Wall clock time and date at job start Tue Mar 31 2020 12:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00211 * 2 1 4 4 H 1.48499 * 109.46967 * 90.00114 * 3 2 1 5 5 H 1.48503 * 109.47150 * 209.99966 * 3 2 1 6 6 H 1.48501 * 109.47098 * 330.00113 * 3 2 1 7 7 C 1.38815 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99703 * 191.81368 * 7 2 1 9 9 N 1.36938 * 119.99829 * 11.81598 * 7 2 1 10 10 C 1.47147 * 120.98464 * 30.70461 * 9 7 2 11 11 C 1.53715 * 108.16067 * 129.43200 * 10 9 7 12 12 O 1.42966 * 109.14615 * 52.53883 * 11 10 9 13 13 C 1.42965 * 114.16558 * 297.28681 * 12 11 10 14 14 C 1.47158 * 120.97763 * 210.99084 * 9 7 2 15 15 H 1.08997 * 109.68343 * 110.78789 * 14 9 7 16 16 C 1.53001 * 109.68339 * 350.26772 * 14 9 7 17 17 N 1.46503 * 109.46606 * 60.46219 * 16 14 9 18 18 C 1.34782 * 119.99675 * 179.97438 * 17 16 14 19 19 O 1.21597 * 120.00225 * 0.02562 * 18 17 16 20 20 C 1.47434 * 119.99966 * 180.02562 * 18 17 16 21 21 C 1.38040 * 126.41063 * 359.69022 * 20 18 17 22 22 N 1.34259 * 107.41422 * 179.87387 * 21 20 18 23 23 H 0.97002 * 125.75709 * 180.11869 * 22 21 20 24 24 N 1.39938 * 108.49228 * 0.39534 * 22 21 20 25 25 C 1.30447 * 108.89723 * 359.74810 * 24 22 21 26 26 C 1.50691 * 125.99143 * 179.97438 * 25 24 22 27 27 C 1.53004 * 117.49943 * 8.62323 * 26 25 24 28 28 C 1.52993 * 60.00045 * 252.51061 * 27 26 25 29 29 H 0.96996 * 119.99227 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.68323 * 249.21273 * 10 9 7 31 31 H 1.08998 * 109.68254 * 9.76576 * 10 9 7 32 32 H 1.09001 * 109.65962 * 292.57249 * 11 10 9 33 33 H 1.09000 * 109.44111 * 172.37347 * 11 10 9 34 34 H 1.08994 * 109.51446 * 302.65899 * 13 12 11 35 35 H 1.09005 * 109.55263 * 182.52629 * 13 12 11 36 36 H 1.08993 * 109.47057 * 180.45877 * 16 14 9 37 37 H 1.08999 * 109.47357 * 300.46846 * 16 14 9 38 38 H 0.97000 * 120.00685 * 0.02562 * 17 16 14 39 39 H 1.08000 * 126.29857 * 0.02562 * 21 20 18 40 40 H 1.09004 * 115.55380 * 154.33604 * 26 25 24 41 41 H 1.09001 * 117.49526 * 0.02562 * 27 26 25 42 42 H 1.08998 * 117.49616 * 145.01958 * 27 26 25 43 43 H 1.09005 * 117.50127 * 252.50479 * 28 27 26 44 44 H 1.09009 * 117.49799 * 107.49105 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5479 1.4401 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0731 -1.2122 0.1909 9 7 1.3472 -2.3754 -0.2439 10 6 0.1653 -2.4100 -1.1198 11 6 0.3696 -3.5266 -2.1562 12 8 0.6921 -4.7429 -1.4776 13 6 1.9139 -4.6936 -0.7368 14 6 1.7920 -3.6378 0.3678 15 1 1.0620 -3.9639 1.1086 16 6 3.1517 -3.4341 1.0392 17 7 3.0324 -2.4141 2.0840 18 6 4.1113 -2.0678 2.8139 19 8 5.1836 -2.6016 2.6049 20 6 3.9912 -1.0417 3.8657 21 6 2.8468 -0.3504 4.2092 22 7 3.1667 0.4835 5.2116 23 1 2.5586 1.0942 5.6568 24 7 4.5268 0.3277 5.5016 25 6 5.0273 -0.5774 4.7067 26 6 6.4596 -1.0454 4.6882 27 6 7.3756 -0.5612 5.8140 28 6 7.5402 -0.0014 4.3997 29 1 -0.4849 0.8401 -0.0004 30 1 -0.7256 -2.6146 -0.5263 31 1 0.0566 -1.4517 -1.6276 32 1 1.1841 -3.2580 -2.8289 33 1 -0.5476 -3.6617 -2.7295 34 1 2.7339 -4.4293 -1.4043 35 1 2.1085 -5.6682 -0.2890 36 1 3.4815 -4.3729 1.4839 37 1 3.8791 -3.1090 0.2954 38 1 2.1769 -1.9885 2.2510 39 1 1.8725 -0.4617 3.7566 40 1 6.6198 -2.0540 4.3072 41 1 6.9421 0.0956 6.5682 42 1 8.1385 -1.2514 6.1740 43 1 8.4115 -0.3232 3.8292 44 1 7.2151 1.0240 4.2232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051192938.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:53 Heat of formation + Delta-G solvation = 28.699405 kcal Electronic energy + Delta-G solvation = -27998.016965 eV Core-core repulsion = 24146.064011 eV Total energy + Delta-G solvation = -3851.952953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.45636 -40.50898 -39.57075 -37.99615 -36.85311 -35.21856 -33.34126 -32.45104 -32.20896 -31.11913 -28.93732 -27.00331 -25.20612 -24.99805 -24.07826 -23.27332 -23.04339 -21.38317 -20.93396 -20.32749 -19.53930 -18.42776 -17.53101 -17.35164 -17.01563 -16.55487 -16.25603 -16.21253 -16.14406 -15.80873 -15.60600 -15.36480 -15.00753 -14.94723 -14.63459 -14.28507 -13.96213 -13.47329 -13.07593 -12.93329 -12.88940 -12.71191 -12.45557 -12.41351 -12.19383 -12.16600 -11.97050 -11.94293 -11.81434 -11.37847 -11.26025 -10.84368 -10.57459 -10.51601 -10.29312 -9.98606 -9.58910 -8.58890 -7.84827 -5.34153 0.52678 1.02147 1.37453 1.45390 1.51863 1.74190 2.39328 2.47985 2.56319 3.04795 3.07726 3.30782 3.38631 3.49022 3.62578 4.02566 4.04285 4.11140 4.16221 4.23426 4.32744 4.42199 4.45537 4.51259 4.65124 4.66470 4.69164 4.72588 4.76102 4.83207 4.95011 5.04972 5.16233 5.21589 5.27369 5.34582 5.36501 5.63547 5.70007 5.74751 6.19837 6.33033 6.40403 6.47721 6.83900 7.14168 7.46106 7.79487 8.35788 9.19101 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.004594 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.455651 B = 6094.084809 C = 7204.772435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 0.935 3.065 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.297 1.297 7 C -0.236 4.236 8 H 0.067 0.933 9 N -0.604 5.604 10 C 0.150 3.850 11 C 0.045 3.955 12 O -0.398 6.398 13 C 0.057 3.943 14 C 0.127 3.873 15 H 0.040 0.960 16 C 0.144 3.856 17 N -0.694 5.694 18 C 0.586 3.414 19 O -0.587 6.587 20 C -0.308 4.308 21 C 0.127 3.873 22 N -0.448 5.448 23 H 0.459 0.541 24 N -0.314 5.314 25 C 0.151 3.849 26 C -0.103 4.103 27 C -0.147 4.147 28 C -0.159 4.159 29 H 0.250 0.750 30 H 0.010 0.990 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.410 0.590 39 H 0.206 0.794 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.091 -2.761 7.740 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.220 4.220 3 Si 0.766 3.234 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.223 1.223 7 C -0.366 4.366 8 H 0.084 0.916 9 N -0.330 5.330 10 C 0.024 3.976 11 C -0.033 4.033 12 O -0.316 6.316 13 C -0.022 4.022 14 C 0.021 3.979 15 H 0.058 0.942 16 C 0.020 3.980 17 N -0.344 5.344 18 C 0.375 3.625 19 O -0.470 6.470 20 C -0.323 4.323 21 C -0.027 4.027 22 N -0.154 5.154 23 H 0.307 0.693 24 N -0.137 5.137 25 C -0.016 4.016 26 C -0.124 4.124 27 C -0.184 4.184 28 C -0.197 4.197 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.135 0.865 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.247 0.753 39 H 0.223 0.777 40 H 0.143 0.857 41 H 0.116 0.884 42 H 0.139 0.861 43 H 0.133 0.867 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.819 -2.345 8.532 10.590 hybrid contribution -0.830 1.518 -0.705 1.868 sum 4.989 -0.827 7.827 9.319 Atomic orbital electron populations 1.70087 1.05771 1.25447 1.55521 1.25417 0.95520 0.99515 1.01584 0.85783 0.77834 0.82050 0.77736 1.20820 1.21638 1.22336 1.19254 0.91267 0.84111 1.41953 0.91553 1.44308 1.32617 1.03347 1.52744 1.21319 0.88250 0.96959 0.91041 1.23298 1.00428 0.85207 0.94355 1.87806 1.41927 1.35259 1.66623 1.22991 0.86261 0.99821 0.93088 1.21554 0.93988 0.88166 0.94237 0.94244 1.21093 0.96427 0.91087 0.89418 1.45809 1.12303 1.41210 1.35051 1.17402 0.83598 0.81077 0.80452 1.90639 1.28333 1.56999 1.70991 1.20311 0.94819 1.09539 1.07598 1.23518 1.00291 0.89654 0.89256 1.46050 1.08489 1.32798 1.28076 0.69272 1.76950 0.90121 1.21876 1.24713 1.21660 0.95593 0.92527 0.91797 1.20492 0.84096 1.00431 1.07345 1.23059 1.00950 1.03191 0.91196 1.23010 0.99356 0.97428 0.99900 0.94046 0.97223 0.91628 0.93935 0.87894 0.93369 0.86462 0.90185 0.93284 0.75327 0.77740 0.85707 0.88396 0.86099 0.86722 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.61 11.16 21.65 0.24 -47.36 16 2 C -0.02 -1.16 5.04 84.86 0.43 -0.73 16 3 Si 0.94 41.94 29.57 68.60 2.03 43.97 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 7 C -0.24 -11.17 7.06 84.03 0.59 -10.58 16 8 H 0.07 3.28 5.80 -2.91 -0.02 3.26 16 9 N -0.60 -26.42 3.03 -672.92 -2.04 -28.46 16 10 C 0.15 6.54 5.41 86.50 0.47 7.01 16 11 C 0.04 1.61 7.00 72.22 0.51 2.12 16 12 O -0.40 -14.13 10.74 -148.98 -1.60 -15.73 16 13 C 0.06 1.82 6.29 72.08 0.45 2.27 16 14 C 0.13 4.60 3.21 44.97 0.14 4.75 16 15 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 16 C 0.14 5.05 4.45 86.38 0.38 5.43 16 17 N -0.69 -25.18 3.75 -466.37 -1.75 -26.93 16 18 C 0.59 22.23 7.81 86.67 0.68 22.91 16 19 O -0.59 -24.67 15.00 -4.02 -0.06 -24.73 16 20 C -0.31 -10.52 6.13 -20.15 -0.12 -10.64 16 21 C 0.13 3.59 11.52 84.27 0.97 4.56 16 22 N -0.45 -11.16 7.29 -56.32 -0.41 -11.57 16 23 H 0.46 7.74 8.96 -213.42 -1.91 5.83 16 24 N -0.31 -9.40 12.22 -46.68 -0.57 -9.97 16 25 C 0.15 4.96 6.79 43.51 0.30 5.25 16 26 C -0.10 -3.05 5.65 -11.54 -0.07 -3.11 16 27 C -0.15 -3.27 10.14 30.59 0.31 -2.96 16 28 C -0.16 -3.95 10.23 30.59 0.31 -3.63 16 29 H 0.25 12.76 8.31 -92.71 -0.77 11.99 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 31 H 0.07 3.21 6.33 -2.39 -0.02 3.19 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.05 1.91 7.58 -2.39 -0.02 1.89 16 38 H 0.41 15.09 6.23 -92.71 -0.58 14.51 16 39 H 0.21 5.06 7.46 -2.91 -0.02 5.04 16 40 H 0.13 4.02 6.73 -2.38 -0.02 4.00 16 41 H 0.10 2.22 7.90 -2.39 -0.02 2.20 16 42 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 44 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -62.94 357.51 -0.24 -63.19 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -1.44 Total: 34.98 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 5.35 Total: 22.63 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -4.52 Total: -124.30 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -1.66 Total: -40.47 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -62.94 -0.24 -63.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051192938.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.886 kcal (2) G-P(sol) polarization free energy of solvation -62.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds