Wall clock time and date at job start Tue Mar 31 2020 12:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00151 * 2 1 4 4 H 1.48506 * 109.47308 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47258 * 120.00631 * 3 2 1 6 6 H 1.48502 * 109.47307 * 240.00639 * 3 2 1 7 7 C 1.38810 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 191.85583 * 7 2 1 9 9 N 1.36935 * 120.00019 * 11.85653 * 7 2 1 10 10 C 1.47152 * 120.98208 * 30.71168 * 9 7 2 11 11 C 1.53714 * 108.16394 * 129.43260 * 10 9 7 12 12 O 1.42956 * 109.14541 * 52.53556 * 11 10 9 13 13 C 1.42961 * 114.16998 * 297.28537 * 12 11 10 14 14 C 1.47153 * 120.98370 * 210.99133 * 9 7 2 15 15 H 1.08996 * 109.68187 * 110.78915 * 14 9 7 16 16 C 1.53001 * 109.68106 * 350.26990 * 14 9 7 17 17 N 1.46503 * 109.46606 * 60.43226 * 16 14 9 18 18 C 1.34782 * 119.99675 * 179.97438 * 17 16 14 19 19 O 1.21567 * 120.00239 * 0.02562 * 18 17 16 20 20 C 1.47712 * 119.99869 * 180.02562 * 18 17 16 21 21 C 1.41504 * 126.51679 * 180.02562 * 20 18 17 22 22 C 1.35367 * 105.50265 * 179.97438 * 21 20 18 23 23 C 1.50698 * 126.38484 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.49782 * 213.62029 * 23 22 21 25 25 C 1.52994 * 60.00173 * 252.51420 * 24 23 22 26 26 N 1.35040 * 107.22906 * 359.97438 * 22 21 20 27 27 H 0.96996 * 124.88841 * 180.02562 * 26 22 21 28 28 N 1.28469 * 110.22663 * 359.74613 * 26 22 21 29 29 H 0.97010 * 119.99802 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.67966 * 249.21211 * 10 9 7 31 31 H 1.08997 * 109.68345 * 9.76167 * 10 9 7 32 32 H 1.09000 * 109.65306 * 292.56652 * 11 10 9 33 33 H 1.09003 * 109.44048 * 172.37407 * 11 10 9 34 34 H 1.09000 * 109.51518 * 302.66259 * 13 12 11 35 35 H 1.08994 * 109.51459 * 182.50597 * 13 12 11 36 36 H 1.08993 * 109.47057 * 180.42885 * 16 14 9 37 37 H 1.08999 * 109.47357 * 300.43854 * 16 14 9 38 38 H 0.97000 * 120.00685 * 0.02562 * 17 16 14 39 39 H 1.07995 * 127.24726 * 359.95177 * 21 20 18 40 40 H 1.08995 * 115.55088 * 359.33105 * 23 22 21 41 41 H 1.09006 * 117.49777 * 0.02562 * 24 23 22 42 42 H 1.08998 * 117.49957 * 145.02199 * 24 23 22 43 43 H 1.09003 * 117.50003 * 252.51206 * 25 24 23 44 44 H 1.08999 * 117.50009 * 107.48743 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0729 -1.2123 0.1916 9 7 1.3474 -2.3753 -0.2447 10 6 0.1661 -2.4096 -1.1215 11 6 0.3711 -3.5259 -2.1582 12 8 0.6931 -4.7423 -1.4798 13 6 1.9143 -4.6934 -0.7382 14 6 1.7917 -3.6378 0.3668 15 1 1.0613 -3.9643 1.1069 16 6 3.1510 -3.4344 1.0391 17 7 3.0311 -2.4143 2.0837 18 6 4.1095 -2.0682 2.8144 19 8 5.1816 -2.6021 2.6063 20 6 3.9886 -1.0400 3.8681 21 6 5.0242 -0.5733 4.7120 22 6 4.4494 0.3576 5.5091 23 6 5.1340 1.1558 6.5886 24 6 4.3120 1.5207 7.8263 25 6 4.6711 2.5985 6.8015 26 7 3.1483 0.4376 5.1568 27 1 2.4978 1.0290 5.5667 28 7 2.8972 -0.3780 4.1965 29 1 -0.4850 0.8401 0.0004 30 1 -0.7253 -2.6145 -0.5286 31 1 0.0577 -1.4511 -1.6290 32 1 1.1860 -3.2570 -2.8302 33 1 -0.5458 -3.6607 -2.7321 34 1 2.7349 -4.4288 -1.4051 35 1 2.1078 -5.6681 -0.2906 36 1 3.4803 -4.3733 1.4842 37 1 3.8790 -3.1095 0.2958 38 1 2.1756 -1.9885 2.2501 39 1 6.0558 -0.8928 4.7188 40 1 6.1927 0.9405 6.7327 41 1 3.2761 1.1830 7.8600 42 1 4.8298 1.5453 8.7851 43 1 5.4253 3.3322 7.0861 44 1 3.8715 2.9702 6.1608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051130872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:35 Heat of formation + Delta-G solvation = 29.306709 kcal Electronic energy + Delta-G solvation = -27620.896081 eV Core-core repulsion = 23768.969462 eV Total energy + Delta-G solvation = -3851.926619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.76094 -40.71136 -39.75882 -38.08944 -36.94728 -35.31238 -33.45795 -32.81151 -32.13531 -31.43946 -29.00438 -27.37104 -25.26423 -24.97534 -24.08407 -23.30128 -23.03846 -22.10267 -21.42946 -20.74876 -18.77580 -18.65076 -17.68445 -17.57324 -17.26238 -16.76096 -16.57357 -16.27725 -16.24211 -16.01408 -15.46507 -15.22363 -15.14450 -15.01206 -14.67083 -14.42559 -14.19946 -13.55930 -13.17249 -13.11394 -12.93222 -12.74174 -12.52172 -12.49133 -12.19854 -12.06276 -12.01395 -11.90808 -11.85005 -11.44929 -11.33388 -11.19158 -10.66740 -10.56081 -10.48657 -9.86169 -9.77399 -8.62029 -7.88394 -5.37284 0.52941 1.00399 1.37023 1.38054 1.44016 1.83892 2.28455 2.42832 2.45341 2.98064 3.04599 3.27942 3.38424 3.45269 3.47882 3.75960 4.01758 4.02131 4.10827 4.18220 4.26969 4.37455 4.48606 4.58080 4.59520 4.64723 4.67004 4.72370 4.74172 4.79291 4.97548 5.01642 5.11470 5.12803 5.16674 5.29603 5.30555 5.51604 5.63185 5.68326 6.03654 6.30243 6.37129 6.56095 6.87822 7.11002 7.23476 7.76358 8.31808 9.16126 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.004046 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.586949 B = 6919.213642 C = 8058.447137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.027 4.027 3 Si 0.943 3.057 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.239 4.239 8 H 0.065 0.935 9 N -0.605 5.605 10 C 0.150 3.850 11 C 0.047 3.953 12 O -0.397 6.397 13 C 0.059 3.941 14 C 0.125 3.875 15 H 0.035 0.965 16 C 0.138 3.862 17 N -0.683 5.683 18 C 0.592 3.408 19 O -0.578 6.578 20 C -0.031 4.031 21 C -0.195 4.195 22 C 0.062 3.938 23 C -0.102 4.102 24 C -0.159 4.159 25 C -0.170 4.170 26 N -0.371 5.371 27 H 0.454 0.546 28 N -0.272 5.272 29 H 0.249 0.751 30 H 0.006 0.994 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.414 0.586 39 H 0.170 0.830 40 H 0.149 0.851 41 H 0.094 0.906 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.774 1.118 12.592 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.223 4.223 3 Si 0.773 3.227 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.369 4.369 8 H 0.082 0.918 9 N -0.331 5.331 10 C 0.024 3.976 11 C -0.031 4.031 12 O -0.315 6.315 13 C -0.019 4.019 14 C 0.018 3.982 15 H 0.052 0.948 16 C 0.015 3.985 17 N -0.333 5.333 18 C 0.377 3.623 19 O -0.458 6.458 20 C -0.191 4.191 21 C -0.223 4.223 22 C -0.064 4.064 23 C -0.121 4.121 24 C -0.196 4.196 25 C -0.208 4.208 26 N -0.087 5.087 27 H 0.300 0.700 28 N -0.108 5.108 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.138 0.862 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.251 0.749 39 H 0.188 0.812 40 H 0.167 0.833 41 H 0.112 0.888 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.162 0.761 12.091 13.592 hybrid contribution 0.280 1.822 0.166 1.850 sum 6.442 2.583 12.257 14.085 Atomic orbital electron populations 1.70088 1.05932 1.25501 1.55437 1.25499 0.95674 1.00015 1.01147 0.85729 0.77816 0.81513 0.77635 1.21764 1.21568 1.21141 1.19162 0.91158 0.84232 1.42356 0.91786 1.44318 1.32789 1.03305 1.52731 1.21331 0.88035 0.97180 0.91038 1.23284 1.00595 0.85012 0.94200 1.87800 1.41989 1.35182 1.66543 1.22978 0.86409 0.99624 0.92893 1.21580 0.93771 0.88439 0.94375 0.94778 1.21245 0.96885 0.91031 0.89371 1.45966 1.12556 1.40436 1.34318 1.17150 0.83845 0.80928 0.80384 1.90685 1.28199 1.56308 1.70632 1.21958 0.92421 1.02398 1.02362 1.21614 1.00990 1.01172 0.98481 1.20909 0.84739 1.00418 1.00357 1.20679 1.00286 0.96772 0.94384 1.23206 1.00781 1.01446 0.94212 1.23205 1.04162 0.91021 1.02397 1.43310 1.09755 1.30454 1.25203 0.69951 1.73686 1.26312 1.05508 1.05290 0.94140 0.97604 0.91606 0.93657 0.87710 0.92983 0.86221 0.89526 0.92572 0.74863 0.81215 0.83328 0.88755 0.85537 0.85798 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.23 11.17 21.65 0.24 -51.99 16 2 C -0.03 -1.44 5.03 84.86 0.43 -1.01 16 3 Si 0.94 45.62 29.57 68.60 2.03 47.65 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 7 C -0.24 -12.44 7.05 84.03 0.59 -11.84 16 8 H 0.06 3.43 5.80 -2.91 -0.02 3.42 16 9 N -0.61 -28.88 3.03 -672.91 -2.04 -30.91 16 10 C 0.15 7.00 5.41 86.50 0.47 7.47 16 11 C 0.05 1.77 7.00 72.22 0.51 2.27 16 12 O -0.40 -14.78 10.74 -148.98 -1.60 -16.38 16 13 C 0.06 2.01 6.29 72.08 0.45 2.46 16 14 C 0.12 4.95 3.21 44.97 0.14 5.10 16 15 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 16 C 0.14 5.31 4.45 86.38 0.38 5.69 16 17 N -0.68 -28.70 3.76 -466.10 -1.75 -30.46 16 18 C 0.59 25.05 7.82 86.75 0.68 25.73 16 19 O -0.58 -26.07 16.93 -3.93 -0.07 -26.13 16 20 C -0.03 -1.20 7.13 42.46 0.30 -0.90 16 21 C -0.19 -6.07 10.73 22.41 0.24 -5.83 16 22 C 0.06 1.52 6.64 41.40 0.28 1.80 16 23 C -0.10 -1.55 6.26 -11.54 -0.07 -1.62 16 24 C -0.16 -1.68 10.22 30.59 0.31 -1.36 16 25 C -0.17 -2.02 10.23 30.59 0.31 -1.71 16 26 N -0.37 -10.05 6.80 -47.93 -0.33 -10.38 16 27 H 0.45 9.05 8.96 -220.00 -1.97 7.08 16 28 N -0.27 -9.98 11.92 -48.17 -0.57 -10.56 16 29 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 30 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.07 3.41 6.33 -2.39 -0.02 3.40 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.06 2.30 7.58 -2.39 -0.02 2.29 16 38 H 0.41 18.90 7.03 -92.71 -0.65 18.25 16 39 H 0.17 4.76 8.06 -2.91 -0.02 4.74 16 40 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -69.52 362.47 -0.64 -70.16 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -1.58 Total: 32.75 kcal Atomic # 6 Polarization: 21.23 SS G_CDS: 5.03 Total: 26.25 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -4.45 Total: -134.29 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -1.67 Total: -42.52 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -69.52 -0.64 -70.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051130872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.465 kcal (2) G-P(sol) polarization free energy of solvation -69.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds