Wall clock time and date at job start Tue Mar 31 2020 12:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00151 * 2 1 4 4 H 1.48506 * 109.47308 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47258 * 120.00631 * 3 2 1 6 6 H 1.48502 * 109.47307 * 240.00639 * 3 2 1 7 7 C 1.38810 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 191.85583 * 7 2 1 9 9 N 1.36935 * 120.00019 * 11.85653 * 7 2 1 10 10 C 1.47152 * 120.98208 * 30.71168 * 9 7 2 11 11 C 1.53714 * 108.16394 * 129.43260 * 10 9 7 12 12 O 1.42956 * 109.14541 * 52.53556 * 11 10 9 13 13 C 1.42961 * 114.16998 * 297.28537 * 12 11 10 14 14 C 1.47153 * 120.98370 * 210.99133 * 9 7 2 15 15 H 1.08996 * 109.68187 * 110.78915 * 14 9 7 16 16 C 1.53001 * 109.68106 * 350.26990 * 14 9 7 17 17 N 1.46503 * 109.46606 * 60.43226 * 16 14 9 18 18 C 1.34782 * 119.99675 * 179.97438 * 17 16 14 19 19 O 1.21567 * 120.00239 * 0.02562 * 18 17 16 20 20 C 1.47712 * 119.99869 * 180.02562 * 18 17 16 21 21 C 1.41504 * 126.51679 * 180.02562 * 20 18 17 22 22 C 1.35367 * 105.50265 * 179.97438 * 21 20 18 23 23 C 1.50698 * 126.38484 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.49782 * 213.62029 * 23 22 21 25 25 C 1.52994 * 60.00173 * 252.51420 * 24 23 22 26 26 N 1.35040 * 107.22906 * 359.97438 * 22 21 20 27 27 H 0.96996 * 124.88841 * 180.02562 * 26 22 21 28 28 N 1.28469 * 110.22663 * 359.74613 * 26 22 21 29 29 H 0.97010 * 119.99802 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.67966 * 249.21211 * 10 9 7 31 31 H 1.08997 * 109.68345 * 9.76167 * 10 9 7 32 32 H 1.09000 * 109.65306 * 292.56652 * 11 10 9 33 33 H 1.09003 * 109.44048 * 172.37407 * 11 10 9 34 34 H 1.09000 * 109.51518 * 302.66259 * 13 12 11 35 35 H 1.08994 * 109.51459 * 182.50597 * 13 12 11 36 36 H 1.08993 * 109.47057 * 180.42885 * 16 14 9 37 37 H 1.08999 * 109.47357 * 300.43854 * 16 14 9 38 38 H 0.97000 * 120.00685 * 0.02562 * 17 16 14 39 39 H 1.07995 * 127.24726 * 359.95177 * 21 20 18 40 40 H 1.08995 * 115.55088 * 359.33105 * 23 22 21 41 41 H 1.09006 * 117.49777 * 0.02562 * 24 23 22 42 42 H 1.08998 * 117.49957 * 145.02199 * 24 23 22 43 43 H 1.09003 * 117.50003 * 252.51206 * 25 24 23 44 44 H 1.08999 * 117.50009 * 107.48743 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0729 -1.2123 0.1916 9 7 1.3474 -2.3753 -0.2447 10 6 0.1661 -2.4096 -1.1215 11 6 0.3711 -3.5259 -2.1582 12 8 0.6931 -4.7423 -1.4798 13 6 1.9143 -4.6934 -0.7382 14 6 1.7917 -3.6378 0.3668 15 1 1.0613 -3.9643 1.1069 16 6 3.1510 -3.4344 1.0391 17 7 3.0311 -2.4143 2.0837 18 6 4.1095 -2.0682 2.8144 19 8 5.1816 -2.6021 2.6063 20 6 3.9886 -1.0400 3.8681 21 6 5.0242 -0.5733 4.7120 22 6 4.4494 0.3576 5.5091 23 6 5.1340 1.1558 6.5886 24 6 4.3120 1.5207 7.8263 25 6 4.6711 2.5985 6.8015 26 7 3.1483 0.4376 5.1568 27 1 2.4978 1.0290 5.5667 28 7 2.8972 -0.3780 4.1965 29 1 -0.4850 0.8401 0.0004 30 1 -0.7253 -2.6145 -0.5286 31 1 0.0577 -1.4511 -1.6290 32 1 1.1860 -3.2570 -2.8302 33 1 -0.5458 -3.6607 -2.7321 34 1 2.7349 -4.4288 -1.4051 35 1 2.1078 -5.6681 -0.2906 36 1 3.4803 -4.3733 1.4842 37 1 3.8790 -3.1095 0.2958 38 1 2.1756 -1.9885 2.2501 39 1 6.0558 -0.8928 4.7188 40 1 6.1927 0.9405 6.7327 41 1 3.2761 1.1830 7.8600 42 1 4.8298 1.5453 8.7851 43 1 5.4253 3.3322 7.0861 44 1 3.8715 2.9702 6.1608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051130872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:36 Heat of formation + Delta-G solvation = 51.196923 kcal Electronic energy + Delta-G solvation = -27619.946850 eV Core-core repulsion = 23768.969462 eV Total energy + Delta-G solvation = -3850.977388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.55340 -39.08166 -38.14945 -37.38190 -35.26114 -33.51050 -31.88545 -31.33266 -30.54466 -30.13187 -27.17775 -25.79885 -23.80877 -23.39903 -22.86364 -22.76395 -21.44542 -20.97940 -19.70550 -19.20688 -17.70368 -16.96500 -16.19613 -15.91577 -15.78082 -15.58464 -15.39901 -14.75905 -14.55737 -14.26579 -14.18818 -13.80798 -13.56267 -13.44960 -13.25651 -12.85426 -12.58577 -12.30206 -11.98427 -11.83104 -11.51713 -11.30602 -11.00738 -10.89500 -10.82312 -10.72744 -10.55371 -10.38349 -10.23318 -9.99382 -9.68060 -9.58283 -9.18570 -8.94751 -8.70488 -8.60650 -8.18928 -6.67878 -5.85537 -3.33714 1.85139 2.18473 2.94213 3.34230 3.37231 3.42157 3.60710 3.75338 3.96197 4.23535 4.40444 4.43665 4.57148 4.60104 4.73125 4.92849 5.19298 5.23481 5.33362 5.43348 5.52279 5.64597 5.67247 5.68687 5.74722 5.79878 5.91581 6.00669 6.06430 6.13986 6.19218 6.26596 6.35791 6.53455 6.57080 6.80262 7.06734 7.10916 7.16056 7.52188 7.76270 7.90046 7.98807 8.33193 8.37881 8.86605 9.11250 9.71763 10.30322 11.21323 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.004046 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.586949 B = 6919.213642 C = 8058.447137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.015 3.985 3 Si 0.896 3.104 4 H -0.291 1.291 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.073 0.927 9 N -0.591 5.591 10 C 0.145 3.855 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.041 0.959 16 C 0.135 3.865 17 N -0.679 5.679 18 C 0.595 3.405 19 O -0.557 6.557 20 C -0.001 4.001 21 C -0.172 4.172 22 C 0.035 3.965 23 C -0.082 4.082 24 C -0.175 4.175 25 C -0.176 4.176 26 N -0.384 5.384 27 H 0.440 0.560 28 N -0.238 5.238 29 H 0.254 0.746 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.422 0.578 39 H 0.161 0.839 40 H 0.132 0.868 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.767 1.068 11.321 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.185 4.185 3 Si 0.726 3.274 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.090 0.910 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.022 4.022 14 C 0.017 3.983 15 H 0.059 0.941 16 C 0.010 3.990 17 N -0.330 5.330 18 C 0.378 3.622 19 O -0.435 6.435 20 C -0.163 4.163 21 C -0.200 4.200 22 C -0.090 4.090 23 C -0.101 4.101 24 C -0.213 4.213 25 C -0.213 4.213 26 N -0.098 5.098 27 H 0.284 0.716 28 N -0.073 5.073 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.262 0.738 39 H 0.178 0.822 40 H 0.150 0.850 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.156 0.730 10.827 12.015 hybrid contribution 0.573 1.828 0.456 1.969 sum 5.729 2.558 11.283 12.910 Atomic orbital electron populations 1.69978 1.05141 1.25613 1.53572 1.25060 0.95195 0.98078 1.00164 0.86460 0.78977 0.83627 0.78339 1.21724 1.20737 1.21041 1.19157 0.91519 0.83394 1.44248 0.90972 1.44105 1.32907 1.02599 1.52064 1.21489 0.88961 0.96928 0.90678 1.23428 0.99129 0.86377 0.95399 1.87793 1.41225 1.35609 1.66493 1.22862 0.86884 0.98721 0.93779 1.21437 0.93793 0.89359 0.93698 0.94102 1.21216 0.97749 0.90239 0.89752 1.45919 1.12943 1.40174 1.33987 1.16849 0.84319 0.80808 0.80189 1.90722 1.27691 1.55316 1.69766 1.22039 0.90920 1.01718 1.01597 1.21390 1.00781 0.99907 0.97951 1.20397 0.85618 1.01979 1.01033 1.20479 0.99418 0.95932 0.94307 1.23082 1.00958 1.03040 0.94172 1.23100 1.04052 0.91572 1.02612 1.43254 1.08811 1.31342 1.26346 0.71614 1.73780 1.25877 1.04135 1.03514 0.93545 0.95262 0.89022 0.94068 0.90313 0.93445 0.89878 0.92056 0.91271 0.73847 0.82171 0.85041 0.88798 0.87695 0.87664 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 11.17 55.49 0.62 -24.17 16 2 C 0.01 0.39 5.03 -17.43 -0.09 0.30 16 3 Si 0.90 21.76 29.57 -169.99 -5.03 16.73 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.50 7.05 -15.06 -0.11 -6.61 16 8 H 0.07 1.90 5.80 -52.49 -0.30 1.60 16 9 N -0.59 -13.99 3.03 -164.04 -0.50 -14.48 16 10 C 0.14 3.35 5.41 -3.31 -0.02 3.34 16 11 C 0.03 0.68 7.00 37.53 0.26 0.94 16 12 O -0.39 -7.75 10.74 -35.23 -0.38 -8.13 16 13 C 0.06 1.02 6.29 37.31 0.23 1.25 16 14 C 0.12 2.51 3.21 -67.42 -0.22 2.29 16 15 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 16 C 0.13 2.60 4.45 -4.04 -0.02 2.58 16 17 N -0.68 -14.01 3.76 -61.29 -0.23 -14.24 16 18 C 0.59 12.33 7.82 -12.39 -0.10 12.24 16 19 O -0.56 -12.39 16.93 5.31 0.09 -12.30 16 20 C 0.00 -0.02 7.13 -82.76 -0.59 -0.61 16 21 C -0.17 -2.71 10.73 -39.36 -0.42 -3.13 16 22 C 0.03 0.45 6.64 -82.21 -0.55 -0.10 16 23 C -0.08 -0.73 6.26 -91.77 -0.57 -1.30 16 24 C -0.18 -1.22 10.22 -26.73 -0.27 -1.49 16 25 C -0.18 -1.31 10.23 -26.73 -0.27 -1.59 16 26 N -0.38 -5.32 6.80 33.50 0.23 -5.09 16 27 H 0.44 4.62 8.96 -190.44 -1.71 2.91 16 28 N -0.24 -4.31 11.92 33.42 0.40 -3.92 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.32 6.33 -51.93 -0.33 2.00 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.42 7.58 -51.93 -0.39 1.03 16 38 H 0.42 9.36 7.03 -40.82 -0.29 9.07 16 39 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -31.65 362.47 -9.71 -41.36 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.65 Total: 10.66 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -2.73 Total: 8.11 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 0.52 Total: -61.90 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.29 Total: -20.42 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.65 -9.71 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051130872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.555 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds