Wall clock time and date at job start Tue Mar 31 2020 12:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38546 * 120.01306 * 2 1 4 4 C 1.40076 * 117.81784 * 180.25628 * 3 2 1 5 5 C 1.48136 * 121.14773 * 179.78678 * 4 3 2 6 6 O 1.21518 * 120.00018 * 174.58341 * 5 4 3 7 7 N 1.34773 * 119.99962 * 354.85836 * 5 4 3 8 8 C 1.46499 * 120.00036 * 179.71994 * 7 5 4 9 9 C 1.52998 * 109.46932 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.67972 * 301.26274 * 9 8 7 11 11 C 1.53296 * 109.67956 * 180.74767 * 9 8 7 12 12 O 1.42960 * 109.22497 * 187.97469 * 11 9 8 13 13 C 1.42963 * 114.16663 * 62.58276 * 12 11 9 14 14 C 1.53301 * 109.21991 * 297.42237 * 13 12 11 15 15 N 1.47155 * 108.41676 * 52.27982 * 14 13 12 16 16 C 1.36938 * 120.99655 * 129.50809 * 15 14 13 17 17 H 1.07999 * 120.00297 * 212.68017 * 16 15 14 18 18 C 1.38816 * 119.99219 * 32.67591 * 16 15 14 19 19 N 1.31616 * 120.00483 * 10.74212 * 18 16 15 20 20 Si 1.86805 * 119.99518 * 190.74091 * 18 16 15 21 21 H 1.48500 * 109.47208 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47124 * 120.00401 * 20 18 16 23 23 H 1.48502 * 109.47153 * 240.00184 * 20 18 16 24 24 C 1.39766 * 117.70348 * 359.52089 * 4 3 2 25 25 C 1.50704 * 120.17172 * 180.22515 * 24 4 3 26 26 N 1.31899 * 119.65945 * 0.24484 * 24 4 3 27 27 N 1.28277 * 122.32663 * 0.02562 * 26 24 4 28 28 H 1.08995 * 109.47520 * 270.22981 * 1 2 3 29 29 H 1.09000 * 109.47664 * 30.23725 * 1 2 3 30 30 H 1.09003 * 109.46846 * 150.23378 * 1 2 3 31 31 H 1.07995 * 121.09284 * 0.05686 * 3 2 1 32 32 H 0.97006 * 120.00182 * 359.72812 * 7 5 4 33 33 H 1.08996 * 109.47133 * 300.00167 * 8 7 5 34 34 H 1.08997 * 109.46590 * 60.00502 * 8 7 5 35 35 H 1.09002 * 109.51645 * 307.89792 * 11 9 8 36 36 H 1.09004 * 109.51676 * 68.00135 * 11 9 8 37 37 H 1.08993 * 109.51419 * 57.33885 * 13 12 11 38 38 H 1.09001 * 109.51582 * 177.49811 * 13 12 11 39 39 H 1.09002 * 109.67834 * 172.02846 * 14 13 12 40 40 H 1.09000 * 109.67948 * 292.57501 * 14 13 12 41 41 H 0.96991 * 119.99983 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47303 * 83.14761 * 25 24 4 43 43 H 1.08993 * 109.47108 * 203.14990 * 25 24 4 44 44 H 1.08998 * 109.47186 * 323.15245 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0055 5 6 4.4139 2.3836 -0.0106 6 8 5.6235 2.3154 0.0839 7 7 3.8127 3.5853 -0.1146 8 6 4.6175 4.8095 -0.1135 9 6 3.6971 6.0249 -0.2416 10 1 3.1183 5.9517 -1.1623 11 6 4.5358 7.3080 -0.2597 12 8 3.6656 8.4402 -0.1919 13 6 2.8940 8.5142 1.0094 14 6 1.9712 7.2928 1.0925 15 7 2.7866 6.0810 0.9131 16 6 2.7011 5.0366 1.7947 17 1 3.5728 4.4349 2.0052 18 6 1.4938 4.7516 2.4177 19 7 0.3885 5.3393 2.0114 20 14 1.4380 3.5336 3.8330 21 1 2.8051 3.0164 4.0952 22 1 0.9242 4.2120 5.0499 23 1 0.5405 2.4046 3.4795 24 6 4.2016 -0.1154 -0.0003 25 6 5.7037 -0.2378 -0.0008 26 7 3.4483 -1.1980 0.0045 27 7 2.1667 -1.1420 0.0042 28 1 -0.3634 0.0041 1.0276 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6782 2.1452 0.0009 32 1 2.8472 3.6397 -0.1901 33 1 5.1777 4.8751 0.8192 34 1 5.3115 4.7887 -0.9537 35 1 5.2094 7.3148 0.5972 36 1 5.1176 7.3497 -1.1805 37 1 3.5616 8.5252 1.8708 38 1 2.2938 9.4241 1.0012 39 1 1.4839 7.2666 2.0672 40 1 1.2181 7.3476 0.3064 41 1 -0.4551 5.1398 2.4465 42 1 6.0765 -0.1407 1.0189 43 1 5.9887 -1.2109 -0.4006 44 1 6.1323 0.5495 -0.6208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050938690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:02 Heat of formation + Delta-G solvation = -13.755343 kcal Electronic energy + Delta-G solvation = -28263.949870 eV Core-core repulsion = 24410.155941 eV Total energy + Delta-G solvation = -3853.793929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48096 -40.75736 -39.85513 -37.07151 -35.74269 -35.21331 -34.73871 -33.27235 -32.19823 -30.79800 -28.99845 -27.89018 -27.38782 -25.74061 -25.23357 -23.96747 -23.15486 -21.70587 -21.32044 -19.15852 -18.80637 -18.11808 -17.60944 -17.17953 -16.78906 -16.77387 -16.39081 -16.26090 -16.06501 -15.67514 -15.39547 -15.32000 -14.90371 -14.57288 -14.43272 -14.31401 -14.26351 -13.61459 -13.48070 -13.34650 -13.13043 -13.04025 -12.94921 -12.77351 -12.52046 -12.17794 -12.13400 -12.00277 -11.87776 -11.49678 -11.37498 -11.27783 -10.75764 -10.62669 -10.57782 -10.48714 -9.96044 -8.61371 -7.89672 -5.41292 -0.83126 -0.29967 1.32947 1.43306 1.46665 1.63680 2.01237 2.39804 2.42830 2.82466 3.04207 3.15784 3.25091 3.28168 3.43058 3.54086 3.67448 4.01896 4.03151 4.22271 4.23269 4.33691 4.44966 4.48947 4.59844 4.64750 4.65231 4.67398 4.69660 4.72942 4.76193 4.78484 5.01511 5.04547 5.11548 5.16332 5.26198 5.30816 5.46206 5.63285 5.68072 6.30760 6.36471 6.47698 7.05809 7.09794 7.48608 7.74334 8.32096 9.14195 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.005192 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.383713 B = 5391.529929 C = 6623.747023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.058 3.942 3 C -0.074 4.074 4 C -0.136 4.136 5 C 0.557 3.443 6 O -0.553 6.553 7 N -0.682 5.682 8 C 0.141 3.859 9 C 0.125 3.875 10 H 0.041 0.959 11 C 0.057 3.943 12 O -0.398 6.398 13 C 0.045 3.955 14 C 0.150 3.850 15 N -0.603 5.603 16 C -0.243 4.243 17 H 0.065 0.935 18 C -0.017 4.017 19 N -0.916 5.916 20 Si 0.924 3.076 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.282 1.282 24 C 0.106 3.894 25 C -0.095 4.095 26 N -0.264 5.264 27 N -0.247 5.247 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.166 0.834 32 H 0.412 0.588 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.119 0.881 37 H 0.043 0.957 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.010 0.990 41 H 0.252 0.748 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 -2.578 -5.875 7.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.087 4.087 3 C -0.104 4.104 4 C -0.150 4.150 5 C 0.342 3.658 6 O -0.434 6.434 7 N -0.332 5.332 8 C 0.017 3.983 9 C 0.019 3.981 10 H 0.059 0.941 11 C -0.022 4.022 12 O -0.316 6.316 13 C -0.032 4.032 14 C 0.024 3.976 15 N -0.329 5.329 16 C -0.373 4.373 17 H 0.082 0.918 18 C -0.215 4.215 19 N -0.561 5.561 20 Si 0.754 3.246 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.208 1.208 24 C -0.039 4.039 25 C -0.153 4.153 26 N -0.106 5.106 27 N -0.090 5.090 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.184 0.816 32 H 0.250 0.750 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.137 0.863 37 H 0.061 0.939 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.047 -4.135 -5.892 8.258 hybrid contribution -0.925 0.817 1.444 1.900 sum 3.121 -3.318 -4.448 6.366 Atomic orbital electron populations 1.20826 0.84667 1.05684 1.04558 1.23299 1.00815 0.89167 0.95378 1.22886 0.93342 1.01447 0.92685 1.21198 0.94805 0.95696 1.03312 1.17879 0.87019 0.83269 0.77616 1.90682 1.14015 1.86975 1.51704 1.45912 1.11971 1.04738 1.70613 1.21251 0.93009 0.82107 1.01932 1.21580 0.91731 0.93857 0.90935 0.94134 1.22994 0.91285 0.85034 1.02845 1.87815 1.57402 1.45477 1.40917 1.23213 0.94088 0.99495 0.86437 1.21221 0.91645 0.84673 1.00024 1.44244 1.47275 1.15288 1.26106 1.19211 0.93061 1.07487 1.17512 0.91760 1.25439 0.95344 0.99626 1.01072 1.70056 0.98038 1.45901 1.42117 0.85893 0.77157 0.80156 0.81406 1.21176 1.22148 1.20797 1.23368 1.00513 0.88338 0.91730 1.20912 0.85173 1.04672 1.04546 1.72948 0.99379 1.26868 1.11383 1.72697 1.01895 1.25889 1.08495 0.89410 0.88298 0.88406 0.81617 0.74996 0.92454 0.89202 0.93217 0.86349 0.93895 0.87921 0.91906 0.97166 0.93796 0.89638 0.89211 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 10.19 71.24 0.73 -1.42 16 2 C 0.06 1.69 6.86 42.62 0.29 1.99 16 3 C -0.07 -2.24 9.35 22.79 0.21 -2.02 16 4 C -0.14 -4.42 5.92 -19.83 -0.12 -4.54 16 5 C 0.56 18.90 7.74 86.87 0.67 19.57 16 6 O -0.55 -20.04 13.52 -3.77 -0.05 -20.09 16 7 N -0.68 -22.68 3.81 -465.71 -1.78 -24.46 16 8 C 0.14 4.45 4.44 86.38 0.38 4.83 16 9 C 0.13 4.24 3.19 44.96 0.14 4.38 16 10 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 11 C 0.06 1.69 6.29 72.08 0.45 2.14 16 12 O -0.40 -13.46 10.74 -148.98 -1.60 -15.06 16 13 C 0.05 1.56 6.99 72.08 0.50 2.07 16 14 C 0.15 6.30 5.37 86.36 0.46 6.76 16 15 N -0.60 -25.14 3.02 -673.70 -2.04 -27.18 16 16 C -0.24 -11.04 7.06 84.03 0.59 -10.44 16 17 H 0.06 3.02 5.90 -2.91 -0.02 3.01 16 18 C -0.02 -0.81 5.05 84.86 0.43 -0.38 16 19 N -0.92 -46.01 11.25 21.65 0.24 -45.76 16 20 Si 0.92 40.62 29.57 68.60 2.03 42.65 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 24 C 0.11 3.38 6.91 42.92 0.30 3.67 16 25 C -0.10 -2.57 8.96 71.24 0.64 -1.93 16 26 N -0.26 -8.87 11.42 -46.93 -0.54 -9.41 16 27 N -0.25 -8.08 11.40 -47.69 -0.54 -8.62 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 1.84 8.09 -2.39 -0.02 1.82 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.17 4.82 6.64 -2.91 -0.02 4.80 16 32 H 0.41 14.22 5.64 -92.70 -0.52 13.70 16 33 H 0.06 2.01 7.49 -2.39 -0.02 1.99 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.06 2.97 6.45 -2.39 -0.02 2.96 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.25 12.51 8.31 -92.72 -0.77 11.74 16 42 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 43 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.10 2.80 5.95 -2.39 -0.01 2.79 16 Total: -1.00 -57.77 354.41 1.93 -55.85 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.51 Total: 27.41 kcal Atomic # 6 Polarization: 18.99 SS G_CDS: 5.69 Total: 24.68 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -4.65 Total: -115.43 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -1.65 Total: -35.15 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -57.77 1.93 -55.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050938690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.090 kcal (2) G-P(sol) polarization free energy of solvation -57.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds