Wall clock time and date at job start Tue Mar 31 2020 12:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 110.88691 * 2 1 4 4 C 1.34777 * 120.00012 * 62.42607 * 3 2 1 5 5 O 1.21577 * 120.00278 * 0.02562 * 4 3 2 6 6 C 1.47723 * 120.00162 * 180.02562 * 4 3 2 7 7 C 1.41292 * 125.95388 * 179.71664 * 6 4 3 8 8 C 1.34856 * 107.70515 * 180.22368 * 7 6 4 9 9 N 1.36399 * 107.92464 * 0.09880 * 8 7 6 10 10 N 1.32124 * 125.94893 * 0.02733 * 6 4 3 11 11 C 1.46723 * 123.62196 * 179.81374 * 9 8 7 12 12 C 1.53530 * 107.96404 * 343.07100 * 11 9 8 13 13 C 1.53223 * 109.31176 * 47.25906 * 12 11 9 14 14 O 1.36031 * 128.63592 * 180.20477 * 8 7 6 15 15 C 1.55150 * 111.03840 * 236.09190 * 2 1 3 16 16 C 1.54320 * 102.94667 * 206.40917 * 15 2 1 17 17 N 1.47020 * 107.26825 * 22.19471 * 16 15 2 18 18 C 1.36937 * 125.64844 * 181.02282 * 17 16 15 19 19 H 1.08005 * 120.00349 * 180.02562 * 18 17 16 20 20 C 1.38815 * 119.99701 * 0.04460 * 18 17 16 21 21 N 1.31610 * 120.00167 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99573 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47210 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46800 * 120.00039 * 22 20 18 25 25 H 1.48500 * 109.46963 * 239.99863 * 22 20 18 26 26 C 1.47424 * 108.70449 * 1.05803 * 17 16 15 27 27 H 1.08993 * 109.47379 * 60.69721 * 1 2 3 28 28 H 1.09002 * 109.47192 * 180.70558 * 1 2 3 29 29 H 1.09008 * 109.46934 * 300.70365 * 1 2 3 30 30 H 0.96996 * 119.99833 * 242.43065 * 3 2 1 31 31 H 1.07998 * 126.14311 * 0.19867 * 7 6 4 32 32 H 1.09004 * 109.76170 * 102.68947 * 11 9 8 33 33 H 1.08996 * 109.76440 * 223.45337 * 11 9 8 34 34 H 1.09001 * 109.49423 * 167.20911 * 12 11 9 35 35 H 1.09005 * 109.49917 * 287.27133 * 12 11 9 36 36 H 1.09003 * 109.50473 * 55.33897 * 13 12 11 37 37 H 1.08998 * 109.50568 * 175.46289 * 13 12 11 38 38 H 1.08999 * 110.72339 * 324.77817 * 15 2 1 39 39 H 1.09008 * 110.71867 * 88.04447 * 15 2 1 40 40 H 1.09001 * 109.88222 * 262.77648 * 16 15 2 41 41 H 1.08994 * 110.01348 * 141.68166 * 16 15 2 42 42 H 0.97000 * 119.99855 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.36592 * 217.02989 * 26 17 16 44 44 H 1.09000 * 110.45717 * 94.76091 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1161 1.7967 1.9682 6 6 2.3140 3.5713 1.0344 7 6 2.1103 4.5369 2.0456 8 6 2.7467 5.6649 1.6696 9 7 3.3347 5.4323 0.4611 10 7 3.0522 4.1198 0.0858 11 6 4.1172 6.4364 -0.2684 12 6 3.7889 7.8144 0.3238 13 6 3.8551 7.7377 1.8527 14 8 2.8298 6.8527 2.3275 15 6 2.0870 -0.8078 -1.2018 16 6 3.4683 -1.2733 -0.6951 17 7 3.4275 -1.2420 0.7742 18 6 4.4642 -1.5649 1.6085 19 1 4.3331 -1.5100 2.6791 20 6 5.6839 -1.9626 1.0780 21 7 5.8436 -2.0296 -0.2266 22 14 7.0984 -2.4025 2.2162 23 1 6.6651 -2.2457 3.6278 24 1 7.5070 -3.8099 1.9766 25 1 8.2477 -1.5009 1.9486 26 6 2.0853 -0.8061 1.2006 27 1 -0.3634 0.5029 -0.8961 28 1 -0.3634 -1.0276 0.0127 29 1 -0.3633 0.5248 0.8837 30 1 2.5885 1.6832 -0.7446 31 1 1.5461 4.3968 2.9557 32 1 5.1812 6.2297 -0.1529 33 1 3.8497 6.4160 -1.3248 34 1 4.5122 8.5464 -0.0355 35 1 2.7863 8.1127 0.0170 36 1 4.8313 7.3596 2.1562 37 1 3.7020 8.7313 2.2739 38 1 1.4481 -1.6634 -1.4207 39 1 2.1930 -0.1699 -2.0794 40 1 4.2432 -0.5985 -1.0589 41 1 3.6693 -2.2879 -1.0388 42 1 6.6958 -2.3079 -0.5972 43 1 2.1554 -0.1714 2.0840 44 1 1.4512 -1.6691 1.4040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046470051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:13 Heat of formation + Delta-G solvation = 17.640613 kcal Electronic energy + Delta-G solvation = -27612.041938 eV Core-core repulsion = 23759.609439 eV Total energy + Delta-G solvation = -3852.432499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.90929 -41.18521 -39.59431 -38.65925 -35.71466 -35.65966 -33.76012 -32.25958 -31.34005 -30.57078 -30.31482 -27.54503 -27.46267 -25.63423 -24.99440 -23.82682 -22.22739 -21.37152 -20.95629 -20.34398 -19.48381 -18.81992 -17.79422 -17.29694 -17.11074 -16.69360 -16.68774 -16.33220 -15.96457 -15.77061 -15.59058 -15.43963 -15.11454 -14.82749 -14.31306 -14.16290 -13.87487 -13.54250 -13.49415 -13.32244 -13.09221 -12.85594 -12.74609 -12.62670 -12.42452 -12.14751 -12.13629 -12.02933 -11.97645 -11.86525 -11.70494 -11.58029 -10.92479 -10.71017 -10.30306 -9.99459 -9.60006 -8.85394 -7.85252 -5.18661 0.21017 1.01703 1.08319 1.42390 1.43126 1.54010 1.81159 2.28142 2.35932 2.48193 3.03438 3.32882 3.48940 3.54968 3.62263 3.73361 3.95095 3.99390 4.05874 4.19504 4.20109 4.28745 4.43828 4.52216 4.57618 4.65357 4.69093 4.71919 4.80390 4.89780 4.90960 4.95458 5.06034 5.06426 5.09376 5.25126 5.38647 5.43633 5.62630 5.68339 5.77759 6.16284 6.18145 6.20962 6.58962 7.12159 7.15817 7.78253 8.42662 9.24929 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.003845 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.877766 B = 7280.988442 C = 8452.964897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.163 3.837 3 N -0.683 5.683 4 C 0.600 3.400 5 O -0.552 6.552 6 C 0.037 3.963 7 C -0.254 4.254 8 C 0.271 3.729 9 N -0.386 5.386 10 N -0.257 5.257 11 C 0.109 3.891 12 C -0.161 4.161 13 C 0.034 3.966 14 O -0.296 6.296 15 C -0.127 4.127 16 C 0.185 3.815 17 N -0.621 5.621 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.060 4.060 21 N -0.946 5.946 22 Si 0.973 3.027 23 H -0.273 1.273 24 H -0.287 1.287 25 H -0.291 1.291 26 C 0.127 3.873 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.408 0.592 31 H 0.161 0.839 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.152 0.848 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.153 0.847 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.247 0.753 43 H 0.032 0.968 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 22.970 -3.697 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.076 3.924 3 N -0.333 5.333 4 C 0.384 3.616 5 O -0.429 6.429 6 C -0.129 4.129 7 C -0.284 4.284 8 C 0.104 3.896 9 N -0.185 5.185 10 N -0.089 5.089 11 C -0.009 4.009 12 C -0.199 4.199 13 C -0.040 4.040 14 O -0.204 6.204 15 C -0.165 4.165 16 C 0.060 3.940 17 N -0.348 5.348 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.253 4.253 21 N -0.595 5.595 22 Si 0.802 3.198 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.218 1.218 26 C 0.001 3.999 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.244 0.756 31 H 0.179 0.821 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.170 0.830 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.171 0.829 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.985 22.642 -3.989 23.757 hybrid contribution 1.193 -0.274 0.991 1.575 sum -4.792 22.368 -2.999 23.071 Atomic orbital electron populations 1.21930 0.91366 1.03529 1.02988 1.21512 0.94516 0.80093 0.96230 1.45672 1.53276 1.12201 1.22137 1.17028 0.79519 0.82774 0.82287 1.90723 1.40520 1.75844 1.35766 1.21895 1.00577 0.95416 0.95014 1.20266 1.13786 0.90036 1.04309 1.19313 0.96509 0.88368 0.85440 1.49686 1.42941 1.10090 1.15754 1.77506 1.18762 0.90630 1.21990 1.22556 0.95829 0.84238 0.98279 1.22671 1.06688 0.95619 0.94957 1.23615 0.90064 0.94980 0.95338 1.86671 1.55755 1.22745 1.55208 1.23107 0.96914 1.00059 0.96464 1.20937 0.92858 0.97431 0.82731 1.44699 1.08599 1.78821 1.02641 1.19386 0.90754 1.37516 0.89338 0.91321 1.25524 0.99902 1.02370 0.97523 1.70159 1.24147 1.54694 1.10479 0.85083 0.79205 0.77237 0.78281 1.19773 1.21338 1.21778 1.22022 0.86335 0.95235 0.96327 0.90427 0.90011 0.92359 0.75585 0.82097 0.87864 0.86416 0.82981 0.89270 0.90420 0.82919 0.88330 0.88718 0.96874 0.96994 0.94373 0.94987 0.94974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.62 71.98 0.62 -3.55 16 2 C 0.16 6.00 0.82 4.99 0.00 6.00 16 3 N -0.68 -25.19 5.17 -419.58 -2.17 -27.36 16 4 C 0.60 23.51 7.22 86.75 0.63 24.14 16 5 O -0.55 -24.01 13.67 -3.96 -0.05 -24.06 16 6 C 0.04 1.33 7.10 42.36 0.30 1.63 16 7 C -0.25 -8.25 10.58 22.24 0.24 -8.02 16 8 C 0.27 7.26 7.57 83.21 0.63 7.89 16 9 N -0.39 -9.63 4.08 -457.16 -1.87 -11.50 16 10 N -0.26 -8.30 12.32 -48.15 -0.59 -8.89 16 11 C 0.11 1.43 7.41 86.51 0.64 2.07 16 12 C -0.16 -0.96 6.16 30.85 0.19 -0.77 16 13 C 0.03 0.32 7.00 72.06 0.50 0.82 16 14 O -0.30 -6.13 10.65 -93.90 -1.00 -7.13 16 15 C -0.13 -4.53 5.99 31.78 0.19 -4.34 16 16 C 0.19 9.24 5.37 86.73 0.47 9.71 16 17 N -0.62 -33.93 3.39 -692.00 -2.35 -36.28 16 18 C -0.24 -14.49 10.28 84.03 0.86 -13.62 16 19 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 21 N -0.95 -57.91 10.31 21.65 0.22 -57.69 16 22 Si 0.97 47.98 29.55 68.60 2.03 50.01 16 23 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 C 0.13 5.90 6.11 86.86 0.53 6.43 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 2.16 8.13 -2.39 -0.02 2.15 16 29 H 0.06 1.94 6.45 -2.38 -0.02 1.92 16 30 H 0.41 14.22 8.18 -92.71 -0.76 13.46 16 31 H 0.16 5.11 8.06 -2.91 -0.02 5.08 16 32 H 0.10 1.14 8.14 -2.38 -0.02 1.13 16 33 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.15 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.10 3.08 8.04 -2.39 -0.02 3.06 16 39 H 0.09 2.84 8.05 -2.38 -0.02 2.82 16 40 H 0.01 0.72 7.38 -2.39 -0.02 0.71 16 41 H 0.01 0.66 7.50 -2.39 -0.02 0.64 16 42 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.03 1.64 6.31 -2.39 -0.02 1.62 16 44 H 0.03 1.46 8.03 -2.39 -0.02 1.44 16 Total: -1.00 -80.77 355.44 0.75 -80.02 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.27 Total: 17.59 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 6.27 Total: 25.29 kcal Atomic # 7 Polarization: -134.96 SS G_CDS: -6.75 Total: -141.72 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.05 Total: -31.19 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -80.77 0.75 -80.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046470051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.661 kcal (2) G-P(sol) polarization free energy of solvation -80.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds