Wall clock time and date at job start Tue Mar 31 2020 12:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38808 * 120.42624 * 2 1 4 4 C 1.39490 * 118.26613 * 179.97438 * 3 2 1 5 5 C 1.48445 * 120.55258 * 180.02562 * 4 3 2 6 6 O 1.21482 * 120.00086 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00373 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00466 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47336 * 180.02562 * 8 7 5 10 10 H 1.09005 * 109.67767 * 300.03125 * 9 8 7 11 11 C 1.53295 * 109.68472 * 179.48284 * 9 8 7 12 12 O 1.42961 * 109.22501 * 187.97074 * 11 9 8 13 13 C 1.42959 * 114.16658 * 62.57852 * 12 11 9 14 14 C 1.53293 * 109.22509 * 297.42173 * 13 12 11 15 15 N 1.47146 * 108.38621 * 52.29871 * 14 13 12 16 16 C 1.36939 * 120.98365 * 129.74166 * 15 14 13 17 17 H 1.08002 * 120.00208 * 211.35215 * 16 15 14 18 18 C 1.38808 * 119.99934 * 31.35102 * 16 15 14 19 19 N 1.31621 * 119.99803 * 9.82331 * 18 16 15 20 20 Si 1.86804 * 120.00328 * 189.82304 * 18 16 15 21 21 H 1.48502 * 109.46730 * 89.99849 * 20 18 16 22 22 H 1.48499 * 109.47298 * 210.00019 * 20 18 16 23 23 H 1.48498 * 109.46713 * 330.00320 * 20 18 16 24 24 N 1.33108 * 118.89908 * 0.27299 * 4 3 2 25 25 C 1.31559 * 120.73329 * 359.44729 * 24 4 3 26 26 C 1.50699 * 119.03888 * 180.28241 * 25 24 4 27 27 N 1.31907 * 121.91829 * 0.57188 * 25 24 4 28 28 H 1.09000 * 109.47635 * 89.99859 * 1 2 3 29 29 H 1.09006 * 109.46825 * 209.99921 * 1 2 3 30 30 H 1.09007 * 109.47355 * 329.99277 * 1 2 3 31 31 H 1.08003 * 120.86465 * 0.02562 * 3 2 1 32 32 H 0.97005 * 119.99686 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.46988 * 59.99851 * 8 7 5 34 34 H 1.09000 * 109.46769 * 299.99920 * 8 7 5 35 35 H 1.09001 * 109.51050 * 307.89421 * 11 9 8 36 36 H 1.09003 * 109.51052 * 67.99183 * 11 9 8 37 37 H 1.09006 * 109.51225 * 57.34155 * 13 12 11 38 38 H 1.08998 * 109.51298 * 177.49113 * 13 12 11 39 39 H 1.09005 * 109.67953 * 292.57924 * 14 13 12 40 40 H 1.08999 * 109.68578 * 172.02736 * 14 13 12 41 41 H 0.97002 * 119.99453 * 179.97438 * 19 18 16 42 42 H 1.08990 * 109.47752 * 270.27650 * 26 25 24 43 43 H 1.09007 * 109.47081 * 30.28399 * 26 25 24 44 44 H 1.09001 * 109.46916 * 150.27586 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1443 0.0005 5 6 4.4061 2.3933 0.0011 6 8 3.8492 3.4730 0.0016 7 7 5.7524 2.3296 0.0022 8 6 6.5441 3.5623 0.0034 9 6 8.0334 3.2119 0.0038 10 1 8.2727 2.6272 0.8921 11 6 8.8666 4.4985 -0.0081 12 8 10.2443 4.1655 -0.1948 13 6 10.5278 3.5244 -1.4407 14 6 9.7797 2.1878 -1.5023 15 7 8.3605 2.4360 -1.2031 16 6 7.3730 1.9545 -2.0206 17 1 6.4474 2.5005 -2.1288 18 6 7.5616 0.7647 -2.7102 19 7 8.5987 0.0022 -2.4355 20 14 6.3436 0.2456 -4.0280 21 1 6.7753 0.7869 -5.3417 22 1 6.2903 -1.2368 -4.0966 23 1 4.9970 0.7745 -3.6931 24 7 4.2028 -0.0444 -0.0045 25 6 3.4954 -1.1536 0.0010 26 6 4.2130 -2.4788 0.0014 27 7 2.1764 -1.1396 0.0004 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8900 0.5140 31 1 1.6912 2.1442 0.0004 32 1 6.1971 1.4675 0.0022 33 1 6.3074 4.1453 0.8934 34 1 6.3088 4.1460 -0.8866 35 1 8.5335 5.1405 -0.8235 36 1 8.7429 5.0211 0.9405 37 1 10.2006 4.1628 -2.2615 38 1 11.5999 3.3457 -1.5226 39 1 10.1953 1.5002 -0.7657 40 1 9.8750 1.7593 -2.5000 41 1 8.7303 -0.8294 -2.9172 42 1 4.3864 -2.7985 -1.0260 43 1 5.1684 -2.3745 0.5157 44 1 3.6032 -3.2220 0.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051164987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:28 Heat of formation + Delta-G solvation = -24.179827 kcal Electronic energy + Delta-G solvation = -28012.513477 eV Core-core repulsion = 24158.267508 eV Total energy + Delta-G solvation = -3854.245969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.39774 -40.75203 -39.83919 -37.02711 -35.79947 -35.29963 -34.55908 -33.24078 -32.12771 -30.19928 -29.26165 -29.03984 -27.62248 -25.38249 -25.14318 -23.31678 -23.23775 -21.64352 -21.33261 -19.48588 -18.70939 -18.01428 -17.61631 -17.24384 -16.74355 -16.57805 -16.43601 -16.28088 -16.07676 -15.76410 -15.41197 -15.34583 -15.01349 -14.66072 -14.33045 -14.31108 -14.09107 -13.66430 -13.38384 -13.28152 -13.13625 -13.11050 -12.94983 -12.79174 -12.54754 -12.20202 -12.03894 -12.00857 -11.88326 -11.63177 -11.59342 -11.29253 -10.71341 -10.58865 -10.51794 -10.39947 -9.97823 -8.62478 -7.89623 -5.39562 -0.63614 -0.18211 1.32018 1.36453 1.40279 1.61413 1.98809 2.39961 2.65788 2.75632 2.86369 3.03594 3.27199 3.38816 3.47800 3.74282 3.86631 3.98596 4.19345 4.27149 4.30354 4.35065 4.48064 4.55916 4.61318 4.62086 4.63909 4.66319 4.71538 4.73014 4.80810 4.88699 5.00646 5.09957 5.10466 5.29122 5.35484 5.38803 5.63315 5.66305 5.78578 6.29545 6.36063 6.47862 6.88839 7.05403 7.10349 7.74707 8.30488 9.14956 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.004780 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.003591 B = 5855.761320 C = 6944.745335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.177 3.823 3 C -0.182 4.182 4 C 0.119 3.881 5 C 0.558 3.442 6 O -0.565 6.565 7 N -0.671 5.671 8 C 0.136 3.864 9 C 0.124 3.876 10 H 0.036 0.964 11 C 0.059 3.941 12 O -0.397 6.397 13 C 0.047 3.953 14 C 0.150 3.850 15 N -0.605 5.605 16 C -0.239 4.239 17 H 0.063 0.937 18 C -0.020 4.020 19 N -0.920 5.920 20 Si 0.938 3.062 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.292 1.292 24 N -0.515 5.515 25 C 0.307 3.693 26 C -0.082 4.082 27 N -0.516 5.516 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.419 0.581 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.120 0.880 37 H 0.044 0.956 38 H 0.105 0.895 39 H 0.006 0.994 40 H 0.066 0.934 41 H 0.250 0.750 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 0.866 6.147 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.028 3.972 3 C -0.205 4.205 4 C -0.027 4.027 5 C 0.342 3.658 6 O -0.445 6.445 7 N -0.320 5.320 8 C 0.013 3.987 9 C 0.018 3.982 10 H 0.053 0.947 11 C -0.019 4.019 12 O -0.315 6.315 13 C -0.031 4.031 14 C 0.024 3.976 15 N -0.331 5.331 16 C -0.369 4.369 17 H 0.080 0.920 18 C -0.218 4.218 19 N -0.565 5.565 20 Si 0.769 3.231 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.219 1.219 24 N -0.233 5.233 25 C 0.040 3.960 26 C -0.141 4.141 27 N -0.232 5.232 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.191 0.809 32 H 0.258 0.742 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.063 0.937 38 H 0.123 0.877 39 H 0.024 0.976 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.814 0.684 6.209 11.633 hybrid contribution -0.606 -0.295 -1.300 1.464 sum -10.421 0.388 4.909 11.526 Atomic orbital electron populations 1.20950 0.83660 1.05846 1.05186 1.22567 0.99853 0.86698 0.88057 1.22988 0.93654 1.02551 1.01340 1.21733 0.93115 0.92228 0.95660 1.18002 0.82876 0.87208 0.77714 1.90695 1.71912 1.28832 1.53108 1.46017 1.04962 1.11934 1.69102 1.21324 0.89485 0.86001 1.01939 1.21585 0.92602 0.93889 0.90129 0.94678 1.22973 0.81452 0.94786 1.02692 1.87805 1.25725 1.79124 1.38855 1.23216 1.00436 0.94095 0.85356 1.21249 0.83216 0.93078 1.00021 1.44288 1.02017 1.62758 1.24044 1.19133 0.97197 1.01050 1.19556 0.91966 1.25457 0.98571 0.95949 1.01788 1.70060 1.30538 1.13036 1.42898 0.85739 0.79382 0.77185 0.80818 1.21400 1.21645 1.21857 1.68266 1.42433 0.98665 1.13976 1.23782 0.87047 0.95125 0.90093 1.20673 1.00257 0.88691 1.04437 1.68162 1.09339 1.31074 1.14656 0.88077 0.88718 0.87547 0.80906 0.74234 0.89143 0.92283 0.92978 0.86209 0.93720 0.87729 0.97585 0.91519 0.93987 0.89578 0.89470 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 10.22 71.24 0.73 -0.72 16 2 C 0.18 4.51 6.83 42.64 0.29 4.80 16 3 C -0.18 -5.37 9.41 22.71 0.21 -5.15 16 4 C 0.12 4.36 6.79 41.97 0.29 4.65 16 5 C 0.56 22.11 7.83 86.96 0.68 22.79 16 6 O -0.57 -23.30 16.43 -3.66 -0.06 -23.36 16 7 N -0.67 -26.93 3.76 -465.39 -1.75 -28.68 16 8 C 0.14 4.95 4.45 86.38 0.38 5.33 16 9 C 0.12 4.76 3.21 44.96 0.14 4.90 16 10 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 11 C 0.06 1.93 6.29 72.08 0.45 2.39 16 12 O -0.40 -14.40 10.74 -148.98 -1.60 -16.00 16 13 C 0.05 1.72 6.98 72.08 0.50 2.23 16 14 C 0.15 6.85 5.36 86.35 0.46 7.31 16 15 N -0.61 -28.07 3.03 -673.74 -2.04 -30.12 16 16 C -0.24 -12.15 7.04 84.03 0.59 -11.56 16 17 H 0.06 3.26 5.82 -2.91 -0.02 3.24 16 18 C -0.02 -1.08 5.08 84.86 0.43 -0.65 16 19 N -0.92 -50.96 11.10 21.65 0.24 -50.72 16 20 Si 0.94 45.14 29.57 68.60 2.03 47.17 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 24 N -0.52 -19.46 9.60 -177.10 -1.70 -21.16 16 25 C 0.31 10.03 7.64 138.79 1.06 11.09 16 26 C -0.08 -2.16 10.31 71.24 0.73 -1.43 16 27 N -0.52 -15.11 10.25 -176.05 -1.81 -16.91 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.11 1.08 8.10 -2.38 -0.02 1.06 16 31 H 0.17 4.37 7.74 -2.91 -0.02 4.35 16 32 H 0.42 18.51 6.69 -92.70 -0.62 17.89 16 33 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 40 H 0.07 3.40 6.33 -2.39 -0.02 3.38 16 41 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 44 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -66.00 361.49 0.68 -65.33 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.41 Total: 28.47 kcal Atomic # 6 Polarization: 39.03 SS G_CDS: 6.96 Total: 45.99 kcal Atomic # 7 Polarization: -140.53 SS G_CDS: -7.06 Total: -147.59 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.66 Total: -39.36 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.00 0.68 -65.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051164987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.146 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds