Wall clock time and date at job start Tue Mar 31 2020 12:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 110.63769 * 2 1 4 4 C 1.34772 * 119.99895 * 298.58078 * 3 2 1 5 5 O 1.21575 * 120.00111 * 359.73102 * 4 3 2 6 6 C 1.47719 * 120.00239 * 179.72721 * 4 3 2 7 7 C 1.41293 * 125.95312 * 180.02562 * 6 4 3 8 8 C 1.34862 * 107.70445 * 179.97438 * 7 6 4 9 9 N 1.36391 * 107.92531 * 0.11447 * 8 7 6 10 10 N 1.32122 * 125.95172 * 359.69742 * 6 4 3 11 11 C 1.46724 * 123.62173 * 179.76894 * 9 8 7 12 12 C 1.53527 * 107.96105 * 343.02929 * 11 9 8 13 13 C 1.53237 * 109.29852 * 47.28850 * 12 11 9 14 14 O 1.36034 * 128.63392 * 180.16086 * 8 7 6 15 15 C 1.55162 * 110.86848 * 123.24437 * 2 1 3 16 16 C 1.54910 * 101.57833 * 153.93850 * 15 2 1 17 17 N 1.47419 * 104.83362 * 322.98888 * 16 15 2 18 18 C 1.36933 * 125.64901 * 204.09088 * 17 16 15 19 19 H 1.08003 * 120.00265 * 169.98220 * 18 17 16 20 20 C 1.38810 * 120.00149 * 349.99003 * 18 17 16 21 21 N 1.31618 * 119.99914 * 350.41405 * 20 18 17 22 22 Si 1.86799 * 120.00121 * 170.41989 * 20 18 17 23 23 H 1.48502 * 109.47489 * 94.13696 * 22 20 18 24 24 H 1.48504 * 109.47019 * 214.13455 * 22 20 18 25 25 H 1.48494 * 109.47294 * 334.13588 * 22 20 18 26 26 C 1.47022 * 108.70507 * 24.13067 * 17 16 15 27 27 H 1.09001 * 109.46964 * 59.30745 * 1 2 3 28 28 H 1.09008 * 109.47011 * 179.30075 * 1 2 3 29 29 H 1.08996 * 109.47416 * 299.30294 * 1 2 3 30 30 H 0.97002 * 119.99889 * 118.31383 * 3 2 1 31 31 H 1.07996 * 126.14662 * 359.90897 * 7 6 4 32 32 H 1.09003 * 109.76415 * 223.41828 * 11 9 8 33 33 H 1.08997 * 109.80565 * 102.67575 * 11 9 8 34 34 H 1.09002 * 109.50331 * 287.34275 * 12 11 9 35 35 H 1.08998 * 109.50468 * 167.23590 * 12 11 9 36 36 H 1.08996 * 109.49988 * 175.46253 * 13 12 11 37 37 H 1.08996 * 109.49729 * 55.34760 * 13 12 11 38 38 H 1.09003 * 111.00341 * 272.00962 * 15 2 1 39 39 H 1.08997 * 111.00497 * 35.86488 * 15 2 1 40 40 H 1.09002 * 110.36635 * 204.14886 * 16 15 2 41 41 H 1.09003 * 110.36426 * 81.82605 * 16 15 2 42 42 H 0.97003 * 120.00032 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.87830 * 239.52717 * 26 17 16 44 44 H 1.08992 * 110.01278 * 118.42980 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7613 2.1984 -1.0249 5 8 1.0798 1.8055 -1.9519 6 6 2.2769 3.5826 -1.0221 7 6 2.0562 4.5521 -2.0260 8 6 2.6912 5.6816 -1.6520 9 7 3.2988 5.4446 -0.4541 10 7 3.0198 4.1318 -0.0775 11 6 4.0933 6.4461 0.2660 12 6 4.4559 7.5632 -0.7229 13 6 3.2021 7.9782 -1.4999 14 8 2.7546 6.8751 -2.3016 15 6 2.0828 -0.7948 1.2126 16 6 3.4673 -1.2455 0.6839 17 7 3.2471 -1.5462 -0.7424 18 6 4.0078 -2.3900 -1.5068 19 1 3.6749 -2.6713 -2.4951 20 6 5.2067 -2.8842 -1.0116 21 7 5.7063 -2.4006 0.1059 22 14 6.1110 -4.2355 -1.9312 23 1 7.1219 -3.6289 -2.8341 24 1 6.7893 -5.1284 -0.9576 25 1 5.1408 -5.0235 -2.7329 26 6 2.0761 -0.7892 -1.2085 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0277 -0.0125 29 1 -0.3634 0.5029 0.8961 30 1 2.5902 1.6844 0.7396 31 1 1.4830 4.4133 -2.9307 32 1 5.0030 5.9865 0.6525 33 1 3.5100 6.8578 1.0895 34 1 5.2123 7.2013 -1.4193 35 1 4.8454 8.4215 -0.1755 36 1 3.4373 8.8249 -2.1447 37 1 2.4167 8.2610 -0.7991 38 1 2.1886 -0.1514 2.0860 39 1 1.4514 -1.6546 1.4367 40 1 3.8031 -2.1378 1.2123 41 1 4.1954 -0.4418 0.7941 42 1 6.5443 -2.7457 0.4518 43 1 1.3142 -1.4756 -1.5779 44 1 2.3687 -0.0995 -2.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046470052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:18 Heat of formation + Delta-G solvation = 44.040679 kcal Electronic energy + Delta-G solvation = -27403.324060 eV Core-core repulsion = 23552.036354 eV Total energy + Delta-G solvation = -3851.287706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93489 -39.80974 -38.62142 -37.08260 -34.97417 -33.92985 -32.05931 -31.01451 -29.83887 -29.52394 -28.61310 -26.77183 -25.62335 -24.31371 -23.53858 -22.75097 -20.46918 -20.19802 -20.01923 -18.91351 -18.38094 -16.97779 -16.75744 -16.32008 -15.86597 -15.59391 -15.17891 -15.16379 -14.71888 -14.58198 -14.23711 -13.97888 -13.69223 -13.50313 -13.01351 -12.82578 -12.67649 -12.20530 -12.07872 -11.85659 -11.73403 -11.63386 -11.59080 -11.51295 -10.92275 -10.89603 -10.74897 -10.36851 -10.32303 -10.03833 -9.97664 -9.62650 -9.41104 -9.27269 -8.57230 -8.55120 -8.49546 -6.69080 -5.66638 -2.97379 1.36599 1.94792 2.14406 2.69236 3.45263 3.47426 3.50970 3.53616 3.67033 3.76058 3.96490 4.32535 4.36885 4.57295 4.66569 4.73783 4.89247 5.01215 5.16033 5.26715 5.28181 5.40915 5.45332 5.57168 5.62650 5.78355 5.80622 5.84696 6.09321 6.22399 6.27464 6.33884 6.40302 6.50623 6.58102 6.77727 6.92147 7.03509 7.19885 7.30846 7.54480 7.63112 7.84799 7.94774 8.34267 8.54555 9.28566 9.90473 10.58531 11.46903 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.003252 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.547645 B = 8608.327622 C = 9382.898788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 N -0.691 5.691 4 C 0.601 3.399 5 O -0.522 6.522 6 C 0.060 3.940 7 C -0.225 4.225 8 C 0.258 3.742 9 N -0.396 5.396 10 N -0.242 5.242 11 C 0.128 3.872 12 C -0.176 4.176 13 C 0.049 3.951 14 O -0.286 6.286 15 C -0.147 4.147 16 C 0.174 3.826 17 N -0.603 5.603 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.135 3.865 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.404 0.596 31 H 0.166 0.834 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.026 0.974 42 H 0.251 0.749 43 H 0.032 0.968 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 22.445 3.473 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.074 3.926 3 N -0.342 5.342 4 C 0.384 3.616 5 O -0.396 6.396 6 C -0.108 4.108 7 C -0.255 4.255 8 C 0.093 3.907 9 N -0.193 5.193 10 N -0.073 5.073 11 C 0.008 3.992 12 C -0.214 4.214 13 C -0.026 4.026 14 O -0.193 6.193 15 C -0.186 4.186 16 C 0.049 3.951 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.093 0.907 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.740 3.260 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.009 3.991 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.239 0.761 31 H 0.183 0.817 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.655 22.019 3.709 23.035 hybrid contribution 0.821 -0.051 -0.631 1.037 sum -4.834 21.968 3.078 22.703 Atomic orbital electron populations 1.22047 0.94077 1.02371 1.02365 1.21390 0.93072 0.80028 0.98148 1.45842 1.52965 1.12387 1.22957 1.16778 0.80106 0.82019 0.82715 1.90774 1.38533 1.75261 1.34993 1.22142 0.99193 0.95786 0.93682 1.20211 1.10759 0.89944 1.04588 1.19417 0.96349 0.88396 0.86551 1.49280 1.42248 1.10533 1.17269 1.77611 1.18986 0.88837 1.21821 1.21951 0.96342 0.86387 0.94570 1.22652 0.99370 0.99528 0.99878 1.23105 0.95721 0.88002 0.95769 1.86659 1.83659 1.13607 1.35409 1.23346 1.01068 0.98974 0.95246 1.21399 0.89531 0.99407 0.84796 1.44485 1.30857 1.50783 1.06798 1.19042 0.99492 1.18193 0.98338 0.90658 1.24792 0.96851 1.00740 0.98202 1.69953 1.20510 1.43987 1.22377 0.86134 0.79598 0.81676 0.78575 1.21756 1.21712 1.20602 1.21622 0.90431 0.93143 0.93927 0.90879 0.91589 0.93045 0.76081 0.81676 0.87691 0.89169 0.89095 0.87120 0.86265 0.90952 0.91678 0.90412 0.91177 0.95630 0.93893 0.95022 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.45 37.16 0.31 -2.10 16 2 C 0.16 2.98 0.81 -129.98 -0.11 2.88 16 3 N -0.69 -12.32 5.14 -46.88 -0.24 -12.57 16 4 C 0.60 11.14 7.05 -12.39 -0.09 11.05 16 5 O -0.52 -10.76 13.81 5.30 0.07 -10.68 16 6 C 0.06 1.00 7.10 -82.71 -0.59 0.41 16 7 C -0.23 -3.43 10.58 -39.62 -0.42 -3.85 16 8 C 0.26 3.39 7.57 -16.72 -0.13 3.27 16 9 N -0.40 -4.92 4.08 -60.93 -0.25 -5.16 16 10 N -0.24 -3.73 12.32 33.43 0.41 -3.32 16 11 C 0.13 0.93 7.41 -3.65 -0.03 0.90 16 12 C -0.18 -0.83 6.16 -26.34 -0.16 -0.99 16 13 C 0.05 0.28 7.00 37.28 0.26 0.54 16 14 O -0.29 -3.06 10.65 -19.85 -0.21 -3.27 16 15 C -0.15 -2.74 6.09 -24.58 -0.15 -2.89 16 16 C 0.17 4.23 5.40 -2.53 -0.01 4.22 16 17 N -0.60 -16.10 3.39 -170.08 -0.58 -16.68 16 18 C -0.22 -6.47 10.24 -15.06 -0.15 -6.63 16 19 H 0.08 2.15 7.85 -52.48 -0.41 1.74 16 20 C -0.01 -0.28 5.40 -17.43 -0.09 -0.38 16 21 N -0.92 -27.53 10.68 55.49 0.59 -26.94 16 22 Si 0.91 22.75 29.56 -169.99 -5.03 17.73 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 C 0.14 3.13 6.14 -3.06 -0.02 3.11 16 27 H 0.07 1.26 6.36 -51.93 -0.33 0.93 16 28 H 0.07 1.00 8.12 -51.92 -0.42 0.58 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 6.70 8.16 -40.82 -0.33 6.36 16 31 H 0.17 2.38 8.06 -52.49 -0.42 1.96 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 39 H 0.08 1.37 8.05 -51.93 -0.42 0.96 16 40 H 0.07 1.88 6.94 -51.93 -0.36 1.52 16 41 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.03 0.73 7.80 -51.93 -0.41 0.32 16 44 H 0.04 0.92 6.48 -51.93 -0.34 0.58 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -35.45 355.60 -7.61 -43.05 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.37 Total: 2.94 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -1.37 Total: 9.54 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -0.06 Total: -64.67 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.14 Total: -13.95 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.45 -7.61 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046470052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.095 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds