Wall clock time and date at job start Tue Mar 31 2020 12:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31888 * 118.94861 * 2 1 4 4 C 1.32134 * 120.96354 * 180.02562 * 3 2 1 5 5 C 1.39970 * 118.92594 * 0.02562 * 4 3 2 6 6 C 1.47834 * 120.94013 * 180.02562 * 5 4 3 7 7 O 1.21554 * 119.99779 * 173.94130 * 6 5 4 8 8 N 1.34779 * 119.99810 * 353.93667 * 6 5 4 9 9 C 1.46500 * 119.99741 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47280 * 180.02562 * 9 8 6 11 11 H 1.09007 * 109.67615 * 59.64948 * 10 9 8 12 12 C 1.53289 * 109.71445 * 180.19050 * 10 9 8 13 13 O 1.42966 * 109.22116 * 172.04218 * 12 10 9 14 14 C 1.42962 * 114.16693 * 297.42056 * 13 12 10 15 15 C 1.52871 * 109.29799 * 62.44820 * 14 13 12 16 16 N 1.47143 * 108.61054 * 307.93594 * 15 14 13 17 17 C 1.36939 * 120.98329 * 230.50109 * 16 15 14 18 18 H 1.08001 * 119.99840 * 147.22737 * 17 16 15 19 19 C 1.38813 * 119.99935 * 327.22749 * 17 16 15 20 20 N 1.31621 * 119.99749 * 349.31620 * 19 17 16 21 21 Si 1.86801 * 119.99862 * 169.31870 * 19 17 16 22 22 H 1.48502 * 109.46671 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47026 * 299.99824 * 21 19 17 24 24 H 1.48489 * 109.47391 * 59.99841 * 21 19 17 25 25 C 1.39927 * 118.12079 * 0.26972 * 5 4 3 26 26 C 1.50699 * 120.53949 * 179.71116 * 25 5 4 27 27 N 1.31854 * 118.95638 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47644 * 90.00000 * 1 2 3 29 29 H 1.09008 * 109.47033 * 209.99522 * 1 2 3 30 30 H 1.08996 * 109.47218 * 329.99213 * 1 2 3 31 31 H 1.08005 * 120.53604 * 179.97438 * 4 3 2 32 32 H 0.97001 * 120.00191 * 0.02562 * 8 6 5 33 33 H 1.08994 * 109.47284 * 60.00211 * 9 8 6 34 34 H 1.09007 * 109.46954 * 300.00124 * 9 8 6 35 35 H 1.08996 * 109.51286 * 291.96415 * 12 10 9 36 36 H 1.09001 * 109.51256 * 52.06855 * 12 10 9 37 37 H 1.09003 * 109.51012 * 182.50985 * 14 13 12 38 38 H 1.09001 * 109.51130 * 302.65177 * 14 13 12 39 39 H 1.09006 * 109.61791 * 188.11031 * 15 14 13 40 40 H 1.09000 * 109.52348 * 67.70181 * 15 14 13 41 41 H 0.96999 * 119.99656 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.47488 * 83.30775 * 26 25 5 43 43 H 1.09006 * 109.47099 * 203.31513 * 26 25 5 44 44 H 1.09000 * 109.46710 * 323.30928 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4658 1.2005 -0.0005 5 6 4.1855 0.0000 -0.0016 6 6 5.6638 0.0000 -0.0016 7 8 6.2716 -1.0469 0.1085 8 7 6.3377 1.1609 -0.1239 9 6 7.8027 1.1608 -0.1245 10 6 8.3127 2.5954 -0.2748 11 1 7.9464 3.2037 0.5523 12 6 9.8456 2.6013 -0.2809 13 8 10.3099 3.9137 -0.6063 14 6 9.9285 4.3633 -1.9087 15 6 8.4041 4.4449 -1.9887 16 7 7.8413 3.1579 -1.5503 17 6 6.9107 2.5002 -2.3097 18 1 6.8848 1.4205 -2.3165 19 6 6.0008 3.2212 -3.0706 20 7 5.8900 4.5223 -2.9057 21 14 4.9336 2.3448 -4.3286 22 1 4.0533 3.3317 -5.0042 23 1 5.7996 1.6828 -5.3370 24 1 4.1000 1.3236 -3.6451 25 6 3.4661 -1.2001 -0.0079 26 6 4.1857 -2.5242 -0.0159 27 7 2.1453 -1.1537 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.9815 2.1495 -0.0009 32 1 5.8527 1.9963 -0.2115 33 1 8.1656 0.5568 -0.9560 34 1 8.1664 0.7428 0.8142 35 1 10.2146 2.3186 0.7049 36 1 10.2094 1.8910 -1.0234 37 1 10.3574 5.3481 -2.0939 38 1 10.2928 3.6601 -2.6577 39 1 8.1018 4.6468 -3.0164 40 1 8.0473 5.2425 -1.3372 41 1 5.2544 5.0262 -3.4377 42 1 4.4652 -2.7921 1.0030 43 1 3.5297 -3.2918 -0.4266 44 1 5.0828 -2.4464 -0.6301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051172572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:40 Heat of formation + Delta-G solvation = -21.982887 kcal Electronic energy + Delta-G solvation = -28120.171619 eV Core-core repulsion = 24266.020917 eV Total energy + Delta-G solvation = -3854.150702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.45515 -40.69410 -39.81423 -37.05166 -35.76253 -35.17640 -34.64812 -33.24992 -32.19155 -30.20487 -29.75714 -28.94212 -26.84485 -25.25458 -25.04270 -23.77627 -23.07152 -21.73288 -21.34632 -19.19851 -19.01283 -18.12846 -17.57872 -17.20942 -16.98796 -16.72233 -16.35925 -16.27543 -16.05173 -15.53225 -15.37556 -15.21648 -14.84047 -14.62423 -14.35606 -14.21576 -14.09215 -13.55052 -13.38303 -13.32429 -13.20987 -13.05758 -12.95201 -12.77022 -12.73588 -12.51564 -12.22676 -11.98981 -11.87329 -11.68569 -11.28963 -10.88491 -10.64538 -10.59607 -10.56345 -10.46909 -9.87712 -8.61527 -7.90970 -5.41924 -0.68726 -0.14820 1.33162 1.40107 1.41791 1.74191 2.14327 2.39185 2.61191 2.79494 2.88613 3.04939 3.24862 3.26133 3.43903 3.62621 3.80507 4.00433 4.08858 4.23748 4.33739 4.37825 4.49237 4.61761 4.63475 4.64350 4.66375 4.67691 4.68882 4.77028 4.78993 4.88413 5.01998 5.11221 5.14295 5.30319 5.34008 5.50395 5.63181 5.66695 5.76112 6.30368 6.36469 6.53861 6.86503 7.08388 7.14582 7.74197 8.31303 9.12887 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.004798 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.430347 B = 5834.708997 C = 6960.958041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.325 3.675 3 N -0.543 5.543 4 C 0.193 3.807 5 C -0.262 4.262 6 C 0.565 3.435 7 O -0.560 6.560 8 N -0.689 5.689 9 C 0.142 3.858 10 C 0.124 3.876 11 H 0.039 0.961 12 C 0.057 3.943 13 O -0.397 6.397 14 C 0.047 3.953 15 C 0.150 3.850 16 N -0.604 5.604 17 C -0.240 4.240 18 H 0.067 0.933 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 0.935 3.065 22 H -0.295 1.295 23 H -0.284 1.284 24 H -0.290 1.290 25 C 0.226 3.774 26 C -0.100 4.100 27 N -0.534 5.534 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.176 0.824 32 H 0.409 0.591 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.008 0.992 41 H 0.251 0.749 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.705 -7.322 6.809 10.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.059 3.941 3 N -0.258 5.258 4 C 0.026 3.974 5 C -0.270 4.270 6 C 0.351 3.649 7 O -0.442 6.442 8 N -0.338 5.338 9 C 0.018 3.982 10 C 0.018 3.982 11 H 0.057 0.943 12 C -0.021 4.021 13 O -0.316 6.316 14 C -0.031 4.031 15 C 0.024 3.976 16 N -0.330 5.330 17 C -0.370 4.370 18 H 0.085 0.915 19 C -0.220 4.220 20 N -0.564 5.564 21 Si 0.765 3.235 22 H -0.221 1.221 23 H -0.211 1.211 24 H -0.217 1.217 25 C 0.079 3.921 26 C -0.157 4.157 27 N -0.250 5.250 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.193 0.807 32 H 0.247 0.753 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.026 0.974 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.262 -7.797 6.929 10.930 hybrid contribution -0.175 0.451 -1.376 1.458 sum -3.438 -7.346 5.554 9.830 Atomic orbital electron populations 1.20790 0.82389 1.05732 1.05228 1.24375 1.00259 0.82975 0.86466 1.68376 1.09704 1.30797 1.16918 1.23677 0.89929 0.98249 0.85560 1.21632 0.96163 0.96701 1.12486 1.17731 0.86012 0.84088 0.77042 1.90665 1.69874 1.31228 1.52434 1.45940 1.08000 1.09075 1.70821 1.21215 0.79052 0.96191 1.01697 1.21593 0.94754 0.92824 0.89000 0.94298 1.22993 0.92917 0.84253 1.01956 1.87815 1.75870 1.33361 1.34540 1.23126 0.96177 0.99809 0.84007 1.21128 0.90118 0.86985 0.99359 1.44242 1.46949 1.22493 1.19324 1.19147 1.06650 0.90519 1.20697 0.91544 1.25498 0.98434 0.96056 1.02000 1.70054 1.37985 1.06377 1.41963 0.85873 0.79243 0.77636 0.80732 1.22064 1.21074 1.21723 1.22343 0.89196 0.96268 0.84280 1.21016 0.99931 0.89766 1.04984 1.68330 1.08912 1.30326 1.17405 0.88132 0.87669 0.88189 0.80722 0.75284 0.92441 0.89341 0.86312 0.93103 0.87857 0.93837 0.91960 0.97402 0.93985 0.88244 0.89216 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.31 71.23 0.73 -0.85 16 2 C 0.32 9.47 7.64 138.70 1.06 10.53 16 3 N -0.54 -17.88 10.32 -186.79 -1.93 -19.80 16 4 C 0.19 6.53 10.80 85.07 0.92 7.45 16 5 C -0.26 -8.94 5.91 -19.91 -0.12 -9.06 16 6 C 0.57 20.02 7.72 86.78 0.67 20.69 16 7 O -0.56 -20.79 13.55 -3.89 -0.05 -20.84 16 8 N -0.69 -24.21 3.77 -465.98 -1.76 -25.97 16 9 C 0.14 4.69 4.45 86.38 0.38 5.07 16 10 C 0.12 4.40 3.21 44.96 0.14 4.55 16 11 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 12 C 0.06 1.76 6.29 72.08 0.45 2.21 16 13 O -0.40 -13.86 10.74 -148.98 -1.60 -15.46 16 14 C 0.05 1.65 6.97 71.94 0.50 2.15 16 15 C 0.15 6.54 5.34 86.21 0.46 7.00 16 16 N -0.60 -26.30 3.03 -674.55 -2.04 -28.34 16 17 C -0.24 -11.39 7.01 84.03 0.59 -10.80 16 18 H 0.07 3.21 5.89 -2.91 -0.02 3.20 16 19 C -0.02 -1.12 5.05 84.86 0.43 -0.69 16 20 N -0.92 -48.94 11.26 21.65 0.24 -48.70 16 21 Si 0.93 43.18 29.57 68.60 2.03 45.20 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 C 0.23 7.18 6.87 42.92 0.29 7.47 16 26 C -0.10 -2.68 8.97 71.24 0.64 -2.04 16 27 N -0.53 -16.25 10.26 -175.03 -1.80 -18.04 16 28 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.18 5.76 6.58 -2.91 -0.02 5.74 16 32 H 0.41 15.28 5.51 -92.71 -0.51 14.77 16 33 H 0.06 2.07 7.54 -2.39 -0.02 2.05 16 34 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 3.05 6.45 -2.38 -0.02 3.04 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 42 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 44 H 0.09 2.79 6.00 -2.39 -0.01 2.78 16 Total: -1.00 -60.81 354.31 0.78 -60.03 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.52 Total: 28.23 kcal Atomic # 6 Polarization: 36.54 SS G_CDS: 7.16 Total: 43.70 kcal Atomic # 7 Polarization: -133.58 SS G_CDS: -7.28 Total: -140.85 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.65 Total: -36.30 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -60.81 0.78 -60.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051172572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.044 kcal (2) G-P(sol) polarization free energy of solvation -60.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds