Wall clock time and date at job start Tue Mar 31 2020 12:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38546 * 120.01306 * 2 1 4 4 C 1.40076 * 117.81784 * 180.25628 * 3 2 1 5 5 C 1.48136 * 121.14773 * 179.78678 * 4 3 2 6 6 O 1.21518 * 120.00018 * 174.58341 * 5 4 3 7 7 N 1.34773 * 119.99962 * 354.85836 * 5 4 3 8 8 C 1.46499 * 120.00036 * 179.71994 * 7 5 4 9 9 C 1.52998 * 109.46932 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.67972 * 301.26274 * 9 8 7 11 11 C 1.53296 * 109.67956 * 180.74767 * 9 8 7 12 12 O 1.42960 * 109.22497 * 187.97469 * 11 9 8 13 13 C 1.42963 * 114.16663 * 62.58276 * 12 11 9 14 14 C 1.53301 * 109.21991 * 297.42237 * 13 12 11 15 15 N 1.47155 * 108.41676 * 52.27982 * 14 13 12 16 16 C 1.36938 * 120.99655 * 129.50809 * 15 14 13 17 17 H 1.07999 * 120.00297 * 212.68017 * 16 15 14 18 18 C 1.38816 * 119.99219 * 32.67591 * 16 15 14 19 19 N 1.31616 * 120.00483 * 10.74212 * 18 16 15 20 20 Si 1.86805 * 119.99518 * 190.74091 * 18 16 15 21 21 H 1.48500 * 109.47208 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47124 * 120.00401 * 20 18 16 23 23 H 1.48502 * 109.47153 * 240.00184 * 20 18 16 24 24 C 1.39766 * 117.70348 * 359.52089 * 4 3 2 25 25 C 1.50704 * 120.17172 * 180.22515 * 24 4 3 26 26 N 1.31899 * 119.65945 * 0.24484 * 24 4 3 27 27 N 1.28277 * 122.32663 * 0.02562 * 26 24 4 28 28 H 1.08995 * 109.47520 * 270.22981 * 1 2 3 29 29 H 1.09000 * 109.47664 * 30.23725 * 1 2 3 30 30 H 1.09003 * 109.46846 * 150.23378 * 1 2 3 31 31 H 1.07995 * 121.09284 * 0.05686 * 3 2 1 32 32 H 0.97006 * 120.00182 * 359.72812 * 7 5 4 33 33 H 1.08996 * 109.47133 * 300.00167 * 8 7 5 34 34 H 1.08997 * 109.46590 * 60.00502 * 8 7 5 35 35 H 1.09002 * 109.51645 * 307.89792 * 11 9 8 36 36 H 1.09004 * 109.51676 * 68.00135 * 11 9 8 37 37 H 1.08993 * 109.51419 * 57.33885 * 13 12 11 38 38 H 1.09001 * 109.51582 * 177.49811 * 13 12 11 39 39 H 1.09002 * 109.67834 * 172.02846 * 14 13 12 40 40 H 1.09000 * 109.67948 * 292.57501 * 14 13 12 41 41 H 0.96991 * 119.99983 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47303 * 83.14761 * 25 24 4 43 43 H 1.08993 * 109.47108 * 203.14990 * 25 24 4 44 44 H 1.08998 * 109.47186 * 323.15245 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0055 5 6 4.4139 2.3836 -0.0106 6 8 5.6235 2.3154 0.0839 7 7 3.8127 3.5853 -0.1146 8 6 4.6175 4.8095 -0.1135 9 6 3.6971 6.0249 -0.2416 10 1 3.1183 5.9517 -1.1623 11 6 4.5358 7.3080 -0.2597 12 8 3.6656 8.4402 -0.1919 13 6 2.8940 8.5142 1.0094 14 6 1.9712 7.2928 1.0925 15 7 2.7866 6.0810 0.9131 16 6 2.7011 5.0366 1.7947 17 1 3.5728 4.4349 2.0052 18 6 1.4938 4.7516 2.4177 19 7 0.3885 5.3393 2.0114 20 14 1.4380 3.5336 3.8330 21 1 2.8051 3.0164 4.0952 22 1 0.9242 4.2120 5.0499 23 1 0.5405 2.4046 3.4795 24 6 4.2016 -0.1154 -0.0003 25 6 5.7037 -0.2378 -0.0008 26 7 3.4483 -1.1980 0.0045 27 7 2.1667 -1.1420 0.0042 28 1 -0.3634 0.0041 1.0276 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6782 2.1452 0.0009 32 1 2.8472 3.6397 -0.1901 33 1 5.1777 4.8751 0.8192 34 1 5.3115 4.7887 -0.9537 35 1 5.2094 7.3148 0.5972 36 1 5.1176 7.3497 -1.1805 37 1 3.5616 8.5252 1.8708 38 1 2.2938 9.4241 1.0012 39 1 1.4839 7.2666 2.0672 40 1 1.2181 7.3476 0.3064 41 1 -0.4551 5.1398 2.4465 42 1 6.0765 -0.1407 1.0189 43 1 5.9887 -1.2109 -0.4006 44 1 6.1323 0.5495 -0.6208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050938690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:03 Heat of formation + Delta-G solvation = 3.779373 kcal Electronic energy + Delta-G solvation = -28263.189508 eV Core-core repulsion = 24410.155941 eV Total energy + Delta-G solvation = -3853.033567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21939 -39.35502 -38.40999 -35.61708 -34.43288 -33.75061 -33.42254 -31.71866 -30.63829 -29.65217 -27.35785 -26.72569 -26.03581 -24.44636 -23.59347 -22.67477 -21.72911 -20.33425 -19.77809 -17.71525 -17.52543 -16.55415 -16.07526 -15.77966 -15.54696 -15.46221 -15.01449 -14.73330 -14.47072 -14.33467 -13.92512 -13.90492 -13.41431 -13.31520 -13.15549 -13.02447 -12.80691 -12.55420 -12.31303 -12.05953 -11.91359 -11.68847 -11.20265 -11.03872 -10.94418 -10.87131 -10.54017 -10.37705 -10.21426 -10.17189 -10.08675 -9.76846 -9.41368 -9.32680 -9.06243 -8.84571 -8.51793 -6.86744 -6.06864 -3.58389 0.45388 0.92160 2.97191 3.13580 3.25180 3.28646 3.35949 3.70700 3.99370 4.19034 4.36917 4.41932 4.49748 4.76266 4.92070 5.01793 5.10575 5.16378 5.35638 5.43056 5.55219 5.59416 5.62976 5.72101 5.77308 5.82065 5.83179 5.89062 5.93258 6.04452 6.07550 6.09611 6.21149 6.24766 6.39069 6.42686 6.60644 6.82536 6.93715 7.35570 7.55192 7.75198 7.86894 8.14035 8.45063 8.73951 8.89875 9.49624 10.10209 10.98851 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.005192 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.383713 B = 5391.529929 C = 6623.747023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.058 3.942 3 C -0.075 4.075 4 C -0.124 4.124 5 C 0.555 3.445 6 O -0.540 6.540 7 N -0.681 5.681 8 C 0.135 3.865 9 C 0.124 3.876 10 H 0.043 0.957 11 C 0.056 3.944 12 O -0.391 6.391 13 C 0.035 3.965 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.259 4.259 17 H 0.071 0.929 18 C 0.015 3.985 19 N -0.894 5.894 20 Si 0.886 3.114 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.112 3.888 25 C -0.101 4.101 26 N -0.249 5.249 27 N -0.231 5.231 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.414 0.586 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.257 0.743 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -2.791 -5.080 6.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.087 4.087 3 C -0.104 4.104 4 C -0.138 4.138 5 C 0.340 3.660 6 O -0.420 6.420 7 N -0.332 5.332 8 C 0.011 3.989 9 C 0.017 3.983 10 H 0.060 0.940 11 C -0.023 4.023 12 O -0.310 6.310 13 C -0.043 4.043 14 C 0.019 3.981 15 N -0.317 5.317 16 C -0.388 4.388 17 H 0.089 0.911 18 C -0.186 4.186 19 N -0.537 5.537 20 Si 0.715 3.285 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.033 4.033 25 C -0.159 4.159 26 N -0.091 5.091 27 N -0.075 5.075 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.416 -4.344 -5.085 7.510 hybrid contribution -0.764 0.875 1.225 1.688 sum 2.652 -3.470 -3.859 5.828 Atomic orbital electron populations 1.20694 0.87061 1.04113 1.03953 1.22833 0.99298 0.89924 0.96604 1.22755 0.93574 1.00950 0.93151 1.21172 0.94352 0.95865 1.02432 1.17798 0.87137 0.83056 0.78042 1.90691 1.13485 1.86751 1.51043 1.45912 1.12105 1.04535 1.70684 1.21260 0.93182 0.82772 1.01646 1.21452 0.92061 0.92276 0.92515 0.93986 1.22852 0.91788 0.86731 1.00905 1.87812 1.57279 1.44835 1.41070 1.23350 0.94504 1.00276 0.86197 1.21399 0.91305 0.83054 1.02319 1.44073 1.46905 1.15587 1.25101 1.19227 0.93742 1.07911 1.17954 0.91097 1.25142 0.95248 0.98457 0.99730 1.69977 0.97941 1.44610 1.41193 0.86475 0.77997 0.81102 0.82970 1.20152 1.21114 1.21190 1.23074 0.99562 0.88622 0.92015 1.20919 0.86616 1.03793 1.04551 1.72988 0.98993 1.26411 1.10737 1.72737 1.01837 1.25024 1.07853 0.89736 0.89793 0.89975 0.82077 0.74676 0.90956 0.91781 0.93431 0.89820 0.94068 0.90164 0.89241 0.95099 0.93304 0.89688 0.91038 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.19 36.01 0.37 -0.80 16 2 C 0.06 0.87 6.86 -82.46 -0.57 0.31 16 3 C -0.07 -1.16 9.35 -38.78 -0.36 -1.53 16 4 C -0.12 -2.06 5.92 -104.57 -0.62 -2.68 16 5 C 0.55 9.66 7.74 -12.20 -0.09 9.57 16 6 O -0.54 -10.06 13.52 5.35 0.07 -9.99 16 7 N -0.68 -11.69 3.81 -61.16 -0.23 -11.92 16 8 C 0.14 2.26 4.44 -4.04 -0.02 2.24 16 9 C 0.12 2.21 3.19 -67.42 -0.22 2.00 16 10 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 11 C 0.06 0.92 6.29 37.31 0.23 1.15 16 12 O -0.39 -7.13 10.74 -35.23 -0.38 -7.51 16 13 C 0.03 0.62 6.99 37.31 0.26 0.88 16 14 C 0.14 3.06 5.37 -3.53 -0.02 3.04 16 15 N -0.59 -12.54 3.02 -164.29 -0.50 -13.03 16 16 C -0.26 -5.95 7.06 -15.06 -0.11 -6.05 16 17 H 0.07 1.69 5.90 -52.49 -0.31 1.38 16 18 C 0.01 0.35 5.05 -17.43 -0.09 0.26 16 19 N -0.89 -22.32 11.25 55.49 0.62 -21.69 16 20 Si 0.89 19.77 29.57 -169.99 -5.03 14.74 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.11 1.83 6.91 -81.99 -0.57 1.26 16 25 C -0.10 -1.41 8.96 36.01 0.32 -1.09 16 26 N -0.25 -4.28 11.42 33.81 0.39 -3.89 16 27 N -0.23 -3.89 11.40 33.58 0.38 -3.50 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.16 2.40 6.64 -52.49 -0.35 2.06 16 32 H 0.41 7.31 5.64 -40.82 -0.23 7.08 16 33 H 0.07 1.32 7.49 -51.93 -0.39 0.93 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.09 2.10 6.45 -51.93 -0.34 1.76 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.51 5.95 -51.93 -0.31 1.21 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -27.57 354.41 -6.92 -34.50 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.13 Total: 8.39 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.47 Total: 8.57 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.66 Total: -54.04 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.31 Total: -17.50 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.57 -6.92 -34.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050938690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.275 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds