Wall clock time and date at job start Tue Mar 31 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00211 * 2 1 4 4 H 1.48499 * 109.46967 * 90.00114 * 3 2 1 5 5 H 1.48503 * 109.47150 * 209.99966 * 3 2 1 6 6 H 1.48501 * 109.47098 * 330.00113 * 3 2 1 7 7 C 1.38815 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99703 * 191.81368 * 7 2 1 9 9 N 1.36938 * 119.99829 * 11.81598 * 7 2 1 10 10 C 1.47147 * 120.98464 * 30.70461 * 9 7 2 11 11 C 1.53715 * 108.16067 * 129.43200 * 10 9 7 12 12 O 1.42966 * 109.14615 * 52.53883 * 11 10 9 13 13 C 1.42965 * 114.16558 * 297.28681 * 12 11 10 14 14 C 1.47158 * 120.97763 * 210.99084 * 9 7 2 15 15 H 1.08997 * 109.68343 * 110.78789 * 14 9 7 16 16 C 1.53001 * 109.68339 * 350.26772 * 14 9 7 17 17 N 1.46503 * 109.46606 * 60.46219 * 16 14 9 18 18 C 1.34782 * 119.99675 * 179.97438 * 17 16 14 19 19 O 1.21597 * 120.00225 * 0.02562 * 18 17 16 20 20 C 1.47434 * 119.99966 * 180.02562 * 18 17 16 21 21 C 1.38040 * 126.41063 * 359.69022 * 20 18 17 22 22 N 1.34259 * 107.41422 * 179.87387 * 21 20 18 23 23 H 0.97002 * 125.75709 * 180.11869 * 22 21 20 24 24 N 1.39938 * 108.49228 * 0.39534 * 22 21 20 25 25 C 1.30447 * 108.89723 * 359.74810 * 24 22 21 26 26 C 1.50691 * 125.99143 * 179.97438 * 25 24 22 27 27 C 1.53004 * 117.49943 * 8.62323 * 26 25 24 28 28 C 1.52993 * 60.00045 * 252.51061 * 27 26 25 29 29 H 0.96996 * 119.99227 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.68323 * 249.21273 * 10 9 7 31 31 H 1.08998 * 109.68254 * 9.76576 * 10 9 7 32 32 H 1.09001 * 109.65962 * 292.57249 * 11 10 9 33 33 H 1.09000 * 109.44111 * 172.37347 * 11 10 9 34 34 H 1.08994 * 109.51446 * 302.65899 * 13 12 11 35 35 H 1.09005 * 109.55263 * 182.52629 * 13 12 11 36 36 H 1.08993 * 109.47057 * 180.45877 * 16 14 9 37 37 H 1.08999 * 109.47357 * 300.46846 * 16 14 9 38 38 H 0.97000 * 120.00685 * 0.02562 * 17 16 14 39 39 H 1.08000 * 126.29857 * 0.02562 * 21 20 18 40 40 H 1.09004 * 115.55380 * 154.33604 * 26 25 24 41 41 H 1.09001 * 117.49526 * 0.02562 * 27 26 25 42 42 H 1.08998 * 117.49616 * 145.01958 * 27 26 25 43 43 H 1.09005 * 117.50127 * 252.50479 * 28 27 26 44 44 H 1.09009 * 117.49799 * 107.49105 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5479 1.4401 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0731 -1.2122 0.1909 9 7 1.3472 -2.3754 -0.2439 10 6 0.1653 -2.4100 -1.1198 11 6 0.3696 -3.5266 -2.1562 12 8 0.6921 -4.7429 -1.4776 13 6 1.9139 -4.6936 -0.7368 14 6 1.7920 -3.6378 0.3678 15 1 1.0620 -3.9639 1.1086 16 6 3.1517 -3.4341 1.0392 17 7 3.0324 -2.4141 2.0840 18 6 4.1113 -2.0678 2.8139 19 8 5.1836 -2.6016 2.6049 20 6 3.9912 -1.0417 3.8657 21 6 2.8468 -0.3504 4.2092 22 7 3.1667 0.4835 5.2116 23 1 2.5586 1.0942 5.6568 24 7 4.5268 0.3277 5.5016 25 6 5.0273 -0.5774 4.7067 26 6 6.4596 -1.0454 4.6882 27 6 7.3756 -0.5612 5.8140 28 6 7.5402 -0.0014 4.3997 29 1 -0.4849 0.8401 -0.0004 30 1 -0.7256 -2.6146 -0.5263 31 1 0.0566 -1.4517 -1.6276 32 1 1.1841 -3.2580 -2.8289 33 1 -0.5476 -3.6617 -2.7295 34 1 2.7339 -4.4293 -1.4043 35 1 2.1085 -5.6682 -0.2890 36 1 3.4815 -4.3729 1.4839 37 1 3.8791 -3.1090 0.2954 38 1 2.1769 -1.9885 2.2510 39 1 1.8725 -0.4617 3.7566 40 1 6.6198 -2.0540 4.3072 41 1 6.9421 0.0956 6.5682 42 1 8.1385 -1.2514 6.1740 43 1 8.4115 -0.3232 3.8292 44 1 7.2151 1.0240 4.2232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051192938.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:54 Heat of formation + Delta-G solvation = 48.142111 kcal Electronic energy + Delta-G solvation = -27997.173866 eV Core-core repulsion = 24146.064011 eV Total energy + Delta-G solvation = -3851.109854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24826 -38.99184 -38.06793 -36.94243 -35.27293 -33.55164 -31.72975 -31.24916 -30.59516 -29.79985 -27.22083 -25.53007 -23.87478 -23.48230 -22.69811 -22.25042 -21.57868 -19.76719 -19.56274 -19.14847 -18.21709 -16.77769 -15.90221 -15.87429 -15.58170 -15.47273 -14.86302 -14.74729 -14.59695 -14.47597 -14.20430 -13.85128 -13.48655 -13.43591 -13.06819 -12.76395 -12.56724 -11.88705 -11.78692 -11.56020 -11.46639 -11.10987 -11.02944 -10.91394 -10.83413 -10.75455 -10.43850 -10.30834 -10.27011 -10.07248 -9.68853 -9.36047 -9.16144 -8.97604 -8.72123 -8.61801 -8.15783 -6.77880 -5.96100 -3.44837 1.75023 2.28106 2.81367 3.21421 3.31458 3.37567 3.83003 3.93025 4.15174 4.30126 4.51070 4.53865 4.76604 5.10710 5.12589 5.13169 5.18903 5.21166 5.58329 5.61337 5.66252 5.71519 5.72787 5.80201 5.89562 5.92467 6.02130 6.12407 6.14682 6.21597 6.24627 6.29824 6.36372 6.50416 6.57021 6.75577 7.04108 7.15325 7.22892 7.44613 7.66502 7.67614 7.84630 8.23355 8.31709 8.92994 9.01209 9.61362 10.20552 11.09899 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.004594 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.455651 B = 6094.084809 C = 7204.772435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.009 3.991 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.592 5.592 10 C 0.144 3.856 11 C 0.034 3.966 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.138 3.862 17 N -0.694 5.694 18 C 0.588 3.412 19 O -0.562 6.562 20 C -0.275 4.275 21 C 0.113 3.887 22 N -0.465 5.465 23 H 0.442 0.558 24 N -0.306 5.306 25 C 0.161 3.839 26 C -0.076 4.076 27 C -0.171 4.171 28 C -0.161 4.161 29 H 0.255 0.745 30 H 0.030 0.970 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.411 0.589 39 H 0.190 0.810 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 -2.246 7.075 8.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.723 3.277 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.044 4.044 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.014 3.986 17 N -0.345 5.345 18 C 0.375 3.625 19 O -0.443 6.443 20 C -0.289 4.289 21 C -0.039 4.039 22 N -0.169 5.169 23 H 0.286 0.714 24 N -0.129 5.129 25 C -0.006 4.006 26 C -0.096 4.096 27 C -0.209 4.209 28 C -0.199 4.199 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.249 0.751 39 H 0.207 0.793 40 H 0.158 0.842 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.372 -1.834 7.842 9.681 hybrid contribution -0.692 1.383 -0.518 1.631 sum 4.680 -0.451 7.324 8.703 Atomic orbital electron populations 1.69996 1.05086 1.25566 1.53870 1.25094 0.95213 0.98029 1.00719 0.86433 0.79441 0.83913 0.77909 1.21396 1.20352 1.21596 1.19287 0.91691 0.83379 1.43616 0.90687 1.44127 1.32797 1.02646 1.52159 1.21491 0.88938 0.96948 0.90724 1.23424 0.99160 0.86371 0.95397 1.87801 1.41179 1.35612 1.66534 1.22866 0.86856 0.98773 0.93815 1.21442 0.93925 0.89195 0.93688 0.94130 1.21134 0.97411 0.90304 0.89781 1.45829 1.12495 1.41127 1.35077 1.17157 0.84019 0.81046 0.80306 1.90664 1.27549 1.55967 1.70123 1.20279 0.93355 1.08492 1.06817 1.23350 1.00406 0.90491 0.89645 1.46005 1.08831 1.33267 1.28794 0.71355 1.76990 0.89227 1.21911 1.24733 1.21386 0.94873 0.92435 0.91918 1.20494 0.84060 1.00576 1.04479 1.22995 1.02039 1.03813 0.92044 1.22943 0.99804 0.98414 0.98743 0.93531 0.95236 0.89025 0.94070 0.90306 0.93465 0.89883 0.92271 0.91486 0.75125 0.79276 0.84237 0.88305 0.88481 0.88162 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.11 11.16 55.49 0.62 -22.49 16 2 C 0.01 0.21 5.04 -17.43 -0.09 0.12 16 3 Si 0.89 20.37 29.57 -169.99 -5.03 15.34 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -5.95 7.06 -15.06 -0.11 -6.05 16 8 H 0.08 1.85 5.80 -52.49 -0.30 1.55 16 9 N -0.59 -13.07 3.03 -164.05 -0.50 -13.57 16 10 C 0.14 3.17 5.41 -3.32 -0.02 3.15 16 11 C 0.03 0.64 7.00 37.53 0.26 0.91 16 12 O -0.39 -7.44 10.74 -35.23 -0.38 -7.82 16 13 C 0.06 0.96 6.29 37.31 0.23 1.20 16 14 C 0.12 2.34 3.21 -67.42 -0.22 2.13 16 15 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 16 C 0.14 2.48 4.45 -4.04 -0.02 2.47 16 17 N -0.69 -12.74 3.75 -61.38 -0.23 -12.97 16 18 C 0.59 11.15 7.81 -12.51 -0.10 11.05 16 19 O -0.56 -11.74 15.00 5.28 0.08 -11.66 16 20 C -0.27 -4.74 6.13 -105.06 -0.64 -5.39 16 21 C 0.11 1.67 11.52 -16.56 -0.19 1.48 16 22 N -0.46 -6.16 7.29 30.85 0.22 -5.94 16 23 H 0.44 4.19 8.96 -182.72 -1.64 2.55 16 24 N -0.31 -4.77 12.22 33.89 0.41 -4.36 16 25 C 0.16 2.68 6.79 -82.02 -0.56 2.13 16 26 C -0.08 -1.14 5.65 -91.77 -0.52 -1.66 16 27 C -0.17 -2.06 10.14 -26.73 -0.27 -2.33 16 28 C -0.16 -2.09 10.23 -26.73 -0.27 -2.36 16 29 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.22 6.33 -51.93 -0.33 1.89 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.32 7.58 -51.93 -0.39 0.92 16 38 H 0.41 7.66 6.23 -40.82 -0.25 7.40 16 39 H 0.19 2.47 7.46 -52.49 -0.39 2.08 16 40 H 0.14 2.22 6.73 -51.93 -0.35 1.87 16 41 H 0.10 1.21 7.90 -51.93 -0.41 0.80 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -29.63 357.51 -9.34 -38.97 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -7.43 Total: 12.26 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -2.50 Total: 6.83 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.53 Total: -59.32 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.30 Total: -19.48 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.63 -9.34 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051192938.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.116 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds