Wall clock time and date at job start Tue Mar 31 2020 12:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48504 * 109.46841 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.47071 * 29.99501 * 3 2 1 6 6 H 1.48499 * 109.47488 * 150.00041 * 3 2 1 7 7 C 1.38812 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00276 * 197.00436 * 7 2 1 9 9 N 1.36940 * 119.99445 * 16.99975 * 7 2 1 10 10 C 1.47081 * 120.88008 * 206.57802 * 9 7 2 11 11 C 1.53235 * 108.52102 * 231.21315 * 10 9 7 12 12 N 1.46901 * 109.34060 * 306.17165 * 11 10 9 13 13 C 1.46895 * 111.00312 * 187.25724 * 12 11 10 14 14 H 1.09000 * 110.88817 * 297.57363 * 13 12 11 15 15 C 1.55161 * 111.00770 * 173.64528 * 13 12 11 16 16 C 1.54317 * 102.94319 * 206.42226 * 15 13 12 17 17 N 1.47025 * 107.27499 * 22.19616 * 16 15 13 18 18 C 1.34770 * 125.65256 * 181.02696 * 17 16 15 19 19 O 1.21606 * 120.00286 * 180.02562 * 18 17 16 20 20 C 1.47428 * 120.00115 * 0.03560 * 18 17 16 21 21 C 1.36082 * 126.45308 * 180.02562 * 20 18 17 22 22 O 1.34254 * 106.95466 * 180.02562 * 21 20 18 23 23 C 1.34055 * 108.22358 * 359.97438 * 22 21 20 24 24 N 1.29935 * 109.24267 * 359.72507 * 23 22 21 25 25 C 1.47427 * 108.69900 * 1.05439 * 17 16 15 26 26 C 1.46896 * 111.27163 * 63.10432 * 12 11 10 27 27 C 1.47074 * 120.88099 * 26.60929 * 9 7 2 28 28 H 0.97000 * 119.99781 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.62622 * 111.50063 * 10 9 7 30 30 H 1.09003 * 109.62424 * 350.91888 * 10 9 7 31 31 H 1.09004 * 109.49447 * 186.21224 * 11 10 9 32 32 H 1.09004 * 109.51846 * 66.14348 * 11 10 9 33 33 H 1.09002 * 110.71775 * 324.78600 * 15 13 12 34 34 H 1.08997 * 110.71583 * 88.05564 * 15 13 12 35 35 H 1.09001 * 109.88419 * 262.77605 * 16 15 13 36 36 H 1.09003 * 110.01278 * 141.68425 * 16 15 13 37 37 H 1.08005 * 126.52608 * 359.97438 * 21 20 18 38 38 H 1.08004 * 125.37967 * 179.97438 * 23 22 21 39 39 H 1.08998 * 110.36549 * 217.03282 * 25 17 16 40 40 H 1.09001 * 110.36698 * 94.71582 * 25 17 16 41 41 H 1.08993 * 109.49398 * 56.85765 * 26 12 11 42 42 H 1.09000 * 109.49317 * 176.94056 * 26 12 11 43 43 H 1.09010 * 109.62596 * 248.49763 * 27 9 7 44 44 H 1.09001 * 109.63431 * 9.07637 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0550 -1.2224 0.2741 9 7 1.3705 -2.3623 -0.3457 10 6 1.8312 -3.6609 0.1688 11 6 2.0033 -4.6197 -1.0139 12 7 0.7560 -4.6656 -1.7887 13 6 0.8202 -5.7005 -2.8292 14 1 1.6117 -5.4822 -3.5461 15 6 -0.5489 -5.8583 -3.5419 16 6 -0.5148 -7.3198 -4.0362 17 7 0.4593 -8.0399 -3.2030 18 6 0.7938 -9.3391 -3.3308 19 8 1.6156 -9.8320 -2.5821 20 6 0.1635 -10.1630 -4.3784 21 6 0.4013 -11.4803 -4.6234 22 8 -0.3782 -11.8331 -5.6579 23 6 -1.0800 -10.7568 -6.0401 24 7 -0.7701 -9.7508 -5.2784 25 6 1.0092 -7.1053 -2.2042 26 6 0.4411 -3.3537 -2.3697 27 6 0.2050 -2.3428 -1.2424 28 1 -0.4850 0.8401 -0.0004 29 1 1.0922 -4.0631 0.8618 30 1 2.7857 -3.5345 0.6797 31 1 2.2375 -5.6174 -0.6423 32 1 2.8149 -4.2693 -1.6517 33 1 -1.3689 -5.7077 -2.8397 34 1 -0.6279 -5.1687 -4.3823 35 1 -0.2040 -7.3508 -5.0805 36 1 -1.5005 -7.7728 -3.9293 37 1 1.0873 -12.1201 -4.0880 38 1 -1.7936 -10.7310 -6.8505 39 1 2.0673 -7.3073 -2.0378 40 1 0.4559 -7.1816 -1.2682 41 1 1.2742 -3.0204 -2.9884 42 1 -0.4577 -3.4331 -2.9813 43 1 -0.6904 -2.6184 -0.6851 44 1 0.0843 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051997098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:01 Heat of formation + Delta-G solvation = 15.026742 kcal Electronic energy + Delta-G solvation = -27036.410000 eV Core-core repulsion = 23183.864156 eV Total energy + Delta-G solvation = -3852.545845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.37684 -41.20602 -39.80482 -38.14561 -36.02482 -35.64536 -33.40433 -31.83712 -31.77412 -31.21729 -29.74134 -27.88250 -25.78280 -24.56014 -24.48500 -23.61258 -23.11907 -21.61749 -20.89532 -20.79320 -18.95712 -18.79050 -17.84476 -17.78534 -17.43241 -16.85605 -16.60273 -16.04778 -15.78691 -15.58633 -15.50214 -15.27295 -15.18825 -14.94355 -14.57728 -14.54953 -14.00360 -13.83911 -13.65392 -13.31349 -12.98979 -12.71381 -12.58571 -12.53990 -12.42336 -12.19876 -12.02300 -11.90779 -11.81794 -11.72280 -11.45612 -11.38525 -11.32163 -10.58279 -10.25658 -9.73359 -9.33403 -8.68334 -7.87356 -5.31877 0.08617 1.08323 1.47105 1.47968 1.57160 1.63041 1.91931 2.17330 2.50926 2.89902 3.04513 3.27749 3.40012 3.65897 3.69877 3.78888 3.88581 4.05288 4.19271 4.31975 4.33325 4.38120 4.53509 4.55209 4.59256 4.62008 4.66463 4.68372 4.84089 4.88352 4.89916 4.96913 5.02073 5.12256 5.19296 5.21848 5.28331 5.37960 5.61684 5.70459 6.12144 6.21829 6.30458 6.38043 6.49454 6.91559 7.14048 7.84228 8.38248 9.19432 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038972 B = 0.002414 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.291256 B =11598.055187 C =12068.968365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.615 5.615 10 C 0.146 3.854 11 C 0.053 3.947 12 N -0.526 5.526 13 C 0.073 3.927 14 H 0.052 0.948 15 C -0.119 4.119 16 C 0.127 3.873 17 N -0.604 5.604 18 C 0.607 3.393 19 O -0.576 6.576 20 C -0.102 4.102 21 C 0.032 3.968 22 O -0.197 6.197 23 C 0.199 3.801 24 N -0.492 5.492 25 C 0.121 3.879 26 C 0.054 3.946 27 C 0.185 3.815 28 H 0.251 0.749 29 H 0.017 0.983 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.024 0.976 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.249 0.751 38 H 0.302 0.698 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.019 0.981 42 H 0.089 0.911 43 H 0.000 1.000 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -22.882 -15.725 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.339 5.339 10 C 0.020 3.980 11 C -0.076 4.076 12 N -0.251 5.251 13 C -0.036 4.036 14 H 0.070 0.930 15 C -0.157 4.157 16 C 0.005 3.995 17 N -0.335 5.335 18 C 0.397 3.603 19 O -0.457 6.457 20 C -0.220 4.220 21 C -0.043 4.043 22 O -0.082 6.082 23 C -0.030 4.030 24 N -0.221 5.221 25 C -0.001 4.001 26 C -0.075 4.075 27 C 0.059 3.941 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.265 0.735 38 H 0.317 0.683 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.108 0.892 43 H 0.018 0.982 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.669 -22.579 -15.047 27.381 hybrid contribution 1.210 0.858 -0.026 1.484 sum -2.459 -21.721 -15.073 26.553 Atomic orbital electron populations 1.70183 1.06554 1.25875 1.55440 1.25779 0.96108 1.01405 1.01320 0.85255 0.78017 0.79517 0.77569 1.21115 1.22078 1.19527 1.19522 0.92841 0.85991 1.41015 0.91647 1.44420 1.34329 1.02054 1.53097 1.21096 0.97451 0.85552 0.93918 1.22489 0.89717 0.99742 0.95673 1.61924 1.34073 1.05296 1.23832 1.22712 0.98264 0.90273 0.92366 0.92973 1.22761 0.96483 0.95571 1.00905 1.22066 0.92416 0.90391 0.94623 1.48254 1.42271 1.08644 1.34357 1.16770 0.80793 0.80349 0.82404 1.90802 1.35982 1.72515 1.46356 1.21466 1.03822 0.94720 1.02033 1.25642 0.94824 0.95418 0.88407 1.84503 1.43754 1.40320 1.39662 1.29278 0.96449 0.77278 0.99972 1.70844 1.13282 1.31832 1.06176 1.22131 0.99186 0.87081 0.91737 1.22580 0.99739 0.88471 0.96661 1.20647 0.87769 0.96426 0.89213 0.94013 0.96495 0.92277 0.89394 0.95752 0.89743 0.88441 0.90083 0.90104 0.73513 0.68301 0.91157 0.90706 0.96248 0.89236 0.98160 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 11.15 21.65 0.24 -55.33 16 2 C -0.05 -2.86 4.94 84.86 0.42 -2.44 16 3 Si 0.97 45.18 29.59 68.60 2.03 47.21 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.26 -14.75 9.63 84.03 0.81 -13.94 16 8 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 9 N -0.61 -31.69 3.04 -698.13 -2.12 -33.81 16 10 C 0.15 6.26 6.69 86.35 0.58 6.83 16 11 C 0.05 1.86 5.48 86.38 0.47 2.33 16 12 N -0.53 -17.63 4.53 -861.91 -3.90 -21.53 16 13 C 0.07 1.96 2.71 46.31 0.13 2.08 16 14 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 15 C -0.12 -2.59 5.34 31.78 0.17 -2.42 16 16 C 0.13 2.62 5.53 86.73 0.48 3.10 16 17 N -0.60 -15.38 3.33 -815.66 -2.71 -18.09 16 18 C 0.61 16.36 7.85 86.66 0.68 17.04 16 19 O -0.58 -18.71 17.15 -4.05 -0.07 -18.78 16 20 C -0.10 -2.08 6.83 40.41 0.28 -1.81 16 21 C 0.03 0.45 11.94 67.32 0.80 1.26 16 22 O -0.20 -2.09 10.73 0.37 0.00 -2.09 16 23 C 0.20 1.62 13.19 130.52 1.72 3.34 16 24 N -0.49 -8.07 8.83 -305.14 -2.70 -10.76 16 25 C 0.12 3.28 5.31 86.86 0.46 3.74 16 26 C 0.05 2.03 5.48 86.38 0.47 2.50 16 27 C 0.19 9.04 5.42 86.35 0.47 9.51 16 28 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 2.45 7.95 -2.39 -0.02 2.43 16 31 H 0.09 2.66 6.79 -2.38 -0.02 2.65 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 1.82 7.94 -2.39 -0.02 1.80 16 35 H 0.08 1.57 7.64 -2.39 -0.02 1.55 16 36 H 0.08 1.60 7.74 -2.39 -0.02 1.59 16 37 H 0.25 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.30 -1.07 8.06 -2.91 -0.02 -1.09 16 39 H 0.07 1.99 7.74 -2.39 -0.02 1.97 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 2.86 6.87 -2.39 -0.02 2.84 16 43 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 44 H 0.06 3.20 6.12 -2.39 -0.01 3.18 16 Total: -1.00 -74.35 354.09 -0.28 -74.63 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.00 Total: 7.40 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: 7.94 Total: 31.14 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -11.19 Total: -139.52 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.07 Total: -20.87 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.35 -0.28 -74.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051997098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.656 kcal (2) G-P(sol) polarization free energy of solvation -74.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds