Wall clock time and date at job start Tue Mar 31 2020 12:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 110.88691 * 2 1 4 4 C 1.34777 * 120.00012 * 62.42607 * 3 2 1 5 5 O 1.21577 * 120.00278 * 0.02562 * 4 3 2 6 6 C 1.47723 * 120.00162 * 180.02562 * 4 3 2 7 7 C 1.41292 * 125.95388 * 179.71664 * 6 4 3 8 8 C 1.34856 * 107.70515 * 180.22368 * 7 6 4 9 9 N 1.36399 * 107.92464 * 0.09880 * 8 7 6 10 10 N 1.32124 * 125.94893 * 0.02733 * 6 4 3 11 11 C 1.46723 * 123.62196 * 179.81374 * 9 8 7 12 12 C 1.53530 * 107.96404 * 343.07100 * 11 9 8 13 13 C 1.53223 * 109.31176 * 47.25906 * 12 11 9 14 14 O 1.36031 * 128.63592 * 180.20477 * 8 7 6 15 15 C 1.55150 * 111.03840 * 236.09190 * 2 1 3 16 16 C 1.54320 * 102.94667 * 206.40917 * 15 2 1 17 17 N 1.47020 * 107.26825 * 22.19471 * 16 15 2 18 18 C 1.36937 * 125.64844 * 181.02282 * 17 16 15 19 19 H 1.08005 * 120.00349 * 180.02562 * 18 17 16 20 20 C 1.38815 * 119.99701 * 0.04460 * 18 17 16 21 21 N 1.31610 * 120.00167 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99573 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47210 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46800 * 120.00039 * 22 20 18 25 25 H 1.48500 * 109.46963 * 239.99863 * 22 20 18 26 26 C 1.47424 * 108.70449 * 1.05803 * 17 16 15 27 27 H 1.08993 * 109.47379 * 60.69721 * 1 2 3 28 28 H 1.09002 * 109.47192 * 180.70558 * 1 2 3 29 29 H 1.09008 * 109.46934 * 300.70365 * 1 2 3 30 30 H 0.96996 * 119.99833 * 242.43065 * 3 2 1 31 31 H 1.07998 * 126.14311 * 0.19867 * 7 6 4 32 32 H 1.09004 * 109.76170 * 102.68947 * 11 9 8 33 33 H 1.08996 * 109.76440 * 223.45337 * 11 9 8 34 34 H 1.09001 * 109.49423 * 167.20911 * 12 11 9 35 35 H 1.09005 * 109.49917 * 287.27133 * 12 11 9 36 36 H 1.09003 * 109.50473 * 55.33897 * 13 12 11 37 37 H 1.08998 * 109.50568 * 175.46289 * 13 12 11 38 38 H 1.08999 * 110.72339 * 324.77817 * 15 2 1 39 39 H 1.09008 * 110.71867 * 88.04447 * 15 2 1 40 40 H 1.09001 * 109.88222 * 262.77648 * 16 15 2 41 41 H 1.08994 * 110.01348 * 141.68166 * 16 15 2 42 42 H 0.97000 * 119.99855 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.36592 * 217.02989 * 26 17 16 44 44 H 1.09000 * 110.45717 * 94.76091 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1161 1.7967 1.9682 6 6 2.3140 3.5713 1.0344 7 6 2.1103 4.5369 2.0456 8 6 2.7467 5.6649 1.6696 9 7 3.3347 5.4323 0.4611 10 7 3.0522 4.1198 0.0858 11 6 4.1172 6.4364 -0.2684 12 6 3.7889 7.8144 0.3238 13 6 3.8551 7.7377 1.8527 14 8 2.8298 6.8527 2.3275 15 6 2.0870 -0.8078 -1.2018 16 6 3.4683 -1.2733 -0.6951 17 7 3.4275 -1.2420 0.7742 18 6 4.4642 -1.5649 1.6085 19 1 4.3331 -1.5100 2.6791 20 6 5.6839 -1.9626 1.0780 21 7 5.8436 -2.0296 -0.2266 22 14 7.0984 -2.4025 2.2162 23 1 6.6651 -2.2457 3.6278 24 1 7.5070 -3.8099 1.9766 25 1 8.2477 -1.5009 1.9486 26 6 2.0853 -0.8061 1.2006 27 1 -0.3634 0.5029 -0.8961 28 1 -0.3634 -1.0276 0.0127 29 1 -0.3633 0.5248 0.8837 30 1 2.5885 1.6832 -0.7446 31 1 1.5461 4.3968 2.9557 32 1 5.1812 6.2297 -0.1529 33 1 3.8497 6.4160 -1.3248 34 1 4.5122 8.5464 -0.0355 35 1 2.7863 8.1127 0.0170 36 1 4.8313 7.3596 2.1562 37 1 3.7020 8.7313 2.2739 38 1 1.4481 -1.6634 -1.4207 39 1 2.1930 -0.1699 -2.0794 40 1 4.2432 -0.5985 -1.0589 41 1 3.6693 -2.2879 -1.0388 42 1 6.6958 -2.3079 -0.5972 43 1 2.1554 -0.1714 2.0840 44 1 1.4512 -1.6691 1.4040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046470051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:15 Heat of formation + Delta-G solvation = 44.445371 kcal Electronic energy + Delta-G solvation = -27610.879597 eV Core-core repulsion = 23759.609439 eV Total energy + Delta-G solvation = -3851.270157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.88471 -39.73793 -38.57336 -37.04141 -34.93594 -33.87179 -32.04112 -30.97060 -29.83962 -29.48162 -28.59498 -26.72861 -25.58873 -24.27803 -23.54805 -22.73901 -20.43868 -20.15063 -19.88459 -18.92467 -18.32394 -16.96733 -16.74081 -16.25718 -15.80253 -15.57608 -15.14664 -15.12582 -14.62974 -14.54784 -14.22940 -13.98858 -13.63796 -13.48381 -13.11544 -12.73024 -12.69757 -12.12568 -11.90765 -11.84258 -11.69706 -11.69431 -11.58359 -11.53137 -10.85437 -10.84597 -10.81338 -10.37779 -10.28520 -9.99029 -9.92747 -9.57925 -9.38654 -9.21856 -8.56317 -8.51508 -8.44569 -6.70927 -5.62723 -2.93909 1.42335 1.99496 2.19314 2.74140 3.45131 3.51081 3.53583 3.53928 3.73328 3.79913 3.99189 4.36711 4.40137 4.58140 4.71474 4.80426 4.92915 5.02963 5.16087 5.28172 5.32661 5.43260 5.47866 5.57513 5.70379 5.81479 5.83027 5.89027 6.09200 6.21525 6.23770 6.38771 6.43017 6.48319 6.62316 6.76799 6.91214 7.08069 7.19853 7.35508 7.63998 7.66144 7.89202 8.01480 8.34811 8.60884 9.32113 9.92326 10.58542 11.49519 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.003845 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.877766 B = 7280.988442 C = 8452.964897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.155 3.845 3 N -0.684 5.684 4 C 0.603 3.397 5 O -0.525 6.525 6 C 0.061 3.939 7 C -0.225 4.225 8 C 0.258 3.742 9 N -0.396 5.396 10 N -0.241 5.241 11 C 0.128 3.872 12 C -0.174 4.174 13 C 0.049 3.951 14 O -0.287 6.287 15 C -0.146 4.146 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.218 4.218 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.924 5.924 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.293 1.293 26 C 0.130 3.870 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.404 0.596 31 H 0.165 0.835 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.249 0.751 43 H 0.057 0.943 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 20.688 -2.805 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.069 3.931 3 N -0.334 5.334 4 C 0.385 3.615 5 O -0.399 6.399 6 C -0.107 4.107 7 C -0.255 4.255 8 C 0.092 3.908 9 N -0.194 5.194 10 N -0.071 5.071 11 C 0.007 3.993 12 C -0.213 4.213 13 C -0.027 4.027 14 O -0.194 6.194 15 C -0.184 4.184 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.346 4.346 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.573 5.573 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.220 1.220 26 C 0.004 3.996 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.239 0.761 31 H 0.183 0.817 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.054 20.331 -3.083 21.436 hybrid contribution 1.129 0.285 0.689 1.353 sum -4.925 20.617 -2.394 21.332 Atomic orbital electron populations 1.21998 0.94209 1.02251 1.02364 1.21554 0.92645 0.80422 0.98524 1.45666 1.53262 1.12445 1.22038 1.16752 0.79993 0.81992 0.82721 1.90754 1.39263 1.75011 1.34916 1.22144 0.99006 0.95864 0.93701 1.20197 1.12189 0.88998 1.04111 1.19415 0.97947 0.88001 0.85429 1.49276 1.43695 1.10600 1.15785 1.77622 1.18722 0.88871 1.21931 1.21952 0.95750 0.84017 0.97565 1.22638 1.05401 0.96844 0.96389 1.23110 0.91074 0.94582 0.93915 1.86647 1.54194 1.23501 1.55060 1.23222 1.00492 0.98850 0.95876 1.21152 0.90017 0.99889 0.83712 1.44447 1.07807 1.78835 1.01819 1.19127 0.89363 1.37106 0.89051 0.90508 1.24747 0.97686 1.02217 0.95972 1.69959 1.23898 1.54302 1.09143 0.86071 0.82524 0.77630 0.79787 1.20531 1.21836 1.21980 1.21907 0.87549 0.94928 0.95260 0.93055 0.91686 0.90937 0.76084 0.81720 0.89045 0.87826 0.87160 0.89260 0.90828 0.86279 0.90756 0.91718 0.93663 0.93794 0.94028 0.92501 0.95538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.62 37.16 0.32 -2.05 16 2 C 0.15 2.90 0.82 -129.67 -0.11 2.79 16 3 N -0.68 -12.53 5.17 -46.59 -0.24 -12.77 16 4 C 0.60 11.46 7.22 -12.38 -0.09 11.37 16 5 O -0.53 -10.97 13.67 5.30 0.07 -10.90 16 6 C 0.06 1.05 7.10 -82.71 -0.59 0.46 16 7 C -0.23 -3.55 10.58 -39.62 -0.42 -3.97 16 8 C 0.26 3.52 7.57 -16.72 -0.13 3.39 16 9 N -0.40 -5.15 4.08 -60.93 -0.25 -5.40 16 10 N -0.24 -3.89 12.32 33.43 0.41 -3.47 16 11 C 0.13 1.00 7.41 -3.65 -0.03 0.97 16 12 C -0.17 -0.85 6.16 -26.34 -0.16 -1.01 16 13 C 0.05 0.31 7.00 37.27 0.26 0.57 16 14 O -0.29 -3.19 10.65 -19.84 -0.21 -3.40 16 15 C -0.15 -2.70 5.99 -24.90 -0.15 -2.85 16 16 C 0.18 4.33 5.37 -3.07 -0.02 4.31 16 17 N -0.60 -15.99 3.39 -170.08 -0.58 -16.56 16 18 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 19 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -27.62 10.31 55.49 0.57 -27.05 16 22 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 26 C 0.13 2.97 6.11 -2.53 -0.02 2.95 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 29 H 0.07 1.23 6.45 -51.92 -0.34 0.90 16 30 H 0.40 7.02 8.18 -40.82 -0.33 6.69 16 31 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 39 H 0.06 1.05 8.05 -51.92 -0.42 0.63 16 40 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 41 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.06 1.40 6.31 -51.93 -0.33 1.07 16 44 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -35.30 355.44 -7.63 -42.93 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.37 Total: 3.34 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -1.37 Total: 10.02 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -0.08 Total: -65.26 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.14 Total: -14.30 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.30 -7.63 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046470051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.378 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds