Wall clock time and date at job start Tue Mar 31 2020 12:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00308 * 2 1 4 4 H 1.48499 * 109.46787 * 268.92063 * 3 2 1 5 5 H 1.48497 * 109.46924 * 28.91804 * 3 2 1 6 6 H 1.48497 * 109.47358 * 148.91914 * 3 2 1 7 7 C 1.38814 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00222 * 343.23541 * 7 2 1 9 9 N 1.36937 * 119.99900 * 163.23869 * 7 2 1 10 10 C 1.47164 * 120.99172 * 329.47642 * 9 7 2 11 11 C 1.53301 * 108.41373 * 230.54511 * 10 9 7 12 12 O 1.42961 * 109.21965 * 307.71847 * 11 10 9 13 13 C 1.42960 * 114.16944 * 62.58123 * 12 11 10 14 14 C 1.47154 * 120.98166 * 149.54841 * 9 7 2 15 15 H 1.08988 * 109.68690 * 249.19685 * 14 9 7 16 16 C 1.52997 * 109.68055 * 9.71804 * 14 9 7 17 17 N 1.46500 * 109.46973 * 298.57684 * 16 14 9 18 18 C 1.34779 * 120.00049 * 180.02562 * 17 16 14 19 19 O 1.21602 * 119.99884 * 359.97438 * 18 17 16 20 20 C 1.47430 * 120.00208 * 179.97438 * 18 17 16 21 21 C 1.38058 * 126.41066 * 359.97438 * 20 18 17 22 22 N 1.34256 * 107.41221 * 180.02562 * 21 20 18 23 23 H 0.96999 * 125.75005 * 179.97438 * 22 21 20 24 24 N 1.39933 * 108.49423 * 0.23756 * 22 21 20 25 25 C 1.30445 * 108.90106 * 359.58963 * 24 22 21 26 26 C 1.50697 * 125.99491 * 180.11464 * 25 24 22 27 27 C 1.53000 * 117.49661 * 9.08838 * 26 25 24 28 28 C 1.53004 * 117.49672 * 300.43060 * 26 25 24 29 29 H 0.96998 * 119.99493 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.65109 * 110.82443 * 10 9 7 31 31 H 1.08998 * 109.68134 * 350.28760 * 10 9 7 32 32 H 1.08994 * 109.51060 * 187.79645 * 11 10 9 33 33 H 1.08999 * 109.50942 * 67.63758 * 11 10 9 34 34 H 1.09004 * 109.51668 * 177.49201 * 13 12 11 35 35 H 1.09007 * 109.55496 * 57.36501 * 13 12 11 36 36 H 1.09005 * 109.47447 * 178.57840 * 16 14 9 37 37 H 1.08994 * 109.47724 * 58.57804 * 16 14 9 38 38 H 0.97005 * 120.00199 * 359.97438 * 17 16 14 39 39 H 1.07996 * 126.28998 * 0.02562 * 21 20 18 40 40 H 1.08997 * 115.55125 * 154.75606 * 26 25 24 41 41 H 1.09003 * 117.49982 * 359.97438 * 27 26 25 42 42 H 1.08994 * 117.49941 * 145.02526 * 27 26 25 43 43 H 1.08998 * 117.49625 * 214.98089 * 28 26 25 44 44 H 1.09004 * 117.49483 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5206 2.0331 -1.3998 5 1 1.4365 2.6591 0.6770 6 1 3.5362 1.4468 0.7228 7 6 2.0102 -1.2022 0.0005 8 1 1.5046 -2.1176 0.2707 9 7 3.3359 -1.2276 -0.3415 10 6 3.8896 -0.2592 -1.3013 11 6 4.6756 -1.0301 -2.3681 12 8 5.6149 -1.8960 -1.7265 13 6 5.0174 -2.9003 -0.9030 14 6 4.2489 -2.2251 0.2388 15 1 4.9501 -1.7330 0.9126 16 6 3.4441 -3.2739 1.0090 17 7 2.7189 -2.6253 2.1043 18 6 1.9387 -3.3584 2.9231 19 8 1.8363 -4.5580 2.7524 20 6 1.2093 -2.7058 4.0257 21 6 1.2296 -1.3615 4.3393 22 7 0.4345 -1.1859 5.4068 23 1 0.2575 -0.3407 5.8486 24 7 -0.0909 -2.4285 5.7781 25 6 0.3591 -3.3392 4.9598 26 6 0.0348 -4.8101 5.0066 27 6 -1.0661 -5.2605 5.9689 28 6 0.3993 -5.5736 6.2814 29 1 -0.4849 0.8401 -0.0004 30 1 4.5546 0.4315 -0.7829 31 1 3.0782 0.2955 -1.7725 32 1 5.2075 -0.3261 -3.0080 33 1 3.9869 -1.6224 -2.9706 34 1 5.7953 -3.5418 -0.4889 35 1 4.3302 -3.5001 -1.4997 36 1 4.1213 -4.0248 1.4161 37 1 2.7330 -3.7527 0.3358 38 1 2.8008 -1.6684 2.2407 39 1 1.7832 -0.5926 3.8210 40 1 0.1233 -5.3414 4.0590 41 1 -1.5555 -4.4929 6.5684 42 1 -1.7016 -6.0884 5.6546 43 1 0.7273 -6.6074 6.1725 44 1 0.8740 -5.0120 7.0860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051192939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:57 Heat of formation + Delta-G solvation = 54.670308 kcal Electronic energy + Delta-G solvation = -27952.021209 eV Core-core repulsion = 24101.194438 eV Total energy + Delta-G solvation = -3850.826771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.18436 -39.15975 -38.17956 -36.89028 -35.40447 -33.63237 -31.84739 -31.25204 -31.12083 -29.83769 -27.54039 -25.58772 -23.81634 -23.48366 -22.80389 -22.24598 -21.87662 -19.96750 -19.56227 -19.09195 -18.17252 -16.86012 -16.09599 -15.92840 -15.71298 -15.43681 -15.08528 -14.86013 -14.71832 -14.46273 -14.42228 -14.00645 -13.68511 -13.51232 -13.13441 -12.68595 -12.58172 -12.12566 -11.90432 -11.76019 -11.57746 -11.43110 -11.16411 -10.97692 -10.81233 -10.76493 -10.58279 -10.38275 -10.21570 -9.85905 -9.68320 -9.47486 -9.15952 -9.09973 -8.73508 -8.56432 -8.15849 -7.06614 -6.08017 -3.51710 1.81405 2.34909 2.86794 3.15692 3.31885 3.33422 3.82358 3.98494 4.20813 4.28769 4.35407 4.56532 4.63746 4.81600 5.14715 5.15516 5.16731 5.24622 5.42654 5.50339 5.60078 5.68603 5.74209 5.74943 5.77799 5.87021 5.87814 5.90572 5.95965 6.07043 6.11697 6.24394 6.25399 6.32488 6.43297 6.48030 6.63041 6.72296 7.15661 7.28045 7.57518 7.72714 7.76921 8.20764 8.31351 8.75370 8.96485 9.53744 9.91097 11.05612 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.004412 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.388895 B = 6344.526525 C = 7568.986882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 0.877 3.123 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.099 0.901 9 N -0.606 5.606 10 C 0.090 3.910 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.128 3.872 15 H 0.046 0.954 16 C 0.139 3.861 17 N -0.695 5.695 18 C 0.593 3.407 19 O -0.561 6.561 20 C -0.270 4.270 21 C 0.115 3.885 22 N -0.464 5.464 23 H 0.441 0.559 24 N -0.306 5.306 25 C 0.162 3.838 26 C -0.075 4.075 27 C -0.171 4.171 28 C -0.161 4.161 29 H 0.263 0.737 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.407 0.593 39 H 0.186 0.814 40 H 0.140 0.860 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 -3.286 7.632 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.171 4.171 3 Si 0.707 3.293 4 H -0.214 1.214 5 H -0.233 1.233 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.117 0.883 9 N -0.333 5.333 10 C -0.035 4.035 11 C -0.032 4.032 12 O -0.307 6.307 13 C -0.025 4.025 14 C 0.021 3.979 15 H 0.063 0.937 16 C 0.015 3.985 17 N -0.345 5.345 18 C 0.380 3.620 19 O -0.442 6.442 20 C -0.284 4.284 21 C -0.038 4.038 22 N -0.169 5.169 23 H 0.286 0.714 24 N -0.128 5.128 25 C -0.005 4.005 26 C -0.095 4.095 27 C -0.209 4.209 28 C -0.200 4.200 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.243 0.757 39 H 0.203 0.797 40 H 0.158 0.842 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.332 -3.778 8.486 10.250 hybrid contribution 0.521 2.247 -0.657 2.399 sum 4.853 -1.531 7.829 9.337 Atomic orbital electron populations 1.69815 1.05558 1.26461 1.52347 1.25341 0.95105 0.97252 0.99381 0.87092 0.79564 0.84928 0.77701 1.21431 1.23264 1.19612 1.19068 0.82707 0.94872 1.42614 0.88320 1.44454 1.06443 1.35337 1.47085 1.22062 0.97271 0.92815 0.91339 1.23063 0.92136 0.93150 0.94871 1.87827 1.33437 1.45634 1.63788 1.22918 0.97226 0.89952 0.92399 1.21458 0.92056 0.90818 0.93534 0.93662 1.21105 0.94833 0.94123 0.88481 1.45709 1.47070 1.11989 1.29751 1.17108 0.78303 0.86014 0.80583 1.90665 1.65255 1.14556 1.73698 1.20226 1.11128 0.92581 1.04492 1.23221 0.93561 0.97750 0.89225 1.45968 1.36895 1.09342 1.24676 0.71435 1.76982 1.22903 0.88776 1.24180 1.21360 0.93269 0.94409 0.91464 1.20503 1.04107 0.87823 0.97082 1.23007 0.91564 1.03361 1.02935 1.22941 0.98215 1.00799 0.98020 0.92703 0.94871 0.90071 0.89803 0.92986 0.89341 0.92868 0.92046 0.91090 0.75668 0.79712 0.84217 0.88282 0.88449 0.88273 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.25 13.97 55.49 0.78 -24.48 16 2 C 0.03 0.75 5.28 -17.43 -0.09 0.66 16 3 Si 0.88 19.98 24.28 -169.99 -4.13 15.85 16 4 H -0.29 -6.49 6.54 56.52 0.37 -6.12 16 5 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -5.98 6.65 56.52 0.38 -5.61 16 7 C -0.26 -6.42 7.59 -15.06 -0.11 -6.53 16 8 H 0.10 2.66 5.98 -52.48 -0.31 2.34 16 9 N -0.61 -12.74 2.78 -164.29 -0.46 -13.19 16 10 C 0.09 1.81 4.38 -3.52 -0.02 1.79 16 11 C 0.05 0.79 6.99 37.31 0.26 1.05 16 12 O -0.39 -6.75 10.74 -35.23 -0.38 -7.12 16 13 C 0.05 0.86 6.29 37.31 0.23 1.09 16 14 C 0.13 2.26 3.20 -67.42 -0.22 2.04 16 15 H 0.05 0.79 8.14 -51.94 -0.42 0.37 16 16 C 0.14 2.44 4.44 -4.04 -0.02 2.42 16 17 N -0.69 -12.71 3.78 -61.38 -0.23 -12.94 16 18 C 0.59 11.47 7.81 -12.52 -0.10 11.37 16 19 O -0.56 -11.96 14.99 5.28 0.08 -11.88 16 20 C -0.27 -4.77 6.13 -105.06 -0.64 -5.41 16 21 C 0.11 1.71 11.52 -16.56 -0.19 1.52 16 22 N -0.46 -6.24 7.29 30.85 0.22 -6.02 16 23 H 0.44 4.22 8.96 -182.72 -1.64 2.58 16 24 N -0.31 -4.87 12.22 33.89 0.41 -4.46 16 25 C 0.16 2.77 6.79 -82.02 -0.56 2.22 16 26 C -0.08 -1.16 5.65 -91.77 -0.52 -1.68 16 27 C -0.17 -2.15 10.14 -26.69 -0.27 -2.42 16 28 C -0.16 -2.02 10.24 -26.69 -0.27 -2.29 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.03 0.67 6.82 -51.93 -0.35 0.32 16 31 H 0.08 1.75 4.89 -51.93 -0.25 1.50 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.41 7.52 -51.93 -0.39 1.02 16 38 H 0.41 7.38 6.31 -40.82 -0.26 7.12 16 39 H 0.19 2.36 7.46 -52.49 -0.39 1.97 16 40 H 0.14 2.37 6.73 -51.93 -0.35 2.02 16 41 H 0.10 1.27 7.90 -51.93 -0.41 0.86 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -31.48 350.97 -8.28 -39.76 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -7.36 Total: 13.38 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -2.51 Total: 5.82 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: 0.72 Total: -61.09 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.30 Total: -19.01 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.13 Total: 15.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.48 -8.28 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051192939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.431 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds