Wall clock time and date at job start Tue Mar 31 2020 12:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00010 * 2 1 4 4 H 1.48496 * 109.46943 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46799 * 299.99444 * 3 2 1 6 6 H 1.48497 * 109.46972 * 59.99598 * 3 2 1 7 7 C 1.38816 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00212 * 193.34864 * 7 2 1 9 9 N 1.36934 * 119.99563 * 13.35364 * 7 2 1 10 10 C 1.47079 * 120.88082 * 209.20249 * 9 7 2 11 11 C 1.53246 * 108.52009 * 231.16440 * 10 9 7 12 12 N 1.46898 * 109.33963 * 306.16589 * 11 10 9 13 13 C 1.46898 * 110.99912 * 187.25519 * 12 11 10 14 14 H 1.09001 * 110.88375 * 298.17177 * 13 12 11 15 15 C 1.55155 * 111.00363 * 62.10050 * 13 12 11 16 16 C 1.54339 * 103.02061 * 153.38394 * 15 13 12 17 17 N 1.47022 * 107.26259 * 338.13470 * 16 15 13 18 18 C 1.34779 * 125.64740 * 178.85007 * 17 16 15 19 19 O 1.21497 * 119.99883 * 179.69412 * 18 17 16 20 20 C 1.48329 * 120.00087 * 359.42282 * 18 17 16 21 21 C 1.42273 * 126.93971 * 180.27277 * 20 18 17 22 22 C 1.35315 * 103.91997 * 180.02562 * 21 20 18 23 23 O 1.34014 * 106.66989 * 359.97438 * 22 21 20 24 24 N 1.20907 * 111.84682 * 359.71361 * 23 22 21 25 25 C 1.47424 * 108.70396 * 358.59107 * 17 16 15 26 26 C 1.46896 * 111.26617 * 63.10453 * 12 11 10 27 27 C 1.47078 * 120.88602 * 29.17643 * 9 7 2 28 28 H 0.97002 * 119.99989 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.63514 * 111.45106 * 10 9 7 30 30 H 1.08998 * 109.78767 * 350.96380 * 10 9 7 31 31 H 1.09003 * 109.49156 * 186.20585 * 11 10 9 32 32 H 1.08996 * 109.49076 * 66.12585 * 11 10 9 33 33 H 1.08999 * 110.71736 * 271.93480 * 15 13 12 34 34 H 1.08998 * 110.72209 * 35.21268 * 15 13 12 35 35 H 1.09005 * 109.99027 * 218.66602 * 16 15 13 36 36 H 1.08998 * 109.78402 * 97.48989 * 16 15 13 37 37 H 1.08003 * 128.03707 * 0.03406 * 21 20 18 38 38 H 1.08003 * 126.66147 * 179.97438 * 22 21 20 39 39 H 1.09002 * 110.36770 * 143.19417 * 25 17 16 40 40 H 1.09004 * 110.36346 * 265.40367 * 25 17 16 41 41 H 1.08999 * 109.49584 * 56.85799 * 26 12 11 42 42 H 1.09004 * 109.49129 * 176.93571 * 26 12 11 43 43 H 1.08995 * 109.63401 * 248.54560 * 27 9 7 44 44 H 1.09004 * 109.62759 * 8.93211 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0684 -1.2147 0.2165 9 7 1.3534 -2.3721 -0.2728 10 6 1.8093 -3.6463 0.3032 11 6 1.9513 -4.6692 -0.8291 12 7 0.6905 -4.7426 -1.5793 13 6 0.7263 -5.8325 -2.5635 14 1 1.5144 -5.6671 -3.2980 15 6 0.8956 -7.2075 -1.8648 16 6 0.2427 -8.1873 -2.8626 17 7 -0.6762 -7.4061 -3.7034 18 6 -1.4232 -7.8938 -4.7136 19 8 -2.1551 -7.1536 -5.3402 20 6 -1.3473 -9.3330 -5.0644 21 6 -2.0610 -9.9997 -6.0990 22 6 -1.6453 -11.2840 -6.0058 23 8 -0.7656 -11.3311 -4.9959 24 7 -0.6053 -10.2456 -4.4879 25 6 -0.6498 -6.0022 -3.2544 26 6 0.3791 -3.4603 -2.2248 27 6 0.1727 -2.3879 -1.1498 28 1 -0.4850 0.8401 -0.0004 29 1 1.0783 -4.0026 1.0289 30 1 2.7730 -3.5060 0.7928 31 1 2.1817 -5.6480 -0.4082 32 1 2.7552 -4.3621 -1.4979 33 1 1.9509 -7.4417 -1.7253 34 1 0.3666 -7.2236 -0.9119 35 1 -0.3112 -8.9552 -2.3225 36 1 1.0111 -8.6487 -3.4829 37 1 -2.7696 -9.5785 -6.7968 38 1 -1.9611 -12.1106 -6.6251 39 1 -0.7312 -5.3293 -4.1080 40 1 -1.4573 -5.8151 -2.5464 41 1 1.2049 -3.1701 -2.8743 42 1 -0.5308 -3.5623 -2.8162 43 1 -0.7156 -2.6232 -0.5638 44 1 0.0530 -1.4120 -1.6203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051989425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:04 Heat of formation + Delta-G solvation = 56.846128 kcal Electronic energy + Delta-G solvation = -27081.138695 eV Core-core repulsion = 23230.406275 eV Total energy + Delta-G solvation = -3850.732420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.12304 -41.36239 -39.88847 -38.23647 -35.91956 -35.02483 -33.45962 -32.81339 -32.13114 -31.28833 -29.94790 -27.96642 -26.14294 -24.70992 -24.59763 -23.98786 -23.19588 -21.71290 -20.86405 -20.82993 -18.97317 -18.88182 -18.77538 -18.16860 -17.64114 -16.83162 -16.73585 -16.10215 -15.83769 -15.57185 -15.31504 -15.23956 -15.06791 -14.93447 -14.66440 -14.25491 -14.06355 -13.96313 -13.72731 -13.23842 -13.13255 -12.85789 -12.71617 -12.57511 -12.43758 -12.23491 -12.02950 -11.97258 -11.81465 -11.61315 -11.53924 -11.46745 -11.36985 -10.71431 -10.61567 -9.94644 -9.36070 -8.66131 -7.88307 -5.36705 0.04287 0.77451 1.44994 1.46265 1.50070 1.56957 1.93169 2.29928 2.49225 2.72891 2.91779 3.27953 3.30214 3.56240 3.65310 3.68144 3.96484 3.98887 4.13436 4.20744 4.24051 4.31145 4.34641 4.48222 4.54823 4.59807 4.64642 4.68212 4.72298 4.79297 4.87471 4.89062 4.97856 5.02201 5.05485 5.15998 5.20847 5.36796 5.60883 5.67561 6.07944 6.14865 6.21130 6.37985 6.67111 7.06294 7.12843 7.82749 8.37724 9.18435 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035323 B = 0.002467 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.503371 B =11347.953811 C =11908.527653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.615 5.615 10 C 0.143 3.857 11 C 0.057 3.943 12 N -0.526 5.526 13 C 0.074 3.926 14 H 0.055 0.945 15 C -0.113 4.113 16 C 0.113 3.887 17 N -0.604 5.604 18 C 0.603 3.397 19 O -0.564 6.564 20 C -0.055 4.055 21 C -0.206 4.206 22 C -0.021 4.021 23 O 0.130 5.870 24 N -0.341 5.341 25 C 0.119 3.881 26 C 0.050 3.950 27 C 0.188 3.812 28 H 0.250 0.750 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.025 0.975 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.188 0.812 38 H 0.280 0.720 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.020 0.980 42 H 0.074 0.926 43 H -0.001 1.001 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 -27.014 -11.412 29.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.391 4.391 8 H 0.086 0.914 9 N -0.339 5.339 10 C 0.018 3.982 11 C -0.072 4.072 12 N -0.251 5.251 13 C -0.035 4.035 14 H 0.072 0.928 15 C -0.151 4.151 16 C -0.009 4.009 17 N -0.337 5.337 18 C 0.391 3.609 19 O -0.442 6.442 20 C -0.212 4.212 21 C -0.229 4.229 22 C -0.101 4.101 23 O 0.052 5.948 24 N -0.040 5.040 25 C -0.004 4.004 26 C -0.080 4.080 27 C 0.062 3.938 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.043 0.957 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.206 0.794 38 H 0.295 0.705 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.039 0.961 42 H 0.092 0.908 43 H 0.017 0.983 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.075 -26.492 -10.395 28.458 hybrid contribution -0.052 1.962 -1.066 2.233 sum -0.127 -24.530 -11.461 27.076 Atomic orbital electron populations 1.70170 1.06693 1.25761 1.55717 1.25902 0.96162 1.01628 1.01121 0.85172 0.78593 0.79727 0.76747 1.18946 1.21786 1.21841 1.19554 0.91821 0.85383 1.42385 0.91402 1.44384 1.32675 1.03423 1.53438 1.21152 0.97683 0.85555 0.93815 1.22496 0.88772 1.00230 0.95665 1.61922 1.34223 1.03468 1.25492 1.22702 0.94932 0.92567 0.93317 0.92754 1.22740 1.03028 0.90822 0.98480 1.22223 0.92200 0.94156 0.92315 1.48348 1.42457 1.10876 1.32004 1.16918 0.79503 0.85374 0.79151 1.90785 1.41125 1.59151 1.53185 1.23367 1.02028 0.95036 1.00731 1.23046 1.04912 0.93882 1.01077 1.26951 0.91403 1.00161 0.91614 1.84780 1.47904 1.25184 1.36969 1.74290 1.19161 0.91809 1.18746 1.22174 0.98391 0.81353 0.98467 1.22594 0.99197 0.89879 0.96287 1.20566 0.87844 0.95593 0.89791 0.94106 0.96435 0.91875 0.87839 0.95710 0.87447 0.89119 0.90048 0.90042 0.79445 0.70501 0.91564 0.90717 0.96146 0.90784 0.98312 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.60 11.11 21.65 0.24 -56.36 16 2 C -0.05 -3.01 5.01 84.86 0.42 -2.58 16 3 Si 0.97 45.48 29.57 68.60 2.03 47.51 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.26 -14.55 9.63 84.03 0.81 -13.74 16 8 H 0.07 3.66 7.86 -2.91 -0.02 3.64 16 9 N -0.62 -31.58 3.03 -698.13 -2.11 -33.69 16 10 C 0.14 5.91 6.69 86.35 0.58 6.49 16 11 C 0.06 1.85 5.48 86.39 0.47 2.32 16 12 N -0.53 -17.46 4.53 -861.91 -3.90 -21.36 16 13 C 0.07 1.96 2.72 46.31 0.13 2.08 16 14 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 15 C -0.11 -2.22 5.34 31.79 0.17 -2.05 16 16 C 0.11 2.27 5.56 86.73 0.48 2.76 16 17 N -0.60 -15.93 3.33 -814.60 -2.71 -18.64 16 18 C 0.60 17.33 7.88 86.93 0.68 18.02 16 19 O -0.56 -19.94 17.21 -3.70 -0.06 -20.01 16 20 C -0.05 -1.19 7.03 42.96 0.30 -0.89 16 21 C -0.21 -2.93 10.99 22.60 0.25 -2.68 16 22 C -0.02 -0.13 12.28 67.14 0.82 0.69 16 23 O 0.13 1.60 11.18 71.90 0.80 2.41 16 24 N -0.34 -6.38 9.73 -49.52 -0.48 -6.86 16 25 C 0.12 3.40 5.31 86.85 0.46 3.86 16 26 C 0.05 1.96 5.48 86.38 0.47 2.43 16 27 C 0.19 9.44 5.38 86.35 0.46 9.90 16 28 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 2.47 7.96 -2.39 -0.02 2.45 16 31 H 0.10 2.57 6.87 -2.39 -0.02 2.55 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.63 7.94 -2.39 -0.02 1.62 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 1.56 7.82 -2.38 -0.02 1.54 16 36 H 0.08 1.52 7.66 -2.39 -0.02 1.50 16 37 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.28 -1.67 8.06 -2.91 -0.02 -1.70 16 39 H 0.07 2.06 7.74 -2.39 -0.02 2.05 16 40 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 2.72 6.79 -2.39 -0.02 2.70 16 43 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.05 3.10 6.19 -2.38 -0.01 3.08 16 Total: -1.00 -75.31 354.03 1.33 -73.99 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.00 Total: 6.40 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 6.52 Total: 26.62 kcal Atomic # 7 Polarization: -127.95 SS G_CDS: -8.97 Total: -136.92 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.74 Total: -17.60 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -75.31 1.33 -73.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051989425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.833 kcal (2) G-P(sol) polarization free energy of solvation -75.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds