Wall clock time and date at job start Tue Mar 31 2020 12:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38799 * 120.42572 * 2 1 4 4 C 1.39497 * 118.26352 * 180.02562 * 3 2 1 5 5 C 1.48450 * 120.54946 * 179.97438 * 4 3 2 6 6 O 1.21473 * 120.00171 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99984 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00159 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47200 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.67683 * 59.09883 * 9 8 7 11 11 C 1.53296 * 109.68109 * 179.61688 * 9 8 7 12 12 O 1.42963 * 109.21852 * 172.02118 * 11 9 8 13 13 C 1.42959 * 114.17156 * 297.42266 * 12 11 9 14 14 C 1.53290 * 109.22459 * 62.57958 * 13 12 11 15 15 N 1.47158 * 109.67984 * 298.58375 * 9 8 7 16 16 C 1.36932 * 120.98149 * 9.71295 * 15 9 8 17 17 H 1.08006 * 120.00083 * 329.54930 * 16 15 9 18 18 C 1.38812 * 120.00102 * 149.55462 * 16 15 9 19 19 N 1.31615 * 120.00446 * 163.23903 * 18 16 15 20 20 Si 1.86807 * 119.99662 * 343.23820 * 18 16 15 21 21 H 1.48501 * 109.46970 * 88.92291 * 20 18 16 22 22 H 1.48501 * 109.46714 * 208.92352 * 20 18 16 23 23 H 1.48495 * 109.47181 * 328.92333 * 20 18 16 24 24 N 1.33110 * 118.89840 * 359.75393 * 4 3 2 25 25 C 1.31555 * 120.73524 * 0.50204 * 24 4 3 26 26 C 1.50694 * 119.03802 * 179.76375 * 25 24 4 27 27 N 1.31907 * 121.91665 * 359.48008 * 25 24 4 28 28 H 1.09001 * 109.47254 * 269.97627 * 1 2 3 29 29 H 1.08997 * 109.47389 * 29.97888 * 1 2 3 30 30 H 1.08999 * 109.47262 * 149.98164 * 1 2 3 31 31 H 1.08002 * 120.87247 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99863 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.46893 * 299.99873 * 8 7 5 34 34 H 1.09002 * 109.46960 * 59.99337 * 8 7 5 35 35 H 1.08995 * 109.51301 * 291.94671 * 11 9 8 36 36 H 1.09002 * 109.50889 * 52.05406 * 11 9 8 37 37 H 1.09004 * 109.51131 * 182.51164 * 13 12 11 38 38 H 1.09000 * 109.51193 * 302.65210 * 13 12 11 39 39 H 1.09004 * 109.67939 * 67.42320 * 14 13 12 40 40 H 1.08994 * 109.68605 * 187.97272 * 14 13 12 41 41 H 0.96998 * 120.00430 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.47340 * 269.72774 * 26 25 24 43 43 H 1.09001 * 109.47553 * 29.72101 * 26 25 24 44 44 H 1.08996 * 109.47317 * 149.72674 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1968 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4061 2.3933 -0.0011 6 8 3.8493 3.4728 -0.0007 7 7 5.7525 2.3295 -0.0022 8 6 6.5442 3.5621 -0.0022 9 6 8.0335 3.2117 -0.0029 10 1 8.2697 2.6147 -0.8838 11 6 8.8666 4.4984 -0.0125 12 8 10.2450 4.1680 0.1743 13 6 10.5328 3.5449 1.4283 14 6 9.7849 2.2094 1.5118 15 7 8.3645 2.4526 1.2136 16 6 7.3800 1.9877 2.0441 17 1 6.4500 2.5292 2.1351 18 6 7.5774 0.8206 2.7691 19 7 6.8016 0.5444 3.7958 20 14 8.9442 -0.3582 2.2875 21 1 10.1963 0.0224 2.9895 22 1 8.5627 -1.7413 2.6706 23 1 9.1601 -0.2927 0.8198 24 7 4.2027 -0.0446 0.0040 25 6 3.4954 -1.1537 -0.0011 26 6 4.2129 -2.4789 -0.0011 27 7 2.1764 -1.1397 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6912 2.1442 -0.0004 32 1 6.1972 1.4674 -0.0022 33 1 6.3075 4.1459 -0.8918 34 1 6.3088 4.1452 0.8882 35 1 8.7404 5.0067 -0.9684 36 1 8.5357 5.1525 0.7942 37 1 11.6052 3.3675 1.5090 38 1 10.2086 4.1952 2.2408 39 1 10.1980 1.5113 0.7837 40 1 9.8838 1.7954 2.5152 41 1 6.9398 -0.2710 4.3027 42 1 4.3856 -2.7986 -1.0288 43 1 5.1688 -2.3746 0.5122 44 1 3.6036 -3.2221 0.5131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051164988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:33 Heat of formation + Delta-G solvation = 2.205058 kcal Electronic energy + Delta-G solvation = -27984.933153 eV Core-core repulsion = 24131.831318 eV Total energy + Delta-G solvation = -3853.101834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.08975 -39.30794 -38.45577 -35.53669 -34.55751 -33.68396 -33.27283 -31.70607 -30.99578 -29.20003 -28.06684 -27.59015 -26.18012 -23.98571 -23.40687 -22.17090 -22.06429 -20.17383 -19.85178 -18.02231 -17.18640 -16.55515 -16.05478 -15.86024 -15.45766 -15.29878 -15.07568 -14.96647 -14.60835 -14.35878 -14.05015 -13.97405 -13.59781 -13.41848 -13.05063 -12.97753 -12.58424 -12.50038 -12.34191 -12.19329 -12.07283 -11.88072 -11.61354 -11.15642 -10.80342 -10.77514 -10.56031 -10.36171 -10.34281 -10.04237 -9.83030 -9.62417 -9.38231 -9.26466 -9.06224 -8.70159 -8.38307 -7.03066 -6.03344 -3.46895 0.73803 1.05279 3.09011 3.23305 3.40858 3.42513 3.42899 3.94156 4.02126 4.09959 4.26618 4.42890 4.60714 4.70920 4.99550 5.08393 5.22959 5.32652 5.39533 5.41360 5.47455 5.53729 5.57936 5.63337 5.65275 5.75233 5.77026 5.86489 5.88999 5.91564 5.99492 6.06376 6.08718 6.19293 6.33398 6.48500 6.50056 6.68485 6.91547 7.06905 7.57535 7.79913 8.01096 8.22041 8.24826 8.63616 8.78114 9.58957 9.94536 11.10813 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.004726 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.299299 B = 5922.946412 C = 7165.655691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.172 3.828 3 C -0.183 4.183 4 C 0.152 3.848 5 C 0.565 3.435 6 O -0.549 6.549 7 N -0.666 5.666 8 C 0.133 3.867 9 C 0.127 3.873 10 H 0.047 0.953 11 C 0.055 3.945 12 O -0.388 6.388 13 C 0.046 3.954 14 C 0.091 3.909 15 N -0.606 5.606 16 C -0.269 4.269 17 H 0.094 0.906 18 C 0.035 3.965 19 N -0.900 5.900 20 Si 0.883 3.117 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.270 1.270 24 N -0.484 5.484 25 C 0.322 3.678 26 C -0.085 4.085 27 N -0.513 5.513 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.424 0.576 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.034 0.966 40 H 0.082 0.918 41 H 0.263 0.737 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 -0.460 -8.779 10.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.024 3.976 3 C -0.206 4.206 4 C 0.004 3.996 5 C 0.348 3.652 6 O -0.427 6.427 7 N -0.316 5.316 8 C 0.009 3.991 9 C 0.021 3.979 10 H 0.065 0.935 11 C -0.024 4.024 12 O -0.306 6.306 13 C -0.032 4.032 14 C -0.034 4.034 15 N -0.333 5.333 16 C -0.397 4.397 17 H 0.112 0.888 18 C -0.165 4.165 19 N -0.542 5.542 20 Si 0.713 3.287 21 H -0.217 1.217 22 H -0.231 1.231 23 H -0.195 1.195 24 N -0.201 5.201 25 C 0.054 3.946 26 C -0.144 4.144 27 N -0.230 5.230 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.174 0.826 32 H 0.263 0.737 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.927 -0.616 -8.769 10.077 hybrid contribution 0.429 -0.487 0.319 0.723 sum -4.498 -1.103 -8.450 9.636 Atomic orbital electron populations 1.20760 0.87525 1.03935 1.03797 1.21731 0.97612 0.87795 0.90456 1.22706 0.94786 1.01029 1.02116 1.21699 0.91895 0.92639 0.93366 1.17691 0.82815 0.86683 0.78040 1.90725 1.71689 1.28208 1.52082 1.45836 1.04720 1.11618 1.69445 1.21263 0.89607 0.86584 1.01664 1.21453 0.92260 0.93361 0.90847 0.93514 1.22899 0.82317 0.96030 1.01156 1.87827 1.25067 1.79996 1.37717 1.23072 0.99243 0.95144 0.85753 1.22057 0.85406 0.95353 1.00600 1.44424 1.01109 1.64672 1.23098 1.18929 0.97608 1.04694 1.18424 0.88844 1.25296 0.97094 0.97013 0.97099 1.69790 1.40193 1.26211 1.17967 0.86996 0.81651 0.80743 0.79263 1.21663 1.23091 1.19496 1.68262 1.41388 0.98035 1.12420 1.23177 0.86275 0.94706 0.90418 1.20585 1.00532 0.89583 1.03667 1.68008 1.09918 1.30478 1.14598 0.89580 0.90018 0.89960 0.82600 0.73675 0.91614 0.90657 0.89329 0.92861 0.89739 0.92989 0.94793 0.90008 0.92698 0.89728 0.89071 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.22 36.01 0.37 -0.60 16 2 C 0.17 2.43 6.83 -82.24 -0.56 1.87 16 3 C -0.18 -2.89 9.41 -38.90 -0.37 -3.25 16 4 C 0.15 2.84 6.79 -82.64 -0.56 2.27 16 5 C 0.56 11.29 7.83 -12.05 -0.09 11.19 16 6 O -0.55 -11.60 16.43 5.39 0.09 -11.51 16 7 N -0.67 -13.16 3.79 -61.05 -0.23 -13.39 16 8 C 0.13 2.40 4.44 -4.04 -0.02 2.39 16 9 C 0.13 2.34 3.20 -67.42 -0.22 2.13 16 10 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 11 C 0.05 0.89 6.29 37.31 0.23 1.12 16 12 O -0.39 -6.85 10.74 -35.23 -0.38 -7.23 16 13 C 0.05 0.81 6.99 37.31 0.26 1.07 16 14 C 0.09 1.89 4.38 -3.53 -0.02 1.87 16 15 N -0.61 -13.32 2.78 -164.29 -0.46 -13.78 16 16 C -0.27 -6.85 7.59 -15.06 -0.11 -6.97 16 17 H 0.09 2.61 5.98 -52.48 -0.31 2.30 16 18 C 0.04 0.96 5.29 -17.43 -0.09 0.87 16 19 N -0.90 -26.27 13.97 55.49 0.78 -25.50 16 20 Si 0.88 21.25 24.28 -169.99 -4.13 17.13 16 21 H -0.29 -6.76 6.54 56.52 0.37 -6.39 16 22 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 23 H -0.27 -6.39 6.65 56.52 0.38 -6.02 16 24 N -0.48 -9.13 9.60 -7.33 -0.07 -9.20 16 25 C 0.32 5.40 7.64 -157.30 -1.20 4.19 16 26 C -0.09 -1.14 10.31 36.00 0.37 -0.77 16 27 N -0.51 -8.06 10.25 -7.00 -0.07 -8.13 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.61 8.10 -51.93 -0.42 0.18 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.16 2.18 7.74 -52.49 -0.41 1.78 16 32 H 0.42 8.91 6.77 -40.82 -0.28 8.64 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.50 7.52 -51.93 -0.39 1.11 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.71 6.82 -51.93 -0.35 0.36 16 40 H 0.08 1.82 4.89 -51.93 -0.25 1.57 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -31.85 355.01 -7.39 -39.23 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.26 Total: 9.64 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: -2.01 Total: 17.38 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -0.06 Total: -70.00 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.29 Total: -18.74 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.13 Total: 17.13 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.85 -7.39 -39.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051164988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.439 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds