Wall clock time and date at job start Tue Mar 31 2020 12:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48504 * 109.46841 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.47071 * 29.99501 * 3 2 1 6 6 H 1.48499 * 109.47488 * 150.00041 * 3 2 1 7 7 C 1.38812 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00276 * 197.00436 * 7 2 1 9 9 N 1.36940 * 119.99445 * 16.99975 * 7 2 1 10 10 C 1.47081 * 120.88008 * 206.57802 * 9 7 2 11 11 C 1.53235 * 108.52102 * 231.21315 * 10 9 7 12 12 N 1.46901 * 109.34060 * 306.17165 * 11 10 9 13 13 C 1.46895 * 111.00312 * 187.25724 * 12 11 10 14 14 H 1.09000 * 110.88817 * 297.57363 * 13 12 11 15 15 C 1.55161 * 111.00770 * 173.64528 * 13 12 11 16 16 C 1.54317 * 102.94319 * 206.42226 * 15 13 12 17 17 N 1.47025 * 107.27499 * 22.19616 * 16 15 13 18 18 C 1.34770 * 125.65256 * 181.02696 * 17 16 15 19 19 O 1.21606 * 120.00286 * 180.02562 * 18 17 16 20 20 C 1.47428 * 120.00115 * 0.03560 * 18 17 16 21 21 C 1.36082 * 126.45308 * 180.02562 * 20 18 17 22 22 O 1.34254 * 106.95466 * 180.02562 * 21 20 18 23 23 C 1.34055 * 108.22358 * 359.97438 * 22 21 20 24 24 N 1.29935 * 109.24267 * 359.72507 * 23 22 21 25 25 C 1.47427 * 108.69900 * 1.05439 * 17 16 15 26 26 C 1.46896 * 111.27163 * 63.10432 * 12 11 10 27 27 C 1.47074 * 120.88099 * 26.60929 * 9 7 2 28 28 H 0.97000 * 119.99781 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.62622 * 111.50063 * 10 9 7 30 30 H 1.09003 * 109.62424 * 350.91888 * 10 9 7 31 31 H 1.09004 * 109.49447 * 186.21224 * 11 10 9 32 32 H 1.09004 * 109.51846 * 66.14348 * 11 10 9 33 33 H 1.09002 * 110.71775 * 324.78600 * 15 13 12 34 34 H 1.08997 * 110.71583 * 88.05564 * 15 13 12 35 35 H 1.09001 * 109.88419 * 262.77605 * 16 15 13 36 36 H 1.09003 * 110.01278 * 141.68425 * 16 15 13 37 37 H 1.08005 * 126.52608 * 359.97438 * 21 20 18 38 38 H 1.08004 * 125.37967 * 179.97438 * 23 22 21 39 39 H 1.08998 * 110.36549 * 217.03282 * 25 17 16 40 40 H 1.09001 * 110.36698 * 94.71582 * 25 17 16 41 41 H 1.08993 * 109.49398 * 56.85765 * 26 12 11 42 42 H 1.09000 * 109.49317 * 176.94056 * 26 12 11 43 43 H 1.09010 * 109.62596 * 248.49763 * 27 9 7 44 44 H 1.09001 * 109.63431 * 9.07637 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0550 -1.2224 0.2741 9 7 1.3705 -2.3623 -0.3457 10 6 1.8312 -3.6609 0.1688 11 6 2.0033 -4.6197 -1.0139 12 7 0.7560 -4.6656 -1.7887 13 6 0.8202 -5.7005 -2.8292 14 1 1.6117 -5.4822 -3.5461 15 6 -0.5489 -5.8583 -3.5419 16 6 -0.5148 -7.3198 -4.0362 17 7 0.4593 -8.0399 -3.2030 18 6 0.7938 -9.3391 -3.3308 19 8 1.6156 -9.8320 -2.5821 20 6 0.1635 -10.1630 -4.3784 21 6 0.4013 -11.4803 -4.6234 22 8 -0.3782 -11.8331 -5.6579 23 6 -1.0800 -10.7568 -6.0401 24 7 -0.7701 -9.7508 -5.2784 25 6 1.0092 -7.1053 -2.2042 26 6 0.4411 -3.3537 -2.3697 27 6 0.2050 -2.3428 -1.2424 28 1 -0.4850 0.8401 -0.0004 29 1 1.0922 -4.0631 0.8618 30 1 2.7857 -3.5345 0.6797 31 1 2.2375 -5.6174 -0.6423 32 1 2.8149 -4.2693 -1.6517 33 1 -1.3689 -5.7077 -2.8397 34 1 -0.6279 -5.1687 -4.3823 35 1 -0.2040 -7.3508 -5.0805 36 1 -1.5005 -7.7728 -3.9293 37 1 1.0873 -12.1201 -4.0880 38 1 -1.7936 -10.7310 -6.8505 39 1 2.0673 -7.3073 -2.0378 40 1 0.4559 -7.1816 -1.2682 41 1 1.2742 -3.0204 -2.9884 42 1 -0.4577 -3.4331 -2.9813 43 1 -0.6904 -2.6184 -0.6851 44 1 0.0843 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051997098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:02 Heat of formation + Delta-G solvation = 40.397377 kcal Electronic energy + Delta-G solvation = -27035.309847 eV Core-core repulsion = 23183.864156 eV Total energy + Delta-G solvation = -3851.445691 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.80827 -40.13100 -38.46434 -36.78130 -35.25381 -34.11524 -31.70170 -30.82106 -30.31553 -30.05727 -28.48828 -26.22455 -24.63117 -23.25206 -23.12515 -22.74862 -21.93834 -20.40793 -20.00467 -19.13123 -18.09730 -17.20579 -17.06550 -16.89870 -16.21277 -15.79820 -15.17341 -14.96797 -14.63196 -14.32970 -14.11610 -13.87740 -13.78747 -13.44247 -13.31407 -13.15379 -12.77944 -12.63442 -12.33354 -11.82905 -11.76692 -11.36287 -11.19699 -11.09417 -10.96960 -10.77581 -10.74112 -10.41454 -10.36820 -10.27430 -10.02789 -9.71868 -9.59583 -9.58473 -8.72874 -8.50092 -7.88200 -6.66045 -5.77315 -3.18355 0.75160 1.68904 2.27480 2.72952 3.05279 3.38406 3.45373 3.46624 3.61552 4.25196 4.27695 4.45747 4.51132 4.68587 4.70755 5.10592 5.12558 5.20704 5.29939 5.34825 5.40783 5.48603 5.55759 5.71246 5.80909 5.84215 5.89630 5.94743 6.00122 6.10267 6.16001 6.20774 6.30629 6.34793 6.54194 6.69785 6.94153 7.02998 7.23925 7.32446 7.57669 7.63835 7.69882 7.82349 7.90160 8.44403 9.22345 9.85601 10.43979 11.31521 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038972 B = 0.002414 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.291256 B =11598.055187 C =12068.968365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.041 3.959 12 N -0.520 5.520 13 C 0.069 3.931 14 H 0.050 0.950 15 C -0.126 4.126 16 C 0.116 3.884 17 N -0.599 5.599 18 C 0.612 3.388 19 O -0.540 6.540 20 C -0.067 4.067 21 C 0.015 3.985 22 O -0.200 6.200 23 C 0.176 3.824 24 N -0.462 5.462 25 C 0.117 3.883 26 C 0.036 3.964 27 C 0.178 3.822 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.231 0.769 38 H 0.255 0.745 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 -21.326 -13.582 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.023 3.977 11 C -0.088 4.088 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.068 0.932 15 C -0.164 4.164 16 C -0.007 4.007 17 N -0.332 5.332 18 C 0.400 3.600 19 O -0.418 6.418 20 C -0.187 4.187 21 C -0.059 4.059 22 O -0.085 6.085 23 C -0.053 4.053 24 N -0.191 5.191 25 C -0.006 4.006 26 C -0.092 4.092 27 C 0.052 3.948 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.270 0.730 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.506 -21.008 -12.891 24.896 hybrid contribution 1.206 0.483 -0.682 1.467 sum -2.300 -20.525 -13.573 24.714 Atomic orbital electron populations 1.70029 1.05173 1.25439 1.54197 1.25022 0.95320 0.98331 1.01107 0.86284 0.79099 0.83725 0.77631 1.21535 1.21757 1.20484 1.19211 0.92589 0.84780 1.41442 0.91630 1.44131 1.34149 1.01278 1.52353 1.20971 0.97831 0.86402 0.92535 1.22681 0.89546 0.99612 0.97000 1.62016 1.34376 1.05523 1.22667 1.22743 0.96687 0.91465 0.93202 0.93173 1.22766 0.98287 0.94642 1.00733 1.22088 0.92587 0.91317 0.94669 1.48167 1.42033 1.08567 1.34387 1.16330 0.81231 0.80250 0.82188 1.90838 1.34325 1.71846 1.44788 1.21730 1.01851 0.93941 1.01188 1.25305 0.95496 0.96210 0.88873 1.84450 1.43891 1.40043 1.40162 1.28208 0.97695 0.78675 1.00695 1.70912 1.12614 1.30248 1.05314 1.22299 0.99648 0.86921 0.91693 1.22914 0.98759 0.88848 0.98721 1.20871 0.88988 0.96519 0.88390 0.93637 0.95573 0.92583 0.91842 0.95305 0.89232 0.90119 0.90904 0.90668 0.75327 0.72956 0.90461 0.89807 0.95673 0.91839 0.95520 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 11.15 55.49 0.62 -25.56 16 2 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 3 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.90 9.63 -15.06 -0.15 -7.05 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -15.05 3.04 -172.01 -0.52 -15.58 16 10 C 0.15 3.18 6.69 -3.60 -0.02 3.16 16 11 C 0.04 0.73 5.48 -3.70 -0.02 0.71 16 12 N -0.52 -8.94 4.53 -223.78 -1.01 -9.96 16 13 C 0.07 0.97 2.71 -65.56 -0.18 0.79 16 14 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 15 C -0.13 -1.50 5.34 -24.90 -0.13 -1.63 16 16 C 0.12 1.31 5.53 -3.07 -0.02 1.29 16 17 N -0.60 -7.91 3.33 -171.78 -0.57 -8.49 16 18 C 0.61 8.41 7.85 -12.52 -0.10 8.31 16 19 O -0.54 -8.74 17.15 5.27 0.09 -8.65 16 20 C -0.07 -0.73 6.83 -83.02 -0.57 -1.30 16 21 C 0.02 0.12 11.94 29.96 0.36 0.48 16 22 O -0.20 -1.37 10.73 6.51 0.07 -1.30 16 23 C 0.18 1.03 13.19 51.96 0.69 1.72 16 24 N -0.46 -4.34 8.83 -11.48 -0.10 -4.44 16 25 C 0.12 1.62 5.31 -2.53 -0.01 1.61 16 26 C 0.04 0.69 5.48 -3.70 -0.02 0.67 16 27 C 0.18 4.24 5.42 -3.60 -0.02 4.22 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 31 H 0.06 0.99 6.79 -51.93 -0.35 0.64 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 0.88 7.94 -51.93 -0.41 0.46 16 35 H 0.07 0.79 7.64 -51.93 -0.40 0.39 16 36 H 0.08 0.82 7.74 -51.93 -0.40 0.42 16 37 H 0.23 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.25 0.18 8.06 -52.48 -0.42 -0.24 16 39 H 0.08 1.11 7.74 -51.93 -0.40 0.71 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 1.06 6.87 -51.93 -0.36 0.70 16 43 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.09 2.34 6.12 -51.93 -0.32 2.02 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -33.39 354.09 -7.81 -41.19 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.41 Total: -2.15 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -0.28 Total: 12.90 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -1.59 Total: -64.03 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.16 Total: -9.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.39 -7.81 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051997098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.592 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds