595 -13.32283 -13.01918 -12.82724 -12.71369 -12.69346 -12.57763 -12.17006 -12.09439 -11.99784 -11.92671 -11.77899 -11.64805 -11.45614 -10.68467 -10.55795 -10.28684 -9.90610 -9.46566 -8.81413 -7.83048 -5.15680 0.49112 1.08687 1.11556 1.43118 1.44793 1.53734 2.00592 2.38921 2.49900 2.59646 3.14989 3.34898 3.48846 3.61991 3.70449 3.78601 3.90294 3.98120 4.09502 4.12787 4.24650 4.26882 4.33627 4.49126 4.56479 4.59001 4.71025 4.76564 4.87018 4.91897 4.94936 5.00280 5.08808 5.10140 5.16286 5.38392 5.43074 5.45884 5.71459 5.78321 5.86929 6.17367 6.23543 6.43023 6.82694 7.14995 7.51585 7.80871 8.46181 9.27047 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.004100 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.424879 B = 6827.473380 C = 7749.881948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.169 3.831 3 N -0.696 5.696 4 C 0.596 3.404 5 O -0.580 6.580 6 C -0.336 4.336 7 C 0.109 3.891 8 N -0.300 5.300 9 N -0.394 5.394 10 C 0.331 3.669 11 O -0.294 6.294 12 C 0.029 3.971 13 C -0.167 4.167 14 C 0.115 3.885 15 C -0.127 4.127 16 C 0.185 3.815 17 N -0.621 5.621 18 C -0.240 4.240 19 H 0.064 0.936 20 C -0.058 4.058 21 N -0.944 5.944 22 Si 0.972 3.028 23 H -0.288 1.288 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.128 3.872 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.406 0.594 31 H 0.220 0.780 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.157 0.843 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.019 0.981 41 H 0.009 0.991 42 H 0.247 0.753 43 H 0.023 0.977 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 21.221 -1.588 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.082 3.918 3 N -0.346 5.346 4 C 0.385 3.615 5 O -0.462 6.462 6 C -0.351 4.351 7 C -0.079 4.079 8 N -0.122 5.122 9 N -0.189 5.189 10 C 0.156 3.844 11 O -0.198 6.198 12 C -0.045 4.045 13 C -0.205 4.205 14 C -0.004 4.004 15 C -0.165 4.165 16 C 0.061 3.939 17 N -0.347 5.347 18 C -0.370 4.370 19 H 0.082 0.918 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.800 3.200 23 H -0.215 1.215 24 H -0.213 1.213 25 H -0.201 1.201 26 C 0.002 3.998 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.242 0.758 31 H 0.237 0.763 32 H 0.108 0.892 33 H 0.160 0.840 34 H 0.175 0.825 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.620 21.870 -2.191 24.411 hybrid contribution 1.062 -1.071 -0.676 1.653 sum -9.558 20.800 -2.867 23.069 Atomic orbital electron populations 1.21900 0.92103 1.02960 1.02660 1.21314 0.94010 0.80825 0.95617 1.45451 1.54659 1.11843 1.22644 1.17150 0.78812 0.83878 0.81613 1.90708 1.41919 1.77232 1.36298 1.19292 1.19912 0.96620 0.99254 1.24373 0.93848 0.90646 0.99044 1.76976 1.21129 1.18197 0.95851 1.49357 1.40592 1.11848 1.17093 1.19801 0.89575 0.88386 0.86632 1.86740 1.68307 1.34054 1.30721 1.23711 0.97989 0.82146 1.00646 1.22701 0.97950 1.04461 0.95378 1.22516 1.06488 0.82052 0.89319 1.23097 0.96737 1.00021 0.96664 1.20993 0.93046 0.97398 0.82486 1.44745 1.08454 1.78784 1.02737 1.19297 0.90872 1.37632 0.89163 0.91767 1.25476 0.99737 1.02379 0.97522 1.70136 1.24120 1.54642 1.10399 0.85185 0.79355 0.77340 0.78109 1.21542 1.21322 1.20101 1.21984 0.86287 0.94902 0.96659 0.90601 0.90444 0.92950 0.75838 0.76332 0.89171 0.83991 0.82480 0.90494 0.86525 0.86465 0.88167 0.88942 0.96288 0.97286 0.94324 0.95965 0.95448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 8.58 71.98 0.62 -3.62 16 2 C 0.17 6.23 0.82 4.99 0.00 6.23 16 3 N -0.70 -24.44 5.17 -420.33 -2.17 -26.61 16 4 C 0.60 23.17 7.19 86.52 0.62 23.80 16 5 O -0.58 -26.38 13.33 -1.97 -0.03 -26.41 16 6 C -0.34 -11.31 6.14 -20.15 -0.12 -11.43 16 7 C 0.11 3.02 11.51 85.74 0.99 4.00 16 8 N -0.30 -8.16 12.54 -55.94 -0.70 -8.87 16 9 N -0.39 -9.59 4.04 -456.67 -1.85 -11.43 16 10 C 0.33 10.09 7.50 84.18 0.63 10.72 16 11 O -0.29 -8.51 10.18 -85.32 -0.87 -9.38 16 12 C 0.03 0.41 7.01 72.07 0.51 0.91 16 13 C -0.17 -1.50 6.17 30.85 0.19 -1.31 16 14 C 0.11 1.42 7.41 86.50 0.64 2.06 16 15 C -0.13 -4.43 6.00 31.78 0.19 -4.24 16 16 C 0.19 9.12 5.38 86.68 0.47 9.59 16 17 N -0.62 -34.04 3.40 -691.30 -2.35 -36.40 16 18 C -0.24 -14.54 10.28 84.03 0.86 -13.68 16 19 H 0.06 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 21 N -0.94 -57.42 10.34 21.65 0.22 -57.20 16 22 Si 0.97 48.07 29.55 68.60 2.03 50.10 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 26 C 0.13 6.08 6.10 86.85 0.53 6.61 16 27 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.84 6.53 -2.39 -0.02 1.83 16 30 H 0.41 12.13 7.45 -92.71 -0.69 11.44 16 31 H 0.22 4.54 7.51 -2.91 -0.02 4.52 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.14 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.16 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.10 2.82 8.05 -2.39 -0.02 2.80 16 39 H 0.09 2.90 8.01 -2.39 -0.02 2.88 16 40 H 0.02 1.02 7.39 -2.38 -0.02 1.00 16 41 H 0.01 0.49 7.52 -2.39 -0.02 0.47 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.02 1.06 8.04 -2.39 -0.02 1.04 16 44 H 0.03 1.45 6.31 -2.39 -0.02 1.44 16 Total: -1.00 -85.46 353.46 1.21 -84.25 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.34 Total: 15.25 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 6.59 Total: 26.69 kcal Atomic # 7 Polarization: -133.65 SS G_CDS: -6.85 Total: -140.50 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.89 Total: -35.78 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -85.46 1.21 -84.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046449022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.320 kcal (2) G-P(sol) polarization free energy of solvation -85.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds