Wall clock time and date at job start Tue Mar 31 2020 12:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48504 * 109.47039 * 240.00238 * 3 2 1 5 5 H 1.48505 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47227 * 119.99862 * 3 2 1 7 7 C 1.38812 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00276 * 197.00436 * 7 2 1 9 9 N 1.36940 * 119.99445 * 16.99975 * 7 2 1 10 10 C 1.47081 * 120.88008 * 206.57802 * 9 7 2 11 11 C 1.53235 * 108.52102 * 231.21315 * 10 9 7 12 12 N 1.46899 * 109.33864 * 306.16630 * 11 10 9 13 13 C 1.46904 * 111.00128 * 187.25493 * 12 11 10 14 14 H 1.09005 * 110.88674 * 297.57660 * 13 12 11 15 15 C 1.55160 * 111.00197 * 173.65252 * 13 12 11 16 16 C 1.54325 * 102.93738 * 206.42566 * 15 13 12 17 17 N 1.47017 * 107.27641 * 22.19112 * 16 15 13 18 18 C 1.34774 * 125.65519 * 181.02048 * 17 16 15 19 19 O 1.21497 * 120.00513 * 180.02562 * 18 17 16 20 20 C 1.48341 * 119.99560 * 0.04613 * 18 17 16 21 21 C 1.42266 * 126.93433 * 179.97438 * 20 18 17 22 22 C 1.35319 * 103.91893 * 180.02562 * 21 20 18 23 23 O 1.34019 * 106.66734 * 359.97438 * 22 21 20 24 24 N 1.20904 * 111.84508 * 359.71085 * 23 22 21 25 25 C 1.47423 * 108.70195 * 1.06118 * 17 16 15 26 26 C 1.46905 * 111.26693 * 63.10788 * 12 11 10 27 27 C 1.47074 * 120.88099 * 26.60929 * 9 7 2 28 28 H 0.97000 * 119.99781 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.62622 * 111.50063 * 10 9 7 30 30 H 1.09003 * 109.62424 * 350.91888 * 10 9 7 31 31 H 1.09004 * 109.49447 * 186.21224 * 11 10 9 32 32 H 1.08998 * 109.52055 * 66.13924 * 11 10 9 33 33 H 1.08993 * 110.72344 * 324.78525 * 15 13 12 34 34 H 1.08994 * 110.71893 * 88.06644 * 15 13 12 35 35 H 1.09001 * 109.88200 * 262.77633 * 16 15 13 36 36 H 1.09003 * 110.01355 * 141.68544 * 16 15 13 37 37 H 1.07999 * 128.04755 * 359.97438 * 21 20 18 38 38 H 1.08006 * 126.66872 * 180.02562 * 22 21 20 39 39 H 1.08996 * 110.36945 * 217.03317 * 25 17 16 40 40 H 1.09001 * 110.36906 * 94.70914 * 25 17 16 41 41 H 1.08999 * 109.49350 * 56.85742 * 26 12 11 42 42 H 1.09002 * 109.49168 * 176.93084 * 26 12 11 43 43 H 1.09010 * 109.62596 * 248.49763 * 27 9 7 44 44 H 1.09001 * 109.63291 * 9.07099 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0550 -1.2224 0.2741 9 7 1.3705 -2.3623 -0.3457 10 6 1.8312 -3.6609 0.1688 11 6 2.0033 -4.6197 -1.0139 12 7 0.7560 -4.6656 -1.7885 13 6 0.8202 -5.7006 -2.8291 14 1 1.6117 -5.4822 -3.5461 15 6 -0.5489 -5.8583 -3.5418 16 6 -0.5149 -7.3199 -4.0361 17 7 0.4593 -8.0399 -3.2030 18 6 0.7937 -9.3392 -3.3307 19 8 1.6149 -9.8315 -2.5827 20 6 0.1595 -10.1681 -4.3848 21 6 0.4008 -11.5448 -4.6504 22 6 -0.4136 -11.8223 -5.6948 23 8 -1.0613 -10.6867 -5.9897 24 7 -0.7401 -9.7819 -5.2549 25 6 1.0092 -7.1054 -2.2042 26 6 0.4411 -3.3537 -2.3696 27 6 0.2050 -2.3428 -1.2424 28 1 -0.4850 0.8401 -0.0004 29 1 1.0922 -4.0631 0.8618 30 1 2.7857 -3.5345 0.6797 31 1 2.2375 -5.6174 -0.6423 32 1 2.8148 -4.2694 -1.6517 33 1 -1.3689 -5.7077 -2.8397 34 1 -0.6279 -5.1688 -4.3822 35 1 -0.2041 -7.3509 -5.0804 36 1 -1.5005 -7.7729 -3.9292 37 1 1.0774 -12.2129 -4.1383 38 1 -0.5215 -12.7744 -6.1934 39 1 2.0673 -7.3073 -2.0378 40 1 0.4559 -7.1817 -1.2682 41 1 1.2742 -3.0204 -2.9884 42 1 -0.4577 -3.4331 -2.9813 43 1 -0.6904 -2.6184 -0.6851 44 1 0.0842 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051989424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:02 Heat of formation + Delta-G solvation = 80.506151 kcal Electronic energy + Delta-G solvation = -27066.059078 eV Core-core repulsion = 23216.352633 eV Total energy + Delta-G solvation = -3849.706444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.46308 -40.27770 -38.54660 -36.86513 -34.46485 -34.10429 -32.33960 -31.61328 -30.39144 -30.14163 -28.59214 -26.37151 -24.96225 -23.58991 -23.18993 -22.83688 -22.00050 -20.49917 -19.99982 -19.16015 -18.19398 -18.13313 -17.31836 -17.06925 -16.25703 -15.73138 -15.02976 -14.88694 -14.53159 -14.24711 -14.06830 -13.95138 -13.71305 -13.48418 -13.37249 -13.20480 -12.88384 -12.70013 -12.45696 -12.07874 -11.76270 -11.29765 -11.23005 -11.05405 -10.92639 -10.80624 -10.73281 -10.50945 -10.45989 -10.30436 -10.18053 -10.05544 -9.73708 -9.61742 -8.89018 -8.51152 -7.92336 -6.67513 -5.78617 -3.19619 0.78557 1.31588 2.44960 2.77738 2.87663 3.38274 3.43973 3.45113 3.54793 4.11442 4.20235 4.49408 4.51443 4.59284 4.62598 4.84873 4.99257 5.01045 5.20395 5.28495 5.38982 5.43841 5.45092 5.52196 5.68845 5.78929 5.82539 5.87455 5.93247 5.98689 6.12447 6.15669 6.24335 6.31661 6.51597 6.67111 6.91814 7.14135 7.22488 7.52765 7.55697 7.61013 7.67319 7.80199 7.81143 8.43045 9.20917 9.84176 10.42507 11.30277 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038935 B = 0.002420 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.978897 B =11566.149495 C =12037.854909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.041 3.959 12 N -0.520 5.520 13 C 0.069 3.931 14 H 0.052 0.948 15 C -0.123 4.123 16 C 0.107 3.893 17 N -0.601 5.601 18 C 0.610 3.390 19 O -0.525 6.525 20 C -0.023 4.023 21 C -0.185 4.185 22 C -0.060 4.060 23 O 0.120 5.880 24 N -0.327 5.327 25 C 0.117 3.883 26 C 0.036 3.964 27 C 0.178 3.822 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.181 0.819 38 H 0.225 0.775 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 -22.092 -13.157 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.023 3.977 11 C -0.089 4.089 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.070 0.930 15 C -0.161 4.161 16 C -0.016 4.016 17 N -0.335 5.335 18 C 0.396 3.604 19 O -0.400 6.400 20 C -0.182 4.182 21 C -0.207 4.207 22 C -0.140 4.140 23 O 0.045 5.955 24 N -0.028 5.028 25 C -0.005 4.005 26 C -0.093 4.093 27 C 0.052 3.948 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.199 0.801 38 H 0.241 0.759 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.190 -21.165 -12.587 24.830 hybrid contribution 1.539 0.311 -0.367 1.612 sum -1.651 -20.853 -12.954 24.605 Atomic orbital electron populations 1.70016 1.05180 1.25584 1.54049 1.25021 0.95318 0.98341 1.01056 0.86365 0.78889 0.83384 0.78092 1.21141 1.21617 1.20889 1.19153 0.92563 0.84784 1.41656 0.91695 1.44120 1.34152 1.01269 1.52344 1.20971 0.97864 0.86407 0.92502 1.22688 0.89505 0.99639 0.97023 1.62031 1.34434 1.05530 1.22571 1.22749 0.96599 0.91474 0.93275 0.93048 1.22731 0.98502 0.94023 1.00887 1.22165 0.92488 0.92264 0.94696 1.48255 1.42087 1.08543 1.34600 1.16447 0.81562 0.80097 0.82339 1.90817 1.33593 1.71531 1.44074 1.23530 0.99731 0.95163 0.99812 1.22786 1.03665 0.94653 0.99596 1.26064 0.95887 0.92977 0.99113 1.84819 1.51350 1.14985 1.44389 1.74306 1.13328 1.11704 1.03418 1.22335 0.99788 0.86804 0.91584 1.22925 0.98777 0.88802 0.98767 1.20870 0.89004 0.96519 0.88377 0.93566 0.95566 0.92548 0.91844 0.95254 0.88998 0.89886 0.91011 0.90723 0.80131 0.75890 0.90248 0.89586 0.95616 0.91835 0.95505 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.15 55.49 0.62 -25.50 16 2 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 3 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.93 9.63 -15.06 -0.15 -7.07 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.60 -15.00 3.04 -172.02 -0.52 -15.52 16 10 C 0.15 3.16 6.69 -3.60 -0.02 3.14 16 11 C 0.04 0.72 5.48 -3.70 -0.02 0.70 16 12 N -0.52 -8.86 4.53 -223.77 -1.01 -9.87 16 13 C 0.07 0.96 2.72 -65.56 -0.18 0.78 16 14 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.12 -1.45 5.34 -24.89 -0.13 -1.58 16 16 C 0.11 1.20 5.56 -3.07 -0.02 1.18 16 17 N -0.60 -7.92 3.33 -171.45 -0.57 -8.49 16 18 C 0.61 8.50 7.88 -12.10 -0.10 8.40 16 19 O -0.53 -8.67 17.21 5.37 0.09 -8.58 16 20 C -0.02 -0.26 7.03 -82.53 -0.58 -0.84 16 21 C -0.18 -1.46 10.99 -39.08 -0.43 -1.89 16 22 C -0.06 -0.30 12.28 29.69 0.36 0.07 16 23 O 0.12 0.94 11.18 17.24 0.19 1.13 16 24 N -0.33 -3.40 9.73 33.29 0.32 -3.07 16 25 C 0.12 1.60 5.31 -2.53 -0.01 1.59 16 26 C 0.04 0.68 5.48 -3.70 -0.02 0.66 16 27 C 0.18 4.23 5.42 -3.61 -0.02 4.21 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 31 H 0.06 0.98 6.79 -51.93 -0.35 0.63 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 35 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 36 H 0.07 0.81 7.78 -51.93 -0.40 0.41 16 37 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.22 -0.01 8.06 -52.48 -0.42 -0.43 16 39 H 0.08 1.12 7.74 -51.93 -0.40 0.72 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.05 6.87 -51.93 -0.36 0.70 16 43 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.09 2.34 6.12 -51.93 -0.32 2.02 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -32.60 353.99 -8.38 -40.98 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.41 Total: -2.34 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -1.40 Total: 9.29 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -1.16 Total: -62.46 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.29 Total: -7.45 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.60 -8.38 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051989424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.490 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds