Wall clock time and date at job start Tue Mar 31 2020 12:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31879 * 118.95450 * 2 1 4 4 C 1.32131 * 120.96801 * 179.97438 * 3 2 1 5 5 C 1.39972 * 118.92352 * 0.02562 * 4 3 2 6 6 C 1.47830 * 120.94036 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99768 * 174.77484 * 6 5 4 8 8 N 1.34776 * 120.00117 * 355.04327 * 6 5 4 9 9 C 1.46493 * 119.99972 * 179.72600 * 8 6 5 10 10 C 1.53005 * 109.47052 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.67525 * 301.31597 * 10 9 8 12 12 C 1.53296 * 109.67926 * 180.79890 * 10 9 8 13 13 O 1.42963 * 109.21953 * 187.97442 * 12 10 9 14 14 C 1.42965 * 114.16937 * 62.57974 * 13 12 10 15 15 C 1.53292 * 109.22397 * 297.42231 * 14 13 12 16 16 N 1.47154 * 109.68031 * 61.83619 * 10 9 8 17 17 C 1.36938 * 120.98145 * 350.22990 * 16 10 9 18 18 H 1.08000 * 119.99960 * 32.89631 * 17 16 10 19 19 C 1.38808 * 119.99875 * 212.88907 * 17 16 10 20 20 N 1.31626 * 120.00141 * 10.92993 * 19 17 16 21 21 Si 1.86804 * 120.00076 * 190.92648 * 19 17 16 22 22 H 1.48500 * 109.46852 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47121 * 120.00119 * 21 19 17 24 24 H 1.48493 * 109.47181 * 240.00437 * 21 19 17 25 25 C 1.39934 * 118.12069 * 0.27309 * 5 4 3 26 26 C 1.50697 * 120.53950 * 179.73282 * 25 5 4 27 27 N 1.31857 * 118.94786 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47689 * 89.99617 * 1 2 3 29 29 H 1.09001 * 109.47573 * 210.00169 * 1 2 3 30 30 H 1.09007 * 109.47270 * 329.99906 * 1 2 3 31 31 H 1.08004 * 120.54324 * 179.97438 * 4 3 2 32 32 H 0.97003 * 119.99903 * 359.73290 * 8 6 5 33 33 H 1.09001 * 109.47426 * 300.00114 * 9 8 6 34 34 H 1.08999 * 109.47467 * 60.00507 * 9 8 6 35 35 H 1.08999 * 109.51760 * 307.89233 * 12 10 9 36 36 H 1.09001 * 109.51441 * 68.00704 * 12 10 9 37 37 H 1.09002 * 109.51021 * 57.34310 * 14 13 12 38 38 H 1.09000 * 109.51460 * 177.49617 * 14 13 12 39 39 H 1.08998 * 109.68773 * 172.02175 * 15 14 13 40 40 H 1.09008 * 109.68181 * 292.54026 * 15 14 13 41 41 H 0.96996 * 119.99630 * 179.97438 * 20 19 17 42 42 H 1.08990 * 109.47253 * 83.19526 * 26 25 5 43 43 H 1.09001 * 109.46975 * 203.20038 * 26 25 5 44 44 H 1.09003 * 109.46661 * 323.19240 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1539 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0002 0.0005 6 6 5.6638 -0.0003 0.0016 7 8 6.2714 -1.0487 0.0975 8 7 6.3378 1.1625 -0.0982 9 6 7.8028 1.1629 -0.0910 10 6 8.3130 2.6000 -0.2153 11 1 7.9367 3.0447 -1.1366 12 6 9.8459 2.6043 -0.2284 13 8 10.3134 3.9535 -0.1570 14 6 9.9472 4.6371 1.0440 15 6 8.4195 4.7368 1.1223 16 7 7.8557 3.3898 0.9391 17 6 6.9332 2.8861 1.8168 18 1 6.9112 1.8273 2.0286 19 6 6.0265 3.7365 2.4345 20 7 5.9062 4.9811 2.0236 21 14 4.9767 3.1144 3.8490 22 1 5.3009 1.6901 4.1168 23 1 5.2545 3.9217 5.0640 24 1 3.5408 3.2368 3.4909 25 6 3.4660 -1.2004 -0.0059 26 6 4.1855 -2.5245 -0.0123 27 7 2.1452 -1.1538 0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 3.9817 2.1493 0.0001 32 1 5.8529 1.9992 -0.1746 33 1 8.1617 0.7298 0.8426 34 1 8.1704 0.5727 -0.9304 35 1 10.2189 2.0440 0.6290 36 1 10.2034 2.1426 -1.1487 37 1 10.3205 4.0841 1.9060 38 1 10.3776 5.6385 1.0387 39 1 8.1265 5.1280 2.0966 40 1 8.0540 5.3978 0.3363 41 1 5.2723 5.5751 2.4550 42 1 4.4655 -2.7908 1.0068 43 1 3.5292 -3.2926 -0.4214 44 1 5.0822 -2.4477 -0.6273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051172571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:37 Heat of formation + Delta-G solvation = -4.039692 kcal Electronic energy + Delta-G solvation = -28100.770407 eV Core-core repulsion = 24247.397779 eV Total energy + Delta-G solvation = -3853.372627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.20906 -39.25035 -38.33203 -35.55015 -34.40390 -33.68286 -33.38561 -31.63481 -30.55894 -29.17308 -28.50771 -27.23370 -25.43753 -23.79992 -23.53509 -22.46003 -21.66618 -20.35355 -19.74037 -17.78478 -17.64311 -16.50935 -16.01826 -15.79074 -15.71662 -15.45807 -14.92069 -14.68528 -14.41292 -14.05161 -13.89140 -13.77421 -13.45409 -13.15969 -13.08787 -12.96044 -12.72050 -12.43073 -12.36325 -12.13337 -11.90728 -11.63303 -11.46618 -11.14177 -10.97123 -10.83850 -10.48650 -10.46241 -10.31873 -10.15587 -9.71973 -9.47016 -9.34997 -9.20390 -9.03281 -8.76949 -8.41892 -6.80081 -6.00476 -3.51987 0.56076 1.11963 3.09735 3.21069 3.32076 3.33564 3.50877 3.87421 3.89108 4.09311 4.25783 4.46699 4.50437 4.92437 5.02595 5.09038 5.16908 5.22728 5.41415 5.43087 5.49993 5.64143 5.66454 5.74999 5.77256 5.78217 5.92511 5.95047 5.99511 6.09228 6.14595 6.20468 6.26321 6.44696 6.47218 6.66735 6.92044 6.98577 7.00924 7.40535 7.62099 7.79843 7.96673 8.10258 8.20724 8.56942 8.96390 9.56197 10.16778 11.05524 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.004809 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.951439 B = 5821.283919 C = 7045.681812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.331 3.669 3 N -0.525 5.525 4 C 0.196 3.804 5 C -0.246 4.246 6 C 0.563 3.437 7 O -0.548 6.548 8 N -0.686 5.686 9 C 0.137 3.863 10 C 0.124 3.876 11 H 0.042 0.958 12 C 0.056 3.944 13 O -0.392 6.392 14 C 0.035 3.965 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.259 4.259 18 H 0.072 0.928 19 C 0.015 3.985 20 N -0.894 5.894 21 Si 0.886 3.114 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.232 3.768 26 C -0.107 4.107 27 N -0.530 5.530 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.179 0.821 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.257 0.743 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 -7.171 -5.114 9.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 N -0.240 5.240 4 C 0.029 3.971 5 C -0.253 4.253 6 C 0.348 3.652 7 O -0.429 6.429 8 N -0.336 5.336 9 C 0.013 3.987 10 C 0.017 3.983 11 H 0.060 0.940 12 C -0.023 4.023 13 O -0.310 6.310 14 C -0.043 4.043 15 C 0.019 3.981 16 N -0.317 5.317 17 C -0.389 4.389 18 H 0.089 0.911 19 C -0.186 4.186 20 N -0.537 5.537 21 Si 0.715 3.285 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.211 1.211 25 C 0.085 3.915 26 C -0.164 4.164 27 N -0.246 5.246 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.196 0.804 32 H 0.252 0.748 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.447 -7.654 -5.119 9.832 hybrid contribution -0.100 0.369 1.188 1.248 sum -3.547 -7.284 -3.931 9.005 Atomic orbital electron populations 1.20599 0.85613 1.04282 1.03906 1.23471 0.98357 0.83557 0.88178 1.68314 1.09917 1.29864 1.15929 1.23709 0.89460 0.98325 0.85565 1.21661 0.96586 0.96122 1.10971 1.17644 0.85652 0.84363 0.77499 1.90675 1.69512 1.31061 1.51657 1.45891 1.07734 1.08776 1.71217 1.21222 0.79339 0.96667 1.01502 1.21452 0.93388 0.90961 0.92513 0.94013 1.22855 0.94609 0.83966 1.00850 1.87808 1.76503 1.25546 1.41169 1.23345 0.99057 0.95702 0.86194 1.21388 0.87608 0.86802 1.02263 1.44074 1.47877 1.14436 1.25284 1.19204 1.07825 0.93592 1.18238 0.91087 1.25149 0.97178 0.96492 0.99743 1.69977 1.37111 1.05394 1.41187 0.86467 0.80515 0.78641 0.82876 1.20196 1.21180 1.21132 1.21947 0.88746 0.95686 0.85122 1.21041 1.00347 0.90330 1.04681 1.68210 1.09236 1.30138 1.16997 0.89438 0.89580 0.89413 0.80404 0.74823 0.91083 0.91932 0.93454 0.89854 0.94086 0.90200 0.89329 0.95105 0.93303 0.89359 0.91049 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.31 36.00 0.37 -0.53 16 2 C 0.33 5.01 7.64 -157.07 -1.20 3.81 16 3 N -0.53 -8.84 10.31 -10.39 -0.11 -8.95 16 4 C 0.20 3.34 10.80 -16.77 -0.18 3.16 16 5 C -0.25 -4.18 5.91 -104.69 -0.62 -4.80 16 6 C 0.56 10.05 7.73 -12.34 -0.10 9.95 16 7 O -0.55 -10.39 13.53 5.32 0.07 -10.32 16 8 N -0.69 -12.15 3.82 -61.26 -0.23 -12.39 16 9 C 0.14 2.35 4.44 -4.04 -0.02 2.33 16 10 C 0.12 2.28 3.19 -67.42 -0.22 2.06 16 11 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 12 C 0.06 0.94 6.29 37.31 0.23 1.17 16 13 O -0.39 -7.30 10.74 -35.23 -0.38 -7.68 16 14 C 0.03 0.64 6.99 37.31 0.26 0.90 16 15 C 0.14 3.15 5.37 -3.53 -0.02 3.13 16 16 N -0.59 -12.92 3.02 -164.29 -0.50 -13.42 16 17 C -0.26 -6.13 7.06 -15.06 -0.11 -6.23 16 18 H 0.07 1.73 5.91 -52.49 -0.31 1.42 16 19 C 0.01 0.37 5.04 -17.43 -0.09 0.28 16 20 N -0.89 -23.20 11.28 55.49 0.63 -22.57 16 21 Si 0.89 20.52 29.57 -169.99 -5.03 15.49 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.23 3.72 6.87 -81.81 -0.56 3.15 16 26 C -0.11 -1.47 8.98 36.00 0.32 -1.14 16 27 N -0.53 -8.30 10.26 -6.67 -0.07 -8.37 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.18 2.99 6.57 -52.48 -0.34 2.64 16 32 H 0.41 7.61 5.59 -40.82 -0.23 7.38 16 33 H 0.07 1.33 7.48 -51.93 -0.39 0.94 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.09 2.13 6.48 -51.93 -0.34 1.79 16 40 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.11 1.55 5.98 -51.93 -0.31 1.24 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -28.53 354.48 -8.31 -36.84 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.13 Total: 8.78 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: -1.91 Total: 17.25 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -0.28 Total: -65.70 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.31 Total: -17.99 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.53 -8.31 -36.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051172571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.797 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds