Wall clock time and date at job start Tue Mar 31 2020 12:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00308 * 2 1 4 4 H 1.48499 * 109.46787 * 268.92063 * 3 2 1 5 5 H 1.48497 * 109.46924 * 28.91804 * 3 2 1 6 6 H 1.48497 * 109.47358 * 148.91914 * 3 2 1 7 7 C 1.38814 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00222 * 343.23541 * 7 2 1 9 9 N 1.36937 * 119.99900 * 163.23869 * 7 2 1 10 10 C 1.47164 * 120.99172 * 329.47642 * 9 7 2 11 11 C 1.53301 * 108.41373 * 230.54511 * 10 9 7 12 12 O 1.42961 * 109.21965 * 307.71847 * 11 10 9 13 13 C 1.42960 * 114.16944 * 62.58123 * 12 11 10 14 14 C 1.47154 * 120.98166 * 149.54841 * 9 7 2 15 15 H 1.08988 * 109.68690 * 249.19685 * 14 9 7 16 16 C 1.52997 * 109.68055 * 9.71804 * 14 9 7 17 17 N 1.46500 * 109.46973 * 298.57684 * 16 14 9 18 18 C 1.34779 * 120.00049 * 180.02562 * 17 16 14 19 19 O 1.21602 * 119.99884 * 359.97438 * 18 17 16 20 20 C 1.47430 * 120.00208 * 179.97438 * 18 17 16 21 21 C 1.38058 * 126.41066 * 359.97438 * 20 18 17 22 22 N 1.34256 * 107.41221 * 180.02562 * 21 20 18 23 23 H 0.96999 * 125.75005 * 179.97438 * 22 21 20 24 24 N 1.39933 * 108.49423 * 0.23756 * 22 21 20 25 25 C 1.30445 * 108.90106 * 359.58963 * 24 22 21 26 26 C 1.50697 * 125.99491 * 180.11464 * 25 24 22 27 27 C 1.53000 * 117.49661 * 9.08838 * 26 25 24 28 28 C 1.53004 * 117.49672 * 300.43060 * 26 25 24 29 29 H 0.96998 * 119.99493 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.65109 * 110.82443 * 10 9 7 31 31 H 1.08998 * 109.68134 * 350.28760 * 10 9 7 32 32 H 1.08994 * 109.51060 * 187.79645 * 11 10 9 33 33 H 1.08999 * 109.50942 * 67.63758 * 11 10 9 34 34 H 1.09004 * 109.51668 * 177.49201 * 13 12 11 35 35 H 1.09007 * 109.55496 * 57.36501 * 13 12 11 36 36 H 1.09005 * 109.47447 * 178.57840 * 16 14 9 37 37 H 1.08994 * 109.47724 * 58.57804 * 16 14 9 38 38 H 0.97005 * 120.00199 * 359.97438 * 17 16 14 39 39 H 1.07996 * 126.28998 * 0.02562 * 21 20 18 40 40 H 1.08997 * 115.55125 * 154.75606 * 26 25 24 41 41 H 1.09003 * 117.49982 * 359.97438 * 27 26 25 42 42 H 1.08994 * 117.49941 * 145.02526 * 27 26 25 43 43 H 1.08998 * 117.49625 * 214.98089 * 28 26 25 44 44 H 1.09004 * 117.49483 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5206 2.0331 -1.3998 5 1 1.4365 2.6591 0.6770 6 1 3.5362 1.4468 0.7228 7 6 2.0102 -1.2022 0.0005 8 1 1.5046 -2.1176 0.2707 9 7 3.3359 -1.2276 -0.3415 10 6 3.8896 -0.2592 -1.3013 11 6 4.6756 -1.0301 -2.3681 12 8 5.6149 -1.8960 -1.7265 13 6 5.0174 -2.9003 -0.9030 14 6 4.2489 -2.2251 0.2388 15 1 4.9501 -1.7330 0.9126 16 6 3.4441 -3.2739 1.0090 17 7 2.7189 -2.6253 2.1043 18 6 1.9387 -3.3584 2.9231 19 8 1.8363 -4.5580 2.7524 20 6 1.2093 -2.7058 4.0257 21 6 1.2296 -1.3615 4.3393 22 7 0.4345 -1.1859 5.4068 23 1 0.2575 -0.3407 5.8486 24 7 -0.0909 -2.4285 5.7781 25 6 0.3591 -3.3392 4.9598 26 6 0.0348 -4.8101 5.0066 27 6 -1.0661 -5.2605 5.9689 28 6 0.3993 -5.5736 6.2814 29 1 -0.4849 0.8401 -0.0004 30 1 4.5546 0.4315 -0.7829 31 1 3.0782 0.2955 -1.7725 32 1 5.2075 -0.3261 -3.0080 33 1 3.9869 -1.6224 -2.9706 34 1 5.7953 -3.5418 -0.4889 35 1 4.3302 -3.5001 -1.4997 36 1 4.1213 -4.0248 1.4161 37 1 2.7330 -3.7527 0.3358 38 1 2.8008 -1.6684 2.2407 39 1 1.7832 -0.5926 3.8210 40 1 0.1233 -5.3414 4.0590 41 1 -1.5555 -4.4929 6.5684 42 1 -1.7016 -6.0884 5.6546 43 1 0.7273 -6.6074 6.1725 44 1 0.8740 -5.0120 7.0860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051192939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:56 Heat of formation + Delta-G solvation = 31.649444 kcal Electronic energy + Delta-G solvation = -27953.019468 eV Core-core repulsion = 24101.194438 eV Total energy + Delta-G solvation = -3851.825030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42120 -40.63260 -39.64539 -37.97258 -36.93359 -35.25493 -33.59247 -32.74325 -32.37135 -31.13635 -29.18145 -27.01016 -25.18132 -24.97496 -24.22205 -23.36851 -23.15707 -21.53350 -20.94427 -20.30648 -19.52067 -18.53519 -17.68219 -17.37343 -17.08793 -16.70006 -16.51525 -16.27482 -16.03210 -15.95216 -15.60736 -15.49340 -15.17726 -14.99389 -14.55032 -14.39359 -13.97656 -13.78421 -13.43245 -13.09308 -12.90606 -12.77883 -12.39842 -12.30606 -12.27549 -12.17035 -12.00024 -11.91881 -11.51401 -11.37369 -11.30023 -11.04663 -10.70763 -10.46473 -10.26005 -9.97372 -9.57934 -8.81543 -8.06286 -5.46707 0.56498 1.05429 1.34675 1.45132 1.53518 1.77242 2.38762 2.46603 2.60470 2.92152 3.06630 3.08075 3.27375 3.41187 3.63866 3.97971 4.04795 4.06207 4.13278 4.20407 4.25242 4.30607 4.41597 4.44114 4.46272 4.51291 4.66052 4.71047 4.74004 4.77599 4.81171 4.94723 4.96226 4.97741 5.23971 5.26722 5.28486 5.38812 5.69257 5.90883 6.22839 6.23499 6.26437 6.50380 6.82180 6.90737 7.47579 7.63225 8.04082 9.11015 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.004412 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.388895 B = 6344.526525 C = 7568.986882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.021 4.021 3 Si 0.936 3.064 4 H -0.284 1.284 5 H -0.316 1.316 6 H -0.255 1.255 7 C -0.233 4.233 8 H 0.065 0.935 9 N -0.619 5.619 10 C 0.085 3.915 11 C 0.052 3.948 12 O -0.390 6.390 13 C 0.056 3.944 14 C 0.130 3.870 15 H 0.060 0.940 16 C 0.143 3.857 17 N -0.693 5.693 18 C 0.588 3.412 19 O -0.589 6.589 20 C -0.307 4.307 21 C 0.129 3.871 22 N -0.447 5.447 23 H 0.459 0.541 24 N -0.314 5.314 25 C 0.151 3.849 26 C -0.108 4.108 27 C -0.156 4.156 28 C -0.144 4.144 29 H 0.258 0.742 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.124 0.876 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.407 0.593 39 H 0.207 0.793 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.202 -2.787 8.250 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.216 4.216 3 Si 0.766 3.234 4 H -0.212 1.212 5 H -0.246 1.246 6 H -0.179 1.179 7 C -0.362 4.362 8 H 0.083 0.917 9 N -0.346 5.346 10 C -0.040 4.040 11 C -0.026 4.026 12 O -0.308 6.308 13 C -0.023 4.023 14 C 0.024 3.976 15 H 0.078 0.922 16 C 0.019 3.981 17 N -0.342 5.342 18 C 0.377 3.623 19 O -0.472 6.472 20 C -0.322 4.322 21 C -0.025 4.025 22 N -0.153 5.153 23 H 0.307 0.693 24 N -0.137 5.137 25 C -0.016 4.016 26 C -0.128 4.128 27 C -0.193 4.193 28 C -0.182 4.182 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.065 0.935 34 H 0.142 0.858 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.244 0.756 39 H 0.223 0.777 40 H 0.135 0.865 41 H 0.115 0.885 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.485 -3.267 9.116 11.654 hybrid contribution -0.121 2.021 -0.865 2.202 sum 6.364 -1.246 8.251 10.494 Atomic orbital electron populations 1.69964 1.07374 1.26753 1.55641 1.25802 0.95385 1.00148 1.00258 0.86123 0.78650 0.80939 0.77681 1.21162 1.24558 1.17888 1.18797 0.84000 0.93362 1.40078 0.91705 1.44567 1.05827 1.36240 1.47938 1.22124 0.97027 0.92973 0.91884 1.23032 0.92197 0.93334 0.94033 1.87841 1.33429 1.45720 1.63804 1.23016 0.98051 0.89742 0.91450 1.21624 0.91569 0.90019 0.94388 0.92229 1.21095 0.94444 0.94575 0.87993 1.45682 1.46987 1.11904 1.29644 1.17407 0.78161 0.85824 0.80952 1.90633 1.66238 1.15737 1.74615 1.20300 1.12734 0.93998 1.05160 1.23455 0.92897 0.97183 0.88951 1.46005 1.35686 1.09615 1.24010 0.69276 1.76930 1.23183 0.89313 1.24309 1.21630 0.93167 0.95321 0.91467 1.20457 1.07524 0.87438 0.97392 1.23073 0.91662 1.03457 1.01093 1.23020 0.98082 1.01180 0.95919 0.93294 0.94187 0.91941 0.86730 0.93509 0.85792 0.93454 0.89738 0.94009 0.75618 0.77677 0.86521 0.88466 0.86600 0.86534 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.89 13.97 21.65 0.30 -54.59 16 2 C -0.02 -1.06 5.28 84.86 0.45 -0.61 16 3 Si 0.94 41.06 24.28 68.60 1.67 42.72 16 4 H -0.28 -12.25 6.54 99.48 0.65 -11.60 16 5 H -0.32 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.25 -10.35 6.65 99.48 0.66 -9.69 16 7 C -0.23 -11.40 7.59 84.03 0.64 -10.76 16 8 H 0.07 3.62 5.98 -2.91 -0.02 3.60 16 9 N -0.62 -25.23 2.78 -673.68 -1.88 -27.11 16 10 C 0.08 3.20 4.38 86.35 0.38 3.58 16 11 C 0.05 1.64 6.99 72.08 0.50 2.14 16 12 O -0.39 -12.19 10.74 -148.98 -1.60 -13.79 16 13 C 0.06 1.62 6.29 72.08 0.45 2.07 16 14 C 0.13 4.32 3.20 44.97 0.14 4.47 16 15 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 16 C 0.14 4.97 4.44 86.38 0.38 5.36 16 17 N -0.69 -25.47 3.78 -466.37 -1.76 -27.23 16 18 C 0.59 23.36 7.81 86.66 0.68 24.04 16 19 O -0.59 -26.08 14.99 -4.04 -0.06 -26.15 16 20 C -0.31 -11.02 6.13 -20.15 -0.12 -11.15 16 21 C 0.13 3.76 11.52 84.28 0.97 4.74 16 22 N -0.45 -11.54 7.29 -56.31 -0.41 -11.95 16 23 H 0.46 8.00 8.96 -213.43 -1.91 6.09 16 24 N -0.31 -9.86 12.22 -46.68 -0.57 -10.43 16 25 C 0.15 5.22 6.79 43.51 0.30 5.52 16 26 C -0.11 -3.39 5.65 -11.54 -0.07 -3.45 16 27 C -0.16 -3.78 10.14 30.62 0.31 -3.47 16 28 C -0.14 -3.46 10.24 30.62 0.31 -3.15 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.04 1.48 6.82 -2.38 -0.02 1.46 16 31 H 0.06 2.61 4.89 -2.39 -0.01 2.59 16 32 H 0.11 2.91 8.14 -2.39 -0.02 2.90 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.04 1.70 7.52 -2.39 -0.02 1.68 16 38 H 0.41 14.63 6.31 -92.70 -0.59 14.04 16 39 H 0.21 4.99 7.46 -2.91 -0.02 4.97 16 40 H 0.12 4.18 6.73 -2.39 -0.02 4.16 16 41 H 0.10 2.41 7.90 -2.39 -0.02 2.39 16 42 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.26 350.97 -0.53 -69.79 By element: Atomic # 1 Polarization: 40.97 SS G_CDS: -1.55 Total: 39.42 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 5.33 Total: 19.31 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -4.32 Total: -131.30 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.66 Total: -39.94 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.67 Total: 42.72 kcal Total: -69.26 -0.53 -69.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051192939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.437 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds