Wall clock time and date at job start Tue Mar 31 2020 12:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31879 * 118.95450 * 2 1 4 4 C 1.32131 * 120.96801 * 179.97438 * 3 2 1 5 5 C 1.39972 * 118.92352 * 0.02562 * 4 3 2 6 6 C 1.47830 * 120.94036 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99768 * 174.77484 * 6 5 4 8 8 N 1.34776 * 120.00117 * 355.04327 * 6 5 4 9 9 C 1.46493 * 119.99972 * 179.72600 * 8 6 5 10 10 C 1.53005 * 109.47052 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.67525 * 301.31597 * 10 9 8 12 12 C 1.53296 * 109.67926 * 180.79890 * 10 9 8 13 13 O 1.42963 * 109.21953 * 187.97442 * 12 10 9 14 14 C 1.42965 * 114.16937 * 62.57974 * 13 12 10 15 15 C 1.53292 * 109.22397 * 297.42231 * 14 13 12 16 16 N 1.47154 * 109.68031 * 61.83619 * 10 9 8 17 17 C 1.36938 * 120.98145 * 350.22990 * 16 10 9 18 18 H 1.08000 * 119.99960 * 32.89631 * 17 16 10 19 19 C 1.38808 * 119.99875 * 212.88907 * 17 16 10 20 20 N 1.31626 * 120.00141 * 10.92993 * 19 17 16 21 21 Si 1.86804 * 120.00076 * 190.92648 * 19 17 16 22 22 H 1.48500 * 109.46852 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47121 * 120.00119 * 21 19 17 24 24 H 1.48493 * 109.47181 * 240.00437 * 21 19 17 25 25 C 1.39934 * 118.12069 * 0.27309 * 5 4 3 26 26 C 1.50697 * 120.53950 * 179.73282 * 25 5 4 27 27 N 1.31857 * 118.94786 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47689 * 89.99617 * 1 2 3 29 29 H 1.09001 * 109.47573 * 210.00169 * 1 2 3 30 30 H 1.09007 * 109.47270 * 329.99906 * 1 2 3 31 31 H 1.08004 * 120.54324 * 179.97438 * 4 3 2 32 32 H 0.97003 * 119.99903 * 359.73290 * 8 6 5 33 33 H 1.09001 * 109.47426 * 300.00114 * 9 8 6 34 34 H 1.08999 * 109.47467 * 60.00507 * 9 8 6 35 35 H 1.08999 * 109.51760 * 307.89233 * 12 10 9 36 36 H 1.09001 * 109.51441 * 68.00704 * 12 10 9 37 37 H 1.09002 * 109.51021 * 57.34310 * 14 13 12 38 38 H 1.09000 * 109.51460 * 177.49617 * 14 13 12 39 39 H 1.08998 * 109.68773 * 172.02175 * 15 14 13 40 40 H 1.09008 * 109.68181 * 292.54026 * 15 14 13 41 41 H 0.96996 * 119.99630 * 179.97438 * 20 19 17 42 42 H 1.08990 * 109.47253 * 83.19526 * 26 25 5 43 43 H 1.09001 * 109.46975 * 203.20038 * 26 25 5 44 44 H 1.09003 * 109.46661 * 323.19240 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1539 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0002 0.0005 6 6 5.6638 -0.0003 0.0016 7 8 6.2714 -1.0487 0.0975 8 7 6.3378 1.1625 -0.0982 9 6 7.8028 1.1629 -0.0910 10 6 8.3130 2.6000 -0.2153 11 1 7.9367 3.0447 -1.1366 12 6 9.8459 2.6043 -0.2284 13 8 10.3134 3.9535 -0.1570 14 6 9.9472 4.6371 1.0440 15 6 8.4195 4.7368 1.1223 16 7 7.8557 3.3898 0.9391 17 6 6.9332 2.8861 1.8168 18 1 6.9112 1.8273 2.0286 19 6 6.0265 3.7365 2.4345 20 7 5.9062 4.9811 2.0236 21 14 4.9767 3.1144 3.8490 22 1 5.3009 1.6901 4.1168 23 1 5.2545 3.9217 5.0640 24 1 3.5408 3.2368 3.4909 25 6 3.4660 -1.2004 -0.0059 26 6 4.1855 -2.5245 -0.0123 27 7 2.1452 -1.1538 0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 3.9817 2.1493 0.0001 32 1 5.8529 1.9992 -0.1746 33 1 8.1617 0.7298 0.8426 34 1 8.1704 0.5727 -0.9304 35 1 10.2189 2.0440 0.6290 36 1 10.2034 2.1426 -1.1487 37 1 10.3205 4.0841 1.9060 38 1 10.3776 5.6385 1.0387 39 1 8.1265 5.1280 2.0966 40 1 8.0540 5.3978 0.3363 41 1 5.2723 5.5751 2.4550 42 1 4.4655 -2.7908 1.0068 43 1 3.5292 -3.2926 -0.4214 44 1 5.0822 -2.4477 -0.6273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051172571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:36 Heat of formation + Delta-G solvation = -22.430355 kcal Electronic energy + Delta-G solvation = -28101.567886 eV Core-core repulsion = 24247.397779 eV Total energy + Delta-G solvation = -3854.170106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.46156 -40.68846 -39.80926 -37.04697 -35.76377 -35.18169 -34.65179 -33.24831 -32.17716 -30.19991 -29.75372 -28.92367 -26.85273 -25.25058 -25.04465 -23.77905 -23.07120 -21.74141 -21.34840 -19.19129 -19.01493 -18.12922 -17.59962 -17.16987 -16.97985 -16.75371 -16.35456 -16.26281 -16.05107 -15.53465 -15.36078 -15.22102 -14.84783 -14.61057 -14.39218 -14.21617 -14.07360 -13.54623 -13.38077 -13.29567 -13.15347 -13.12007 -12.95433 -12.78992 -12.72374 -12.51215 -12.18563 -11.99510 -11.88053 -11.69105 -11.28237 -10.88578 -10.65367 -10.58804 -10.55916 -10.46471 -9.88895 -8.61633 -7.91001 -5.42251 -0.69506 -0.15360 1.32195 1.41221 1.44040 1.74642 2.13734 2.39193 2.59990 2.79314 2.88705 3.05010 3.24887 3.25859 3.43738 3.62842 3.79858 4.00424 4.08899 4.24103 4.33841 4.38283 4.49066 4.60976 4.64192 4.65102 4.66329 4.67488 4.70026 4.76880 4.79431 4.88919 5.01942 5.11643 5.14674 5.30089 5.34247 5.50613 5.62980 5.67517 5.76342 6.30637 6.36593 6.53288 6.86633 7.08509 7.14260 7.74024 8.31455 9.13002 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.004809 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.951439 B = 5821.283919 C = 7045.681812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.326 3.674 3 N -0.544 5.544 4 C 0.191 3.809 5 C -0.262 4.262 6 C 0.565 3.435 7 O -0.560 6.560 8 N -0.689 5.689 9 C 0.142 3.858 10 C 0.124 3.876 11 H 0.039 0.961 12 C 0.058 3.942 13 O -0.397 6.397 14 C 0.047 3.953 15 C 0.150 3.850 16 N -0.604 5.604 17 C -0.238 4.238 18 H 0.067 0.933 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 0.928 3.072 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.228 3.772 26 C -0.101 4.101 27 N -0.532 5.532 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.172 0.828 32 H 0.409 0.591 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.119 0.881 37 H 0.044 0.956 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.008 0.992 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -8.612 -5.843 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.061 3.939 3 N -0.259 5.259 4 C 0.025 3.975 5 C -0.269 4.269 6 C 0.352 3.648 7 O -0.442 6.442 8 N -0.339 5.339 9 C 0.019 3.981 10 C 0.018 3.982 11 H 0.056 0.944 12 C -0.021 4.021 13 O -0.316 6.316 14 C -0.031 4.031 15 C 0.024 3.976 16 N -0.330 5.330 17 C -0.368 4.368 18 H 0.084 0.916 19 C -0.219 4.219 20 N -0.564 5.564 21 Si 0.758 3.242 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.220 1.220 25 C 0.081 3.919 26 C -0.157 4.157 27 N -0.248 5.248 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.189 0.811 32 H 0.246 0.754 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.062 0.938 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.026 0.974 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.305 -9.115 -5.856 11.327 hybrid contribution -0.165 0.761 1.364 1.570 sum -3.470 -8.354 -4.493 10.100 Atomic orbital electron populations 1.20793 0.82404 1.05382 1.05582 1.24371 1.00241 0.82931 0.86407 1.68381 1.09724 1.30909 1.16922 1.23669 0.89930 0.98250 0.85675 1.21619 0.96098 0.96615 1.12598 1.17734 0.86023 0.84074 0.77011 1.90664 1.69888 1.31310 1.52328 1.45913 1.08010 1.08622 1.71308 1.21215 0.79043 0.96053 1.01832 1.21593 0.94843 0.90934 0.90807 0.94354 1.22994 0.92854 0.83366 1.02884 1.87812 1.76329 1.26442 1.41013 1.23200 0.96227 0.97200 0.86495 1.21215 0.90073 0.86374 0.99906 1.44272 1.47703 1.14712 1.26335 1.19201 1.07048 0.93080 1.17489 0.91595 1.25483 0.98381 0.96728 1.01292 1.70066 1.38021 1.06049 1.42248 0.85821 0.79293 0.77701 0.81383 1.20643 1.21798 1.21967 1.22351 0.89148 0.96200 0.84168 1.21029 1.00261 0.89760 1.04681 1.68345 1.08911 1.30217 1.17354 0.87248 0.87937 0.88788 0.81065 0.75351 0.92504 0.89301 0.93100 0.86308 0.93767 0.87884 0.92011 0.97353 0.93970 0.89236 0.88852 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 10.31 71.23 0.73 -0.84 16 2 C 0.33 9.42 7.64 138.70 1.06 10.48 16 3 N -0.54 -18.08 10.31 -186.79 -1.93 -20.00 16 4 C 0.19 6.57 10.80 85.07 0.92 7.49 16 5 C -0.26 -8.83 5.91 -19.91 -0.12 -8.94 16 6 C 0.57 19.94 7.73 86.78 0.67 20.61 16 7 O -0.56 -20.72 13.53 -3.88 -0.05 -20.77 16 8 N -0.69 -24.17 3.82 -466.00 -1.78 -25.95 16 9 C 0.14 4.70 4.44 86.38 0.38 5.08 16 10 C 0.12 4.41 3.19 44.97 0.14 4.55 16 11 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 12 C 0.06 1.77 6.29 72.08 0.45 2.22 16 13 O -0.40 -13.86 10.74 -148.98 -1.60 -15.46 16 14 C 0.05 1.65 6.99 72.08 0.50 2.15 16 15 C 0.15 6.54 5.37 86.35 0.46 7.01 16 16 N -0.60 -26.30 3.02 -673.68 -2.04 -28.34 16 17 C -0.24 -11.29 7.06 84.03 0.59 -10.70 16 18 H 0.07 3.21 5.91 -2.91 -0.02 3.19 16 19 C -0.02 -1.07 5.04 84.86 0.43 -0.64 16 20 N -0.92 -48.84 11.28 21.65 0.24 -48.59 16 21 Si 0.93 42.92 29.57 68.60 2.03 44.95 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 25 C 0.23 7.08 6.87 42.92 0.29 7.37 16 26 C -0.10 -2.60 8.98 71.23 0.64 -1.96 16 27 N -0.53 -15.86 10.26 -175.03 -1.80 -17.65 16 28 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.17 5.96 6.57 -2.91 -0.02 5.94 16 32 H 0.41 15.20 5.59 -92.71 -0.52 14.68 16 33 H 0.06 2.06 7.48 -2.39 -0.02 2.04 16 34 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.06 3.03 6.48 -2.39 -0.02 3.01 16 40 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 41 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.10 2.77 5.98 -2.39 -0.01 2.76 16 Total: -1.00 -60.64 354.48 0.77 -59.88 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.51 Total: 28.08 kcal Atomic # 6 Polarization: 36.70 SS G_CDS: 7.17 Total: 43.87 kcal Atomic # 7 Polarization: -133.25 SS G_CDS: -7.29 Total: -140.54 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.65 Total: -36.23 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -60.64 0.77 -59.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051172571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.446 kcal (2) G-P(sol) polarization free energy of solvation -60.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds