Wall clock time and date at job start Tue Mar 31 2020 12:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00010 * 2 1 4 4 H 1.48496 * 109.46943 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46799 * 299.99444 * 3 2 1 6 6 H 1.48497 * 109.46972 * 59.99598 * 3 2 1 7 7 C 1.38816 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00212 * 193.34864 * 7 2 1 9 9 N 1.36934 * 119.99563 * 13.35364 * 7 2 1 10 10 C 1.47079 * 120.88082 * 209.20249 * 9 7 2 11 11 C 1.53246 * 108.52009 * 231.16440 * 10 9 7 12 12 N 1.46898 * 109.33963 * 306.16589 * 11 10 9 13 13 C 1.46898 * 110.99912 * 187.25519 * 12 11 10 14 14 H 1.09001 * 110.88375 * 298.17177 * 13 12 11 15 15 C 1.55155 * 111.00363 * 62.10050 * 13 12 11 16 16 C 1.54339 * 103.02061 * 153.38394 * 15 13 12 17 17 N 1.47022 * 107.26259 * 338.13470 * 16 15 13 18 18 C 1.34779 * 125.64740 * 178.85007 * 17 16 15 19 19 O 1.21497 * 119.99883 * 179.69412 * 18 17 16 20 20 C 1.48329 * 120.00087 * 359.42282 * 18 17 16 21 21 C 1.42273 * 126.93971 * 180.27277 * 20 18 17 22 22 C 1.35315 * 103.91997 * 180.02562 * 21 20 18 23 23 O 1.34014 * 106.66989 * 359.97438 * 22 21 20 24 24 N 1.20907 * 111.84682 * 359.71361 * 23 22 21 25 25 C 1.47424 * 108.70396 * 358.59107 * 17 16 15 26 26 C 1.46896 * 111.26617 * 63.10453 * 12 11 10 27 27 C 1.47078 * 120.88602 * 29.17643 * 9 7 2 28 28 H 0.97002 * 119.99989 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.63514 * 111.45106 * 10 9 7 30 30 H 1.08998 * 109.78767 * 350.96380 * 10 9 7 31 31 H 1.09003 * 109.49156 * 186.20585 * 11 10 9 32 32 H 1.08996 * 109.49076 * 66.12585 * 11 10 9 33 33 H 1.08999 * 110.71736 * 271.93480 * 15 13 12 34 34 H 1.08998 * 110.72209 * 35.21268 * 15 13 12 35 35 H 1.09005 * 109.99027 * 218.66602 * 16 15 13 36 36 H 1.08998 * 109.78402 * 97.48989 * 16 15 13 37 37 H 1.08003 * 128.03707 * 0.03406 * 21 20 18 38 38 H 1.08003 * 126.66147 * 179.97438 * 22 21 20 39 39 H 1.09002 * 110.36770 * 143.19417 * 25 17 16 40 40 H 1.09004 * 110.36346 * 265.40367 * 25 17 16 41 41 H 1.08999 * 109.49584 * 56.85799 * 26 12 11 42 42 H 1.09004 * 109.49129 * 176.93571 * 26 12 11 43 43 H 1.08995 * 109.63401 * 248.54560 * 27 9 7 44 44 H 1.09004 * 109.62759 * 8.93211 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0684 -1.2147 0.2165 9 7 1.3534 -2.3721 -0.2728 10 6 1.8093 -3.6463 0.3032 11 6 1.9513 -4.6692 -0.8291 12 7 0.6905 -4.7426 -1.5793 13 6 0.7263 -5.8325 -2.5635 14 1 1.5144 -5.6671 -3.2980 15 6 0.8956 -7.2075 -1.8648 16 6 0.2427 -8.1873 -2.8626 17 7 -0.6762 -7.4061 -3.7034 18 6 -1.4232 -7.8938 -4.7136 19 8 -2.1551 -7.1536 -5.3402 20 6 -1.3473 -9.3330 -5.0644 21 6 -2.0610 -9.9997 -6.0990 22 6 -1.6453 -11.2840 -6.0058 23 8 -0.7656 -11.3311 -4.9959 24 7 -0.6053 -10.2456 -4.4879 25 6 -0.6498 -6.0022 -3.2544 26 6 0.3791 -3.4603 -2.2248 27 6 0.1727 -2.3879 -1.1498 28 1 -0.4850 0.8401 -0.0004 29 1 1.0783 -4.0026 1.0289 30 1 2.7730 -3.5060 0.7928 31 1 2.1817 -5.6480 -0.4082 32 1 2.7552 -4.3621 -1.4979 33 1 1.9509 -7.4417 -1.7253 34 1 0.3666 -7.2236 -0.9119 35 1 -0.3112 -8.9552 -2.3225 36 1 1.0111 -8.6487 -3.4829 37 1 -2.7696 -9.5785 -6.7968 38 1 -1.9611 -12.1106 -6.6251 39 1 -0.7312 -5.3293 -4.1080 40 1 -1.4573 -5.8151 -2.5464 41 1 1.2049 -3.1701 -2.8743 42 1 -0.5308 -3.5623 -2.8162 43 1 -0.7156 -2.6232 -0.5638 44 1 0.0530 -1.4120 -1.6203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051989425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:05 Heat of formation + Delta-G solvation = 79.876534 kcal Electronic energy + Delta-G solvation = -27080.140021 eV Core-core repulsion = 23230.406275 eV Total energy + Delta-G solvation = -3849.733747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.45527 -40.26135 -38.53581 -36.85228 -34.45348 -34.09711 -32.32955 -31.52569 -30.76987 -29.71688 -28.71639 -26.34630 -24.95559 -23.56945 -23.15084 -22.88873 -21.98881 -20.49407 -19.98546 -19.16074 -18.18143 -18.12588 -17.29980 -17.06468 -16.26813 -15.70814 -15.00528 -14.85414 -14.53781 -14.31931 -14.04406 -13.92369 -13.70913 -13.48753 -13.40729 -13.14280 -12.85407 -12.70358 -12.44372 -12.07794 -11.66127 -11.44515 -11.20776 -11.02812 -10.93088 -10.80124 -10.75968 -10.48852 -10.42309 -10.28589 -10.17311 -10.03730 -9.75926 -9.59098 -8.87315 -8.51904 -7.91938 -6.63302 -5.77924 -3.22859 0.79322 1.32702 2.46355 2.78472 2.89499 3.36870 3.44473 3.46433 3.55787 4.12482 4.19964 4.49550 4.51726 4.59040 4.63363 4.85787 4.98702 5.00750 5.21793 5.29311 5.40643 5.44944 5.45887 5.51844 5.69533 5.79790 5.82306 5.89880 5.91662 5.98107 6.11808 6.15567 6.25180 6.32356 6.51715 6.68297 6.91819 7.15821 7.23747 7.53476 7.56752 7.62893 7.70088 7.80965 7.82807 8.45270 9.21837 9.84001 10.43483 11.30714 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035323 B = 0.002467 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.503371 B =11347.953811 C =11908.527653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.520 5.520 13 C 0.069 3.931 14 H 0.052 0.948 15 C -0.124 4.124 16 C 0.107 3.893 17 N -0.602 5.602 18 C 0.609 3.391 19 O -0.523 6.523 20 C -0.022 4.022 21 C -0.184 4.184 22 C -0.060 4.060 23 O 0.120 5.880 24 N -0.327 5.327 25 C 0.117 3.883 26 C 0.032 3.968 27 C 0.179 3.821 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.181 0.819 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.026 0.974 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -23.792 -10.668 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.084 4.084 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.069 0.931 15 C -0.162 4.162 16 C -0.016 4.016 17 N -0.335 5.335 18 C 0.395 3.605 19 O -0.398 6.398 20 C -0.182 4.182 21 C -0.207 4.207 22 C -0.141 4.141 23 O 0.044 5.956 24 N -0.028 5.028 25 C -0.005 4.005 26 C -0.097 4.097 27 C 0.053 3.947 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.199 0.801 38 H 0.241 0.759 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.543 -23.239 -9.679 25.221 hybrid contribution 0.424 1.106 -1.292 1.752 sum -1.119 -22.133 -10.970 24.728 Atomic orbital electron populations 1.70001 1.05199 1.25378 1.54240 1.25118 0.95387 0.98380 1.00756 0.86207 0.79244 0.83936 0.77285 1.20317 1.21584 1.21660 1.19214 0.91439 0.84226 1.43284 0.91730 1.44097 1.32701 1.02412 1.52674 1.20973 0.97862 0.86442 0.92494 1.22639 0.89105 0.99611 0.97068 1.62022 1.33934 1.04012 1.24595 1.22735 0.95269 0.92384 0.93665 0.93053 1.22738 1.01393 0.93119 0.98921 1.22154 0.92440 0.94401 0.92597 1.48255 1.42243 1.11157 1.31873 1.16448 0.80254 0.84158 0.79653 1.90825 1.39444 1.57750 1.51805 1.23537 0.99747 0.96264 0.98609 1.22794 1.04068 0.92743 1.01070 1.26057 0.94418 1.00019 0.93561 1.84813 1.47806 1.26364 1.36602 1.74301 1.18952 0.91416 1.18174 1.22333 0.98407 0.80540 0.99235 1.22973 0.98786 0.89803 0.98135 1.20854 0.88864 0.95669 0.89289 0.93626 0.95648 0.92595 0.91783 0.95380 0.89990 0.89108 0.90778 0.91002 0.80117 0.75892 0.90144 0.89517 0.95536 0.91931 0.95466 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 11.11 55.49 0.62 -25.70 16 2 C 0.00 0.06 5.01 -17.43 -0.09 -0.03 16 3 Si 0.90 21.75 29.57 -169.99 -5.03 16.72 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.25 -6.92 9.63 -15.06 -0.14 -7.07 16 8 H 0.07 1.74 7.86 -52.49 -0.41 1.33 16 9 N -0.60 -15.01 3.03 -172.01 -0.52 -15.53 16 10 C 0.15 3.11 6.69 -3.60 -0.02 3.09 16 11 C 0.05 0.77 5.48 -3.70 -0.02 0.75 16 12 N -0.52 -8.87 4.53 -223.78 -1.01 -9.89 16 13 C 0.07 0.97 2.72 -65.57 -0.18 0.79 16 14 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.12 -1.39 5.34 -24.89 -0.13 -1.53 16 16 C 0.11 1.19 5.56 -3.06 -0.02 1.17 16 17 N -0.60 -8.05 3.33 -171.44 -0.57 -8.62 16 18 C 0.61 8.66 7.88 -12.11 -0.10 8.57 16 19 O -0.52 -8.89 17.21 5.37 0.09 -8.80 16 20 C -0.02 -0.26 7.03 -82.53 -0.58 -0.84 16 21 C -0.18 -1.48 10.99 -39.07 -0.43 -1.91 16 22 C -0.06 -0.30 12.28 29.69 0.36 0.06 16 23 O 0.12 0.93 11.18 17.25 0.19 1.13 16 24 N -0.33 -3.40 9.73 33.29 0.32 -3.08 16 25 C 0.12 1.66 5.31 -2.53 -0.01 1.65 16 26 C 0.03 0.62 5.48 -3.70 -0.02 0.60 16 27 C 0.18 4.31 5.38 -3.60 -0.02 4.30 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 31 H 0.06 0.92 6.87 -51.93 -0.36 0.56 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.79 7.82 -51.93 -0.41 0.38 16 36 H 0.07 0.76 7.66 -51.93 -0.40 0.37 16 37 H 0.18 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.22 0.01 8.06 -52.48 -0.42 -0.41 16 39 H 0.08 1.21 7.74 -51.93 -0.40 0.81 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 1.11 6.79 -51.93 -0.35 0.76 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.37 6.19 -51.93 -0.32 2.05 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -32.83 354.03 -8.38 -41.21 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.41 Total: -2.38 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -1.40 Total: 9.60 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -1.16 Total: -62.82 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.29 Total: -7.67 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.83 -8.38 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051989425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.091 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds