Wall clock time and date at job start Tue Mar 31 2020 12:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38799 * 120.42572 * 2 1 4 4 C 1.39497 * 118.26352 * 180.02562 * 3 2 1 5 5 C 1.48450 * 120.54946 * 179.97438 * 4 3 2 6 6 O 1.21473 * 120.00171 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99984 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00159 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47200 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.67683 * 59.09883 * 9 8 7 11 11 C 1.53296 * 109.68109 * 179.61688 * 9 8 7 12 12 O 1.42963 * 109.21852 * 172.02118 * 11 9 8 13 13 C 1.42959 * 114.17156 * 297.42266 * 12 11 9 14 14 C 1.53290 * 109.22459 * 62.57958 * 13 12 11 15 15 N 1.47158 * 109.67984 * 298.58375 * 9 8 7 16 16 C 1.36932 * 120.98149 * 9.71295 * 15 9 8 17 17 H 1.08006 * 120.00083 * 329.54930 * 16 15 9 18 18 C 1.38812 * 120.00102 * 149.55462 * 16 15 9 19 19 N 1.31615 * 120.00446 * 163.23903 * 18 16 15 20 20 Si 1.86807 * 119.99662 * 343.23820 * 18 16 15 21 21 H 1.48501 * 109.46970 * 88.92291 * 20 18 16 22 22 H 1.48501 * 109.46714 * 208.92352 * 20 18 16 23 23 H 1.48495 * 109.47181 * 328.92333 * 20 18 16 24 24 N 1.33110 * 118.89840 * 359.75393 * 4 3 2 25 25 C 1.31555 * 120.73524 * 0.50204 * 24 4 3 26 26 C 1.50694 * 119.03802 * 179.76375 * 25 24 4 27 27 N 1.31907 * 121.91665 * 359.48008 * 25 24 4 28 28 H 1.09001 * 109.47254 * 269.97627 * 1 2 3 29 29 H 1.08997 * 109.47389 * 29.97888 * 1 2 3 30 30 H 1.08999 * 109.47262 * 149.98164 * 1 2 3 31 31 H 1.08002 * 120.87247 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99863 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.46893 * 299.99873 * 8 7 5 34 34 H 1.09002 * 109.46960 * 59.99337 * 8 7 5 35 35 H 1.08995 * 109.51301 * 291.94671 * 11 9 8 36 36 H 1.09002 * 109.50889 * 52.05406 * 11 9 8 37 37 H 1.09004 * 109.51131 * 182.51164 * 13 12 11 38 38 H 1.09000 * 109.51193 * 302.65210 * 13 12 11 39 39 H 1.09004 * 109.67939 * 67.42320 * 14 13 12 40 40 H 1.08994 * 109.68605 * 187.97272 * 14 13 12 41 41 H 0.96998 * 120.00430 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.47340 * 269.72774 * 26 25 24 43 43 H 1.09001 * 109.47553 * 29.72101 * 26 25 24 44 44 H 1.08996 * 109.47317 * 149.72674 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1968 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4061 2.3933 -0.0011 6 8 3.8493 3.4728 -0.0007 7 7 5.7525 2.3295 -0.0022 8 6 6.5442 3.5621 -0.0022 9 6 8.0335 3.2117 -0.0029 10 1 8.2697 2.6147 -0.8838 11 6 8.8666 4.4984 -0.0125 12 8 10.2450 4.1680 0.1743 13 6 10.5328 3.5449 1.4283 14 6 9.7849 2.2094 1.5118 15 7 8.3645 2.4526 1.2136 16 6 7.3800 1.9877 2.0441 17 1 6.4500 2.5292 2.1351 18 6 7.5774 0.8206 2.7691 19 7 6.8016 0.5444 3.7958 20 14 8.9442 -0.3582 2.2875 21 1 10.1963 0.0224 2.9895 22 1 8.5627 -1.7413 2.6706 23 1 9.1601 -0.2927 0.8198 24 7 4.2027 -0.0446 0.0040 25 6 3.4954 -1.1537 -0.0011 26 6 4.2129 -2.4789 -0.0011 27 7 2.1764 -1.1397 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6912 2.1442 -0.0004 32 1 6.1972 1.4674 -0.0022 33 1 6.3075 4.1459 -0.8918 34 1 6.3088 4.1452 0.8882 35 1 8.7404 5.0067 -0.9684 36 1 8.5357 5.1525 0.7942 37 1 11.6052 3.3675 1.5090 38 1 10.2086 4.1952 2.2408 39 1 10.1980 1.5113 0.7837 40 1 9.8838 1.7954 2.5152 41 1 6.9398 -0.2710 4.3027 42 1 4.3856 -2.7986 -1.0288 43 1 5.1688 -2.3746 0.5122 44 1 3.6036 -3.2221 0.5131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051164988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:32 Heat of formation + Delta-G solvation = -21.393954 kcal Electronic energy + Delta-G solvation = -27985.956483 eV Core-core repulsion = 24131.831318 eV Total energy + Delta-G solvation = -3854.125164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.36553 -40.82652 -39.95661 -37.10125 -35.79071 -35.32520 -34.53462 -33.57526 -32.54583 -30.18194 -29.32097 -29.19108 -27.62356 -25.35600 -25.18850 -23.62485 -23.25100 -21.70889 -21.43032 -19.47760 -18.74089 -18.14873 -17.64480 -17.30863 -16.92465 -16.59806 -16.52282 -16.47045 -16.05416 -15.77504 -15.56131 -15.50223 -15.14106 -14.55958 -14.43939 -14.28127 -14.08565 -13.94230 -13.49105 -13.39280 -13.31804 -13.13002 -13.10275 -12.84823 -12.36326 -12.32453 -12.05999 -12.00504 -11.63606 -11.59593 -11.54044 -11.32208 -11.05071 -10.53605 -10.48637 -10.38257 -10.00121 -8.86398 -8.12276 -5.51242 -0.60282 -0.14747 1.29178 1.42110 1.49293 1.62660 2.00230 2.42380 2.68421 2.77130 2.85809 2.91191 3.03957 3.23457 3.44829 3.76776 3.88450 3.89871 4.09168 4.19484 4.27168 4.30862 4.33677 4.38983 4.46860 4.55797 4.63643 4.63796 4.67319 4.70794 4.73202 4.82766 4.89156 4.91014 4.93430 5.11595 5.17963 5.37755 5.39027 5.80588 5.85562 6.17314 6.20276 6.45882 6.84453 6.91219 7.06824 7.58434 7.98445 9.05759 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.004726 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.299299 B = 5922.946412 C = 7165.655691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.177 3.823 3 C -0.184 4.184 4 C 0.122 3.878 5 C 0.561 3.439 6 O -0.567 6.567 7 N -0.671 5.671 8 C 0.135 3.865 9 C 0.127 3.873 10 H 0.055 0.945 11 C 0.059 3.941 12 O -0.389 6.389 13 C 0.054 3.946 14 C 0.085 3.915 15 N -0.620 5.620 16 C -0.236 4.236 17 H 0.062 0.938 18 C -0.018 4.018 19 N -0.951 5.951 20 Si 0.939 3.061 21 H -0.277 1.277 22 H -0.316 1.316 23 H -0.263 1.263 24 N -0.514 5.514 25 C 0.307 3.693 26 C -0.082 4.082 27 N -0.516 5.516 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.171 0.829 32 H 0.416 0.584 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.127 0.873 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.050 0.950 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.258 0.742 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 -0.189 -10.554 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.028 3.972 3 C -0.207 4.207 4 C -0.025 4.025 5 C 0.345 3.655 6 O -0.447 6.447 7 N -0.319 5.319 8 C 0.012 3.988 9 C 0.021 3.979 10 H 0.073 0.927 11 C -0.020 4.020 12 O -0.307 6.307 13 C -0.024 4.024 14 C -0.040 4.040 15 N -0.347 5.347 16 C -0.365 4.365 17 H 0.080 0.920 18 C -0.214 4.214 19 N -0.596 5.596 20 Si 0.769 3.231 21 H -0.204 1.204 22 H -0.245 1.245 23 H -0.187 1.187 24 N -0.232 5.232 25 C 0.039 3.961 26 C -0.140 4.140 27 N -0.233 5.233 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.189 0.811 32 H 0.254 0.746 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.145 0.855 36 H 0.070 0.930 37 H 0.134 0.866 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.742 -0.305 -10.582 11.600 hybrid contribution 0.287 -0.498 0.824 1.005 sum -4.454 -0.803 -9.758 10.757 Atomic orbital electron populations 1.20942 0.83705 1.05826 1.05142 1.22542 0.99827 0.86697 0.88089 1.22965 0.93714 1.02497 1.01497 1.21690 0.93077 0.92217 0.95484 1.17987 0.82922 0.87195 0.77412 1.90688 1.71950 1.28968 1.53085 1.45890 1.04974 1.11666 1.69386 1.21327 0.89502 0.86095 1.01907 1.21658 0.92709 0.94190 0.89342 0.92730 1.22997 0.81208 0.94579 1.03195 1.87842 1.25605 1.79697 1.37557 1.23026 1.00586 0.92949 0.85846 1.22121 0.84868 0.97465 0.99556 1.44560 1.01199 1.64865 1.24103 1.18692 0.97048 1.03444 1.17285 0.92034 1.25798 0.99485 0.98697 0.97427 1.69926 1.43014 1.26756 1.19925 0.86078 0.79729 0.78094 0.79196 1.20408 1.24501 1.18729 1.68218 1.42436 0.98643 1.13929 1.23781 0.87074 0.95142 0.90055 1.20672 0.99621 0.88540 1.05194 1.68150 1.09369 1.31015 1.14722 0.88191 0.87569 0.88658 0.81119 0.74565 0.88665 0.92959 0.85546 0.93039 0.86565 0.93215 0.94513 0.91853 0.93324 0.87327 0.90751 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 10.22 71.24 0.73 -0.85 16 2 C 0.18 4.77 6.83 42.64 0.29 5.06 16 3 C -0.18 -5.72 9.41 22.71 0.21 -5.51 16 4 C 0.12 4.65 6.79 41.98 0.29 4.94 16 5 C 0.56 23.04 7.83 86.97 0.68 23.72 16 6 O -0.57 -24.37 16.43 -3.63 -0.06 -24.43 16 7 N -0.67 -27.11 3.79 -465.38 -1.76 -28.87 16 8 C 0.14 4.86 4.44 86.38 0.38 5.24 16 9 C 0.13 4.48 3.20 44.96 0.14 4.62 16 10 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 11 C 0.06 1.73 6.29 72.08 0.45 2.18 16 12 O -0.39 -12.45 10.74 -148.98 -1.60 -14.05 16 13 C 0.05 1.74 6.99 72.08 0.50 2.25 16 14 C 0.08 3.38 4.38 86.35 0.38 3.76 16 15 N -0.62 -26.95 2.78 -673.70 -1.88 -28.82 16 16 C -0.24 -12.29 7.59 84.03 0.64 -11.65 16 17 H 0.06 3.60 5.98 -2.91 -0.02 3.59 16 18 C -0.02 -1.02 5.29 84.86 0.45 -0.57 16 19 N -0.95 -57.81 13.97 21.65 0.30 -57.51 16 20 Si 0.94 44.75 24.28 68.60 1.67 46.41 16 21 H -0.28 -12.53 6.54 99.48 0.65 -11.88 16 22 H -0.32 -15.60 7.11 99.48 0.71 -14.89 16 23 H -0.26 -12.01 6.65 99.48 0.66 -11.35 16 24 N -0.51 -19.97 9.60 -177.09 -1.70 -21.67 16 25 C 0.31 10.32 7.64 138.79 1.06 11.38 16 26 C -0.08 -2.18 10.31 71.23 0.73 -1.44 16 27 N -0.52 -15.72 10.25 -176.06 -1.81 -17.53 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.11 1.20 8.10 -2.39 -0.02 1.18 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.17 4.65 7.74 -2.91 -0.02 4.62 16 32 H 0.42 18.05 6.77 -92.71 -0.63 17.42 16 33 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.05 2.12 7.52 -2.39 -0.02 2.10 16 35 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.04 1.46 6.82 -2.38 -0.02 1.44 16 40 H 0.06 2.76 4.89 -2.39 -0.01 2.75 16 41 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -71.23 355.01 0.41 -70.82 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.30 Total: 32.52 kcal Atomic # 6 Polarization: 36.19 SS G_CDS: 6.94 Total: 43.13 kcal Atomic # 7 Polarization: -147.56 SS G_CDS: -6.84 Total: -154.40 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.66 Total: -38.48 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.41 kcal Total: -71.23 0.41 -70.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051164988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.429 kcal (2) G-P(sol) polarization free energy of solvation -71.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds