Wall clock time and date at job start Tue Mar 31 2020 12:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 110.63769 * 2 1 4 4 C 1.34772 * 119.99895 * 298.58078 * 3 2 1 5 5 O 1.21575 * 120.00111 * 359.73102 * 4 3 2 6 6 C 1.47719 * 120.00239 * 179.72721 * 4 3 2 7 7 C 1.41293 * 125.95312 * 180.02562 * 6 4 3 8 8 C 1.34862 * 107.70445 * 179.97438 * 7 6 4 9 9 N 1.36391 * 107.92531 * 0.11447 * 8 7 6 10 10 N 1.32122 * 125.95172 * 359.69742 * 6 4 3 11 11 C 1.46724 * 123.62173 * 179.76894 * 9 8 7 12 12 C 1.53527 * 107.96105 * 343.02929 * 11 9 8 13 13 C 1.53237 * 109.29852 * 47.28850 * 12 11 9 14 14 O 1.36034 * 128.63392 * 180.16086 * 8 7 6 15 15 C 1.55162 * 110.86848 * 123.24437 * 2 1 3 16 16 C 1.54910 * 101.57833 * 153.93850 * 15 2 1 17 17 N 1.47419 * 104.83362 * 322.98888 * 16 15 2 18 18 C 1.36933 * 125.64901 * 204.09088 * 17 16 15 19 19 H 1.08003 * 120.00265 * 169.98220 * 18 17 16 20 20 C 1.38810 * 120.00149 * 349.99003 * 18 17 16 21 21 N 1.31618 * 119.99914 * 350.41405 * 20 18 17 22 22 Si 1.86799 * 120.00121 * 170.41989 * 20 18 17 23 23 H 1.48502 * 109.47489 * 94.13696 * 22 20 18 24 24 H 1.48504 * 109.47019 * 214.13455 * 22 20 18 25 25 H 1.48494 * 109.47294 * 334.13588 * 22 20 18 26 26 C 1.47022 * 108.70507 * 24.13067 * 17 16 15 27 27 H 1.09001 * 109.46964 * 59.30745 * 1 2 3 28 28 H 1.09008 * 109.47011 * 179.30075 * 1 2 3 29 29 H 1.08996 * 109.47416 * 299.30294 * 1 2 3 30 30 H 0.97002 * 119.99889 * 118.31383 * 3 2 1 31 31 H 1.07996 * 126.14662 * 359.90897 * 7 6 4 32 32 H 1.09003 * 109.76415 * 223.41828 * 11 9 8 33 33 H 1.08997 * 109.80565 * 102.67575 * 11 9 8 34 34 H 1.09002 * 109.50331 * 287.34275 * 12 11 9 35 35 H 1.08998 * 109.50468 * 167.23590 * 12 11 9 36 36 H 1.08996 * 109.49988 * 175.46253 * 13 12 11 37 37 H 1.08996 * 109.49729 * 55.34760 * 13 12 11 38 38 H 1.09003 * 111.00341 * 272.00962 * 15 2 1 39 39 H 1.08997 * 111.00497 * 35.86488 * 15 2 1 40 40 H 1.09002 * 110.36635 * 204.14886 * 16 15 2 41 41 H 1.09003 * 110.36426 * 81.82605 * 16 15 2 42 42 H 0.97003 * 120.00032 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.87830 * 239.52717 * 26 17 16 44 44 H 1.08992 * 110.01278 * 118.42980 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7613 2.1984 -1.0249 5 8 1.0798 1.8055 -1.9519 6 6 2.2769 3.5826 -1.0221 7 6 2.0562 4.5521 -2.0260 8 6 2.6912 5.6816 -1.6520 9 7 3.2988 5.4446 -0.4541 10 7 3.0198 4.1318 -0.0775 11 6 4.0933 6.4461 0.2660 12 6 4.4559 7.5632 -0.7229 13 6 3.2021 7.9782 -1.4999 14 8 2.7546 6.8751 -2.3016 15 6 2.0828 -0.7948 1.2126 16 6 3.4673 -1.2455 0.6839 17 7 3.2471 -1.5462 -0.7424 18 6 4.0078 -2.3900 -1.5068 19 1 3.6749 -2.6713 -2.4951 20 6 5.2067 -2.8842 -1.0116 21 7 5.7063 -2.4006 0.1059 22 14 6.1110 -4.2355 -1.9312 23 1 7.1219 -3.6289 -2.8341 24 1 6.7893 -5.1284 -0.9576 25 1 5.1408 -5.0235 -2.7329 26 6 2.0761 -0.7892 -1.2085 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0277 -0.0125 29 1 -0.3634 0.5029 0.8961 30 1 2.5902 1.6844 0.7396 31 1 1.4830 4.4133 -2.9307 32 1 5.0030 5.9865 0.6525 33 1 3.5100 6.8578 1.0895 34 1 5.2123 7.2013 -1.4193 35 1 4.8454 8.4215 -0.1755 36 1 3.4373 8.8249 -2.1447 37 1 2.4167 8.2610 -0.7991 38 1 2.1886 -0.1514 2.0860 39 1 1.4514 -1.6546 1.4367 40 1 3.8031 -2.1378 1.2123 41 1 4.1954 -0.4418 0.7941 42 1 6.5443 -2.7457 0.4518 43 1 1.3142 -1.4756 -1.5779 44 1 2.3687 -0.0995 -2.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046470052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:17 Heat of formation + Delta-G solvation = 17.034268 kcal Electronic energy + Delta-G solvation = -27404.495145 eV Core-core repulsion = 23552.036354 eV Total energy + Delta-G solvation = -3852.458792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.91861 -41.24054 -39.60486 -38.69005 -35.75501 -35.66800 -33.77590 -32.28165 -31.30990 -30.57657 -30.35409 -27.58059 -27.47378 -25.63085 -24.97066 -23.81735 -22.32347 -21.42667 -20.95005 -20.34854 -19.48492 -18.82782 -17.80744 -17.29807 -17.14636 -16.74681 -16.68321 -16.26150 -16.07284 -15.76942 -15.58229 -15.44322 -15.05020 -14.76730 -14.34298 -14.24240 -14.03467 -13.62167 -13.38441 -13.28679 -13.08322 -12.92147 -12.72199 -12.63583 -12.43369 -12.16532 -12.12392 -12.02905 -11.94004 -11.87131 -11.73464 -11.66337 -10.96697 -10.68211 -10.31592 -10.03409 -9.60460 -8.85003 -7.88697 -5.22430 0.19295 1.02048 1.06442 1.44609 1.46018 1.56364 1.80304 2.22594 2.34887 2.49242 3.02048 3.30037 3.49021 3.55350 3.64102 3.70479 3.95229 3.98428 4.00918 4.16902 4.18841 4.29694 4.43351 4.52521 4.58361 4.63778 4.68246 4.69428 4.79972 4.87259 4.91443 4.93357 5.04172 5.06100 5.09983 5.24615 5.36166 5.43133 5.58942 5.61991 5.73050 6.15349 6.17546 6.20370 6.56401 7.08104 7.13419 7.75594 8.42410 9.23091 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.003252 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.547645 B = 8608.327622 C = 9382.898788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.167 3.833 3 N -0.688 5.688 4 C 0.599 3.401 5 O -0.551 6.551 6 C 0.037 3.963 7 C -0.254 4.254 8 C 0.272 3.728 9 N -0.385 5.385 10 N -0.256 5.256 11 C 0.111 3.889 12 C -0.165 4.165 13 C 0.036 3.964 14 O -0.298 6.298 15 C -0.127 4.127 16 C 0.179 3.821 17 N -0.622 5.622 18 C -0.247 4.247 19 H 0.070 0.930 20 C -0.060 4.060 21 N -0.944 5.944 22 Si 0.978 3.022 23 H -0.289 1.289 24 H -0.287 1.287 25 H -0.271 1.271 26 C 0.134 3.866 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.410 0.590 31 H 0.161 0.839 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.040 0.960 41 H -0.002 1.002 42 H 0.249 0.751 43 H 0.032 0.968 44 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 24.508 4.645 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.081 3.919 3 N -0.339 5.339 4 C 0.383 3.617 5 O -0.427 6.427 6 C -0.129 4.129 7 C -0.284 4.284 8 C 0.105 3.895 9 N -0.184 5.184 10 N -0.088 5.088 11 C -0.008 4.008 12 C -0.204 4.204 13 C -0.038 4.038 14 O -0.205 6.205 15 C -0.165 4.165 16 C 0.054 3.946 17 N -0.348 5.348 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.254 4.254 21 N -0.593 5.593 22 Si 0.805 3.195 23 H -0.216 1.216 24 H -0.213 1.213 25 H -0.195 1.195 26 C 0.008 3.992 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.247 0.753 31 H 0.179 0.821 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -5.763 24.117 4.900 25.276 hybrid contribution 0.944 -0.501 -1.015 1.474 sum -4.819 23.616 3.886 24.414 Atomic orbital electron populations 1.21974 0.91426 1.03363 1.03112 1.21312 0.94809 0.79925 0.95816 1.45797 1.53007 1.11918 1.23152 1.17058 0.79567 0.82839 0.82207 1.90743 1.39888 1.76134 1.35925 1.21846 1.00809 0.95216 0.95026 1.20275 1.12408 0.90944 1.04822 1.19303 0.95006 0.88864 0.86360 1.49694 1.41491 1.10044 1.17196 1.77497 1.18919 0.90550 1.21798 1.22555 0.96400 0.86013 0.95810 1.22692 0.98521 0.99834 0.99312 1.23615 0.96571 0.86953 0.96649 1.86679 1.83684 1.13638 1.36512 1.23219 0.97248 1.00042 0.96018 1.21226 0.92415 0.97157 0.83803 1.44788 1.31378 1.50831 1.07842 1.19358 1.00382 1.19150 0.98747 0.91165 1.25618 0.97610 1.02875 0.99267 1.70141 1.20623 1.44915 1.23581 0.85090 0.78211 0.78774 0.77382 1.21609 1.21293 1.19544 1.21706 0.89398 0.92773 0.95331 0.92262 0.90399 0.90209 0.75336 0.82134 0.87174 0.86627 0.90201 0.82812 0.83213 0.89498 0.88149 0.88702 0.94141 0.98430 0.94189 0.94982 0.97555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.45 71.98 0.61 -3.69 16 2 C 0.17 6.21 0.81 4.80 0.00 6.21 16 3 N -0.69 -24.73 5.14 -420.50 -2.16 -26.89 16 4 C 0.60 22.95 7.05 86.75 0.61 23.56 16 5 O -0.55 -23.74 13.81 -3.95 -0.05 -23.79 16 6 C 0.04 1.28 7.10 42.36 0.30 1.58 16 7 C -0.25 -8.01 10.58 22.25 0.24 -7.78 16 8 C 0.27 7.00 7.57 83.21 0.63 7.63 16 9 N -0.39 -9.13 4.08 -457.17 -1.87 -11.00 16 10 N -0.26 -7.87 12.32 -48.15 -0.59 -8.47 16 11 C 0.11 1.31 7.41 86.51 0.64 1.95 16 12 C -0.17 -0.97 6.16 30.85 0.19 -0.78 16 13 C 0.04 0.29 7.00 72.06 0.50 0.79 16 14 O -0.30 -5.90 10.65 -93.94 -1.00 -6.90 16 15 C -0.13 -4.54 6.09 31.99 0.19 -4.34 16 16 C 0.18 8.91 5.40 86.86 0.47 9.38 16 17 N -0.62 -34.27 3.39 -692.01 -2.35 -36.62 16 18 C -0.25 -14.85 10.24 84.03 0.86 -13.99 16 19 H 0.07 4.16 7.85 -2.91 -0.02 4.13 16 20 C -0.06 -3.56 5.40 84.86 0.46 -3.10 16 21 N -0.94 -57.87 10.68 21.65 0.23 -57.64 16 22 Si 0.98 47.53 29.56 68.60 2.03 49.56 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 C 0.13 6.39 6.14 86.73 0.53 6.92 16 27 H 0.06 2.01 6.36 -2.39 -0.02 2.00 16 28 H 0.08 2.20 8.12 -2.38 -0.02 2.18 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.41 13.57 8.16 -92.71 -0.76 12.81 16 31 H 0.16 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.10 2.92 8.04 -2.39 -0.02 2.90 16 39 H 0.09 3.13 8.05 -2.39 -0.02 3.11 16 40 H 0.04 2.23 6.94 -2.39 -0.02 2.21 16 41 H 0.00 -0.13 8.07 -2.39 -0.02 -0.15 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.03 1.51 7.80 -2.39 -0.02 1.49 16 44 H 0.01 0.34 6.48 -2.39 -0.02 0.33 16 Total: -1.00 -81.26 355.60 0.74 -80.52 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.27 Total: 16.89 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 6.24 Total: 24.34 kcal Atomic # 7 Polarization: -133.88 SS G_CDS: -6.74 Total: -140.61 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.06 Total: -30.69 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -81.26 0.74 -80.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046470052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.551 kcal (2) G-P(sol) polarization free energy of solvation -81.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds