Wall clock time and date at job start Tue Mar 31 2020 12:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38808 * 120.42624 * 2 1 4 4 C 1.39490 * 118.26613 * 179.97438 * 3 2 1 5 5 C 1.48445 * 120.55258 * 180.02562 * 4 3 2 6 6 O 1.21482 * 120.00086 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00373 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00466 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47336 * 180.02562 * 8 7 5 10 10 H 1.09005 * 109.67767 * 300.03125 * 9 8 7 11 11 C 1.53295 * 109.68472 * 179.48284 * 9 8 7 12 12 O 1.42961 * 109.22501 * 187.97074 * 11 9 8 13 13 C 1.42959 * 114.16658 * 62.57852 * 12 11 9 14 14 C 1.53293 * 109.22509 * 297.42173 * 13 12 11 15 15 N 1.47146 * 108.38621 * 52.29871 * 14 13 12 16 16 C 1.36939 * 120.98365 * 129.74166 * 15 14 13 17 17 H 1.08002 * 120.00208 * 211.35215 * 16 15 14 18 18 C 1.38808 * 119.99934 * 31.35102 * 16 15 14 19 19 N 1.31621 * 119.99803 * 9.82331 * 18 16 15 20 20 Si 1.86804 * 120.00328 * 189.82304 * 18 16 15 21 21 H 1.48502 * 109.46730 * 89.99849 * 20 18 16 22 22 H 1.48499 * 109.47298 * 210.00019 * 20 18 16 23 23 H 1.48498 * 109.46713 * 330.00320 * 20 18 16 24 24 N 1.33108 * 118.89908 * 0.27299 * 4 3 2 25 25 C 1.31559 * 120.73329 * 359.44729 * 24 4 3 26 26 C 1.50699 * 119.03888 * 180.28241 * 25 24 4 27 27 N 1.31907 * 121.91829 * 0.57188 * 25 24 4 28 28 H 1.09000 * 109.47635 * 89.99859 * 1 2 3 29 29 H 1.09006 * 109.46825 * 209.99921 * 1 2 3 30 30 H 1.09007 * 109.47355 * 329.99277 * 1 2 3 31 31 H 1.08003 * 120.86465 * 0.02562 * 3 2 1 32 32 H 0.97005 * 119.99686 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.46988 * 59.99851 * 8 7 5 34 34 H 1.09000 * 109.46769 * 299.99920 * 8 7 5 35 35 H 1.09001 * 109.51050 * 307.89421 * 11 9 8 36 36 H 1.09003 * 109.51052 * 67.99183 * 11 9 8 37 37 H 1.09006 * 109.51225 * 57.34155 * 13 12 11 38 38 H 1.08998 * 109.51298 * 177.49113 * 13 12 11 39 39 H 1.09005 * 109.67953 * 292.57924 * 14 13 12 40 40 H 1.08999 * 109.68578 * 172.02736 * 14 13 12 41 41 H 0.97002 * 119.99453 * 179.97438 * 19 18 16 42 42 H 1.08990 * 109.47752 * 270.27650 * 26 25 24 43 43 H 1.09007 * 109.47081 * 30.28399 * 26 25 24 44 44 H 1.09001 * 109.46916 * 150.27586 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1443 0.0005 5 6 4.4061 2.3933 0.0011 6 8 3.8492 3.4730 0.0016 7 7 5.7524 2.3296 0.0022 8 6 6.5441 3.5623 0.0034 9 6 8.0334 3.2119 0.0038 10 1 8.2727 2.6272 0.8921 11 6 8.8666 4.4985 -0.0081 12 8 10.2443 4.1655 -0.1948 13 6 10.5278 3.5244 -1.4407 14 6 9.7797 2.1878 -1.5023 15 7 8.3605 2.4360 -1.2031 16 6 7.3730 1.9545 -2.0206 17 1 6.4474 2.5005 -2.1288 18 6 7.5616 0.7647 -2.7102 19 7 8.5987 0.0022 -2.4355 20 14 6.3436 0.2456 -4.0280 21 1 6.7753 0.7869 -5.3417 22 1 6.2903 -1.2368 -4.0966 23 1 4.9970 0.7745 -3.6931 24 7 4.2028 -0.0444 -0.0045 25 6 3.4954 -1.1536 0.0010 26 6 4.2130 -2.4788 0.0014 27 7 2.1764 -1.1396 0.0004 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8900 0.5140 31 1 1.6912 2.1442 0.0004 32 1 6.1971 1.4675 0.0022 33 1 6.3074 4.1453 0.8934 34 1 6.3088 4.1460 -0.8866 35 1 8.5335 5.1405 -0.8235 36 1 8.7429 5.0211 0.9405 37 1 10.2006 4.1628 -2.2615 38 1 11.5999 3.3457 -1.5226 39 1 10.1953 1.5002 -0.7657 40 1 9.8750 1.7593 -2.5000 41 1 8.7303 -0.8294 -2.9172 42 1 4.3864 -2.7985 -1.0260 43 1 5.1684 -2.3745 0.5157 44 1 3.6032 -3.2220 0.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051164987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:30 Heat of formation + Delta-G solvation = -3.839965 kcal Electronic energy + Delta-G solvation = -28011.631474 eV Core-core repulsion = 24158.267508 eV Total energy + Delta-G solvation = -3853.363966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15548 -39.21628 -38.27428 -35.41378 -34.60758 -33.59510 -33.32588 -31.50962 -30.42781 -29.24853 -28.11662 -27.28184 -26.14550 -23.91028 -23.44683 -22.16914 -21.67660 -20.16154 -19.65995 -18.06327 -17.21457 -16.42422 -15.95323 -15.72954 -15.42926 -15.33087 -14.94699 -14.63469 -14.51097 -14.35129 -13.84956 -13.79468 -13.46259 -13.40337 -13.06876 -12.94927 -12.68354 -12.53308 -12.27601 -12.22580 -11.89546 -11.58401 -11.05881 -10.91071 -10.84168 -10.77665 -10.45462 -10.40854 -10.25860 -10.07988 -10.05819 -9.67111 -9.33100 -9.19410 -8.97450 -8.69428 -8.34797 -6.72836 -5.90771 -3.40502 0.66736 0.98235 3.04175 3.27279 3.34539 3.36545 3.40671 3.88548 3.95328 4.04408 4.33685 4.50874 4.64334 4.93193 5.02473 5.13029 5.27400 5.29175 5.34987 5.45286 5.52867 5.55620 5.67132 5.69542 5.70401 5.81787 5.88484 5.99454 6.01470 6.05065 6.13284 6.18504 6.32546 6.43719 6.50825 6.71588 6.90240 7.02765 7.06891 7.49421 7.69299 7.85496 7.98854 8.19775 8.29177 8.62245 9.05794 9.65656 10.24499 11.15859 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.004780 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.003591 B = 5855.761320 C = 6944.745335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.172 3.828 3 C -0.185 4.185 4 C 0.149 3.851 5 C 0.559 3.441 6 O -0.550 6.550 7 N -0.664 5.664 8 C 0.132 3.868 9 C 0.124 3.876 10 H 0.043 0.957 11 C 0.057 3.943 12 O -0.392 6.392 13 C 0.035 3.965 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.256 4.256 17 H 0.070 0.930 18 C 0.019 3.981 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.282 1.282 24 N -0.484 5.484 25 C 0.321 3.679 26 C -0.085 4.085 27 N -0.514 5.514 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.157 0.843 32 H 0.428 0.572 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.093 0.907 41 H 0.255 0.745 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.664 0.062 5.492 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.024 3.976 3 C -0.208 4.208 4 C 0.001 3.999 5 C 0.342 3.658 6 O -0.429 6.429 7 N -0.315 5.315 8 C 0.008 3.992 9 C 0.017 3.983 10 H 0.060 0.940 11 C -0.022 4.022 12 O -0.311 6.311 13 C -0.043 4.043 14 C 0.019 3.981 15 N -0.317 5.317 16 C -0.385 4.385 17 H 0.088 0.912 18 C -0.181 4.181 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.208 1.208 24 N -0.201 5.201 25 C 0.054 3.946 26 C -0.143 4.143 27 N -0.230 5.230 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.174 0.826 32 H 0.268 0.732 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.312 -0.150 5.545 9.993 hybrid contribution -0.982 -0.065 -1.155 1.517 sum -9.294 -0.214 4.390 10.281 Atomic orbital electron populations 1.20765 0.87474 1.04037 1.03753 1.21754 0.97653 0.87798 0.90423 1.22723 0.94796 1.01059 1.02197 1.21770 0.91947 0.92750 0.93470 1.17741 0.82972 0.86656 0.78440 1.90726 1.71736 1.28139 1.52290 1.45967 1.04586 1.12092 1.68859 1.21297 0.90297 0.86317 1.01301 1.21437 0.91429 0.93380 0.92048 0.93992 1.22848 0.82813 0.96055 1.00506 1.87800 1.24768 1.79455 1.39030 1.23364 0.99519 0.96406 0.85044 1.21418 0.82874 0.91435 1.02336 1.44084 1.02152 1.62569 1.22872 1.19143 0.97383 1.01795 1.20206 0.91195 1.25067 0.97494 0.95437 1.00139 1.69962 1.29350 1.12777 1.41852 0.86405 0.81150 0.77765 0.82173 1.21377 1.21441 1.20790 1.68312 1.41326 0.98003 1.12486 1.23252 0.86258 0.94804 0.90316 1.20594 1.00159 0.89330 1.04252 1.68023 1.09927 1.30465 1.14603 0.89637 0.89883 0.89967 0.82555 0.73150 0.91827 0.91064 0.93468 0.89872 0.94120 0.90224 0.95228 0.88899 0.93435 0.89460 0.89030 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.22 36.01 0.37 -0.56 16 2 C 0.17 2.36 6.83 -82.24 -0.56 1.80 16 3 C -0.18 -2.83 9.41 -38.90 -0.37 -3.20 16 4 C 0.15 2.72 6.79 -82.64 -0.56 2.16 16 5 C 0.56 11.03 7.83 -12.05 -0.09 10.94 16 6 O -0.55 -11.45 16.43 5.38 0.09 -11.37 16 7 N -0.66 -13.21 3.76 -61.06 -0.23 -13.44 16 8 C 0.13 2.45 4.45 -4.04 -0.02 2.43 16 9 C 0.12 2.43 3.21 -67.42 -0.22 2.21 16 10 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 11 C 0.06 0.99 6.29 37.31 0.23 1.23 16 12 O -0.39 -7.55 10.74 -35.23 -0.38 -7.93 16 13 C 0.03 0.66 6.98 37.31 0.26 0.92 16 14 C 0.14 3.28 5.36 -3.54 -0.02 3.26 16 15 N -0.59 -13.63 3.03 -164.30 -0.50 -14.13 16 16 C -0.26 -6.41 7.04 -15.06 -0.11 -6.51 16 17 H 0.07 1.80 5.82 -52.49 -0.31 1.50 16 18 C 0.02 0.49 5.08 -17.43 -0.09 0.40 16 19 N -0.90 -24.16 11.10 55.49 0.62 -23.54 16 20 Si 0.90 21.52 29.57 -169.99 -5.03 16.49 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 N -0.48 -9.01 9.60 -7.33 -0.07 -9.08 16 25 C 0.32 5.30 7.64 -157.30 -1.20 4.09 16 26 C -0.09 -1.13 10.31 36.01 0.37 -0.76 16 27 N -0.51 -7.89 10.25 -7.00 -0.07 -7.96 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.16 2.12 7.74 -52.48 -0.41 1.71 16 32 H 0.43 9.21 6.69 -40.82 -0.27 8.93 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.41 7.58 -51.93 -0.39 1.01 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 2.31 6.33 -51.93 -0.33 1.98 16 41 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -30.22 361.49 -8.46 -38.68 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.33 Total: 8.43 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: -2.00 Total: 18.41 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -0.25 Total: -68.16 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.29 Total: -19.30 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.22 -8.46 -38.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051164987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.837 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds