Wall clock time and date at job start Tue Mar 31 2020 12:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48504 * 109.47039 * 240.00238 * 3 2 1 5 5 H 1.48505 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47227 * 119.99862 * 3 2 1 7 7 C 1.38812 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00276 * 197.00436 * 7 2 1 9 9 N 1.36940 * 119.99445 * 16.99975 * 7 2 1 10 10 C 1.47081 * 120.88008 * 206.57802 * 9 7 2 11 11 C 1.53235 * 108.52102 * 231.21315 * 10 9 7 12 12 N 1.46899 * 109.33864 * 306.16630 * 11 10 9 13 13 C 1.46904 * 111.00128 * 187.25493 * 12 11 10 14 14 H 1.09005 * 110.88674 * 297.57660 * 13 12 11 15 15 C 1.55160 * 111.00197 * 173.65252 * 13 12 11 16 16 C 1.54325 * 102.93738 * 206.42566 * 15 13 12 17 17 N 1.47017 * 107.27641 * 22.19112 * 16 15 13 18 18 C 1.34774 * 125.65519 * 181.02048 * 17 16 15 19 19 O 1.21497 * 120.00513 * 180.02562 * 18 17 16 20 20 C 1.48341 * 119.99560 * 0.04613 * 18 17 16 21 21 C 1.42266 * 126.93433 * 179.97438 * 20 18 17 22 22 C 1.35319 * 103.91893 * 180.02562 * 21 20 18 23 23 O 1.34019 * 106.66734 * 359.97438 * 22 21 20 24 24 N 1.20904 * 111.84508 * 359.71085 * 23 22 21 25 25 C 1.47423 * 108.70195 * 1.06118 * 17 16 15 26 26 C 1.46905 * 111.26693 * 63.10788 * 12 11 10 27 27 C 1.47074 * 120.88099 * 26.60929 * 9 7 2 28 28 H 0.97000 * 119.99781 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.62622 * 111.50063 * 10 9 7 30 30 H 1.09003 * 109.62424 * 350.91888 * 10 9 7 31 31 H 1.09004 * 109.49447 * 186.21224 * 11 10 9 32 32 H 1.08998 * 109.52055 * 66.13924 * 11 10 9 33 33 H 1.08993 * 110.72344 * 324.78525 * 15 13 12 34 34 H 1.08994 * 110.71893 * 88.06644 * 15 13 12 35 35 H 1.09001 * 109.88200 * 262.77633 * 16 15 13 36 36 H 1.09003 * 110.01355 * 141.68544 * 16 15 13 37 37 H 1.07999 * 128.04755 * 359.97438 * 21 20 18 38 38 H 1.08006 * 126.66872 * 180.02562 * 22 21 20 39 39 H 1.08996 * 110.36945 * 217.03317 * 25 17 16 40 40 H 1.09001 * 110.36906 * 94.70914 * 25 17 16 41 41 H 1.08999 * 109.49350 * 56.85742 * 26 12 11 42 42 H 1.09002 * 109.49168 * 176.93084 * 26 12 11 43 43 H 1.09010 * 109.62596 * 248.49763 * 27 9 7 44 44 H 1.09001 * 109.63291 * 9.07099 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0550 -1.2224 0.2741 9 7 1.3705 -2.3623 -0.3457 10 6 1.8312 -3.6609 0.1688 11 6 2.0033 -4.6197 -1.0139 12 7 0.7560 -4.6656 -1.7885 13 6 0.8202 -5.7006 -2.8291 14 1 1.6117 -5.4822 -3.5461 15 6 -0.5489 -5.8583 -3.5418 16 6 -0.5149 -7.3199 -4.0361 17 7 0.4593 -8.0399 -3.2030 18 6 0.7937 -9.3392 -3.3307 19 8 1.6149 -9.8315 -2.5827 20 6 0.1595 -10.1681 -4.3848 21 6 0.4008 -11.5448 -4.6504 22 6 -0.4136 -11.8223 -5.6948 23 8 -1.0613 -10.6867 -5.9897 24 7 -0.7401 -9.7819 -5.2549 25 6 1.0092 -7.1054 -2.2042 26 6 0.4411 -3.3537 -2.3696 27 6 0.2050 -2.3428 -1.2424 28 1 -0.4850 0.8401 -0.0004 29 1 1.0922 -4.0631 0.8618 30 1 2.7857 -3.5345 0.6797 31 1 2.2375 -5.6174 -0.6423 32 1 2.8148 -4.2694 -1.6517 33 1 -1.3689 -5.7077 -2.8397 34 1 -0.6279 -5.1688 -4.3822 35 1 -0.2041 -7.3509 -5.0804 36 1 -1.5005 -7.7729 -3.9292 37 1 1.0774 -12.2129 -4.1383 38 1 -0.5215 -12.7744 -6.1934 39 1 2.0673 -7.3073 -2.0378 40 1 0.4559 -7.1817 -1.2682 41 1 1.2742 -3.0204 -2.9884 42 1 -0.4577 -3.4331 -2.9813 43 1 -0.6904 -2.6184 -0.6851 44 1 0.0842 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051989424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:01 Heat of formation + Delta-G solvation = 57.923975 kcal Electronic energy + Delta-G solvation = -27067.038314 eV Core-core repulsion = 23216.352633 eV Total energy + Delta-G solvation = -3850.685681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.12023 -41.36197 -39.88815 -38.23773 -35.91907 -35.01923 -33.49473 -32.81644 -31.86955 -31.59609 -29.85132 -27.98228 -26.14145 -24.76363 -24.53514 -23.98861 -23.20369 -21.71133 -20.89408 -20.80166 -18.98221 -18.87608 -18.76714 -18.16116 -17.62539 -16.86647 -16.71625 -16.09629 -15.79954 -15.60038 -15.31608 -15.23552 -15.06598 -14.93760 -14.67559 -14.24870 -14.04845 -13.95630 -13.74885 -13.35838 -12.99983 -12.88422 -12.65527 -12.55883 -12.49807 -12.21056 -12.04309 -11.96756 -11.85353 -11.61161 -11.53683 -11.47122 -11.36874 -10.71260 -10.58384 -9.94169 -9.36599 -8.69241 -7.88188 -5.32595 0.04899 0.77869 1.46548 1.48371 1.50745 1.55572 1.93838 2.30376 2.50355 2.73752 2.90762 3.27011 3.30193 3.55540 3.65286 3.67794 3.97066 3.98619 4.13028 4.19778 4.24358 4.30126 4.33653 4.48774 4.55531 4.58809 4.64764 4.66518 4.71342 4.80097 4.85821 4.90913 4.96702 4.99350 5.06283 5.15157 5.18278 5.36481 5.60554 5.69126 6.07434 6.15831 6.19397 6.36978 6.67393 7.06931 7.13170 7.83353 8.37323 9.18524 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038935 B = 0.002420 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.978897 B =11566.149495 C =12037.854909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.615 5.615 10 C 0.145 3.855 11 C 0.053 3.947 12 N -0.526 5.526 13 C 0.073 3.927 14 H 0.054 0.946 15 C -0.116 4.116 16 C 0.115 3.885 17 N -0.604 5.604 18 C 0.605 3.395 19 O -0.562 6.562 20 C -0.055 4.055 21 C -0.205 4.205 22 C -0.023 4.023 23 O 0.129 5.871 24 N -0.343 5.343 25 C 0.121 3.879 26 C 0.054 3.946 27 C 0.185 3.815 28 H 0.251 0.749 29 H 0.017 0.983 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.025 0.975 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.190 0.810 38 H 0.279 0.721 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.020 0.980 42 H 0.090 0.910 43 H 0.000 1.000 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 -24.006 -15.302 28.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.395 4.395 8 H 0.083 0.917 9 N -0.339 5.339 10 C 0.020 3.980 11 C -0.076 4.076 12 N -0.251 5.251 13 C -0.036 4.036 14 H 0.072 0.928 15 C -0.154 4.154 16 C -0.007 4.007 17 N -0.337 5.337 18 C 0.392 3.608 19 O -0.440 6.440 20 C -0.212 4.212 21 C -0.228 4.228 22 C -0.103 4.103 23 O 0.050 5.950 24 N -0.042 5.042 25 C -0.001 4.001 26 C -0.075 4.075 27 C 0.059 3.941 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.207 0.793 38 H 0.295 0.705 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.038 0.962 42 H 0.108 0.892 43 H 0.019 0.981 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.243 -23.083 -14.735 27.577 hybrid contribution 1.519 0.772 0.290 1.729 sum -1.724 -22.311 -14.446 26.635 Atomic orbital electron populations 1.70174 1.06551 1.25968 1.55318 1.25782 0.96108 1.01420 1.01283 0.85331 0.77554 0.79218 0.78258 1.20503 1.21865 1.20224 1.19478 0.92848 0.85999 1.41198 0.91653 1.44411 1.34336 1.02050 1.53097 1.21097 0.97485 0.85553 0.93904 1.22494 0.89672 0.99786 0.95682 1.61932 1.34141 1.05292 1.23732 1.22714 0.98165 0.90267 0.92448 0.92769 1.22725 0.96781 0.94807 1.01117 1.22170 0.92347 0.91488 0.94698 1.48339 1.42240 1.08568 1.34557 1.16869 0.81125 0.80240 0.82529 1.90779 1.35284 1.72268 1.45657 1.23406 1.01192 0.96406 1.00227 1.23046 1.05167 0.93473 1.01097 1.26965 0.92846 0.93237 0.97211 1.84784 1.51036 1.15635 1.43502 1.74300 1.13392 1.12871 1.03659 1.22185 0.99407 0.86919 0.91625 1.22589 0.99771 0.88427 0.96695 1.20648 0.87787 0.96439 0.89212 0.93997 0.96483 0.92243 0.89349 0.95693 0.89399 0.88160 0.90179 0.90126 0.79299 0.70546 0.90843 0.90344 0.96184 0.89215 0.98140 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 11.15 21.65 0.24 -55.22 16 2 C -0.05 -2.84 4.94 84.86 0.42 -2.42 16 3 Si 0.97 45.11 29.59 68.60 2.03 47.14 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.27 -14.81 9.63 84.03 0.81 -14.00 16 8 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 9 N -0.61 -31.60 3.04 -698.15 -2.12 -33.72 16 10 C 0.15 6.22 6.69 86.35 0.58 6.79 16 11 C 0.05 1.84 5.48 86.38 0.47 2.31 16 12 N -0.53 -17.45 4.53 -861.88 -3.90 -21.36 16 13 C 0.07 1.94 2.72 46.31 0.13 2.06 16 14 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 15 C -0.12 -2.51 5.34 31.78 0.17 -2.34 16 16 C 0.12 2.40 5.56 86.73 0.48 2.88 16 17 N -0.60 -15.47 3.33 -814.64 -2.71 -18.18 16 18 C 0.60 16.73 7.88 86.93 0.68 17.42 16 19 O -0.56 -18.84 17.21 -3.70 -0.06 -18.90 16 20 C -0.06 -1.18 7.03 42.96 0.30 -0.88 16 21 C -0.20 -2.80 10.99 22.60 0.25 -2.55 16 22 C -0.02 -0.14 12.28 67.15 0.82 0.69 16 23 O 0.13 1.62 11.18 71.85 0.80 2.42 16 24 N -0.34 -6.48 9.73 -49.52 -0.48 -6.96 16 25 C 0.12 3.24 5.31 86.86 0.46 3.70 16 26 C 0.05 2.00 5.48 86.38 0.47 2.48 16 27 C 0.19 8.99 5.42 86.35 0.47 9.46 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 2.45 7.95 -2.39 -0.02 2.43 16 31 H 0.09 2.64 6.79 -2.38 -0.02 2.62 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.10 1.85 7.94 -2.39 -0.02 1.84 16 35 H 0.08 1.57 7.69 -2.39 -0.02 1.55 16 36 H 0.08 1.61 7.78 -2.39 -0.02 1.59 16 37 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.28 -1.69 8.06 -2.91 -0.02 -1.71 16 39 H 0.07 2.05 7.74 -2.39 -0.02 2.03 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 2.84 6.87 -2.39 -0.02 2.82 16 43 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 44 H 0.06 3.20 6.12 -2.39 -0.01 3.19 16 Total: -1.00 -73.46 353.99 1.32 -72.14 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.00 Total: 7.04 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 6.52 Total: 25.60 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -8.97 Total: -135.43 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.74 Total: -16.49 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.46 1.32 -72.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051989424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.060 kcal (2) G-P(sol) polarization free energy of solvation -73.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds