Wall clock time and date at job start Tue Mar 31 2020 12:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47240 * 269.25774 * 3 2 1 5 5 H 1.48500 * 109.47092 * 29.25815 * 3 2 1 6 6 H 1.48501 * 109.47173 * 149.25663 * 3 2 1 7 7 C 1.38814 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00032 * 340.57332 * 7 2 1 9 9 N 1.36937 * 119.99977 * 160.57433 * 7 2 1 10 10 C 1.47077 * 120.88263 * 331.61706 * 9 7 2 11 11 C 1.53241 * 108.51771 * 231.16045 * 10 9 7 12 12 N 1.46897 * 109.34166 * 306.16921 * 11 10 9 13 13 C 1.46901 * 110.99787 * 187.25485 * 12 11 10 14 14 H 1.08996 * 110.88548 * 297.64853 * 13 12 11 15 15 C 1.55154 * 111.00424 * 61.57200 * 13 12 11 16 16 C 1.54330 * 102.94183 * 153.57646 * 15 13 12 17 17 N 1.47016 * 107.26947 * 337.80734 * 16 15 13 18 18 C 1.34775 * 125.64788 * 178.91099 * 17 16 15 19 19 O 1.21609 * 120.00252 * 180.02562 * 18 17 16 20 20 C 1.47421 * 120.00017 * 0.03331 * 18 17 16 21 21 C 1.36092 * 126.44946 * 180.02562 * 20 18 17 22 22 O 1.34262 * 106.94795 * 180.02562 * 21 20 18 23 23 C 1.34048 * 108.22449 * 0.02562 * 22 21 20 24 24 N 1.29931 * 109.24720 * 359.72197 * 23 22 21 25 25 C 1.47425 * 108.70709 * 358.94091 * 17 16 15 26 26 C 1.46900 * 111.26898 * 63.10825 * 12 11 10 27 27 C 1.47084 * 120.87592 * 151.59177 * 9 7 2 28 28 H 0.96998 * 120.00571 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.62668 * 111.45441 * 10 9 7 30 30 H 1.08992 * 109.78634 * 350.96804 * 10 9 7 31 31 H 1.09006 * 109.48750 * 186.20796 * 11 10 9 32 32 H 1.09003 * 109.48948 * 66.13318 * 11 10 9 33 33 H 1.09003 * 110.71820 * 271.93476 * 15 13 12 34 34 H 1.08996 * 110.72449 * 35.20961 * 15 13 12 35 35 H 1.09000 * 109.87774 * 218.39001 * 16 15 13 36 36 H 1.08999 * 109.88007 * 97.22263 * 16 15 13 37 37 H 1.07994 * 126.52638 * 0.02562 * 21 20 18 38 38 H 1.08001 * 125.37286 * 180.02562 * 23 22 21 39 39 H 1.09005 * 110.36730 * 265.29663 * 25 17 16 40 40 H 1.08995 * 110.46382 * 143.01687 * 25 17 16 41 41 H 1.08995 * 109.49643 * 56.85209 * 26 12 11 42 42 H 1.08996 * 109.49169 * 176.93323 * 26 12 11 43 43 H 1.09004 * 109.62862 * 248.54355 * 27 9 7 44 44 H 1.08994 * 109.63400 * 8.93324 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5133 2.0373 -1.3999 5 1 1.4398 2.6571 0.6843 6 1 3.5397 1.4447 0.7157 7 6 2.0102 -1.2022 0.0005 8 1 1.5163 -2.1108 0.3120 9 7 3.3211 -1.2361 -0.3939 10 6 3.8436 -0.2602 -1.3623 11 6 4.5658 -1.0215 -2.4790 12 7 5.5744 -1.9110 -1.8879 13 6 6.4052 -2.5303 -2.9292 14 1 5.8014 -3.1541 -3.5881 15 6 7.1794 -1.4545 -3.7358 16 6 8.4193 -2.2244 -4.2374 17 7 8.6082 -3.3769 -3.3444 18 6 9.5745 -4.3094 -3.4591 19 8 9.6351 -5.2237 -2.6596 20 6 10.5580 -4.2209 -4.5536 21 6 11.5818 -5.0852 -4.7926 22 8 12.2282 -4.6351 -5.8799 23 6 11.6159 -3.5190 -6.2996 24 7 10.6105 -3.2622 -5.5178 25 6 7.5651 -3.3441 -2.3031 26 6 4.9506 -2.9321 -1.0357 27 6 4.2441 -2.2491 0.1402 28 1 -0.4851 0.8400 -0.0004 29 1 4.5437 0.4108 -0.8645 30 1 3.0211 0.3168 -1.7850 31 1 5.0537 -0.3112 -3.1467 32 1 3.8437 -1.6133 -3.0416 33 1 6.5819 -1.0973 -4.5746 34 1 7.4742 -0.6268 -3.0909 35 1 9.2967 -1.5787 -4.2000 36 1 8.2535 -2.5695 -5.2580 37 1 11.8274 -5.9654 -4.2171 38 1 11.9090 -2.9293 -7.1556 39 1 7.9381 -2.8460 -1.4081 40 1 7.2337 -4.3545 -2.0637 41 1 4.2232 -3.4973 -1.6184 42 1 5.7174 -3.6075 -0.6567 43 1 4.9827 -1.7692 0.7824 44 1 3.6847 -2.9879 0.7141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051997099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:05 Heat of formation + Delta-G solvation = 45.476288 kcal Electronic energy + Delta-G solvation = -27132.965679 eV Core-core repulsion = 23281.740226 eV Total energy + Delta-G solvation = -3851.225453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.85304 -40.22418 -38.64824 -36.99020 -35.30782 -34.26401 -31.82165 -30.91146 -30.76705 -30.27326 -28.77276 -26.37394 -24.67705 -23.58423 -23.17384 -22.60707 -22.25313 -20.55535 -20.11324 -19.44497 -18.16780 -17.26266 -17.12420 -16.96068 -16.31654 -15.88178 -15.33991 -15.23378 -14.74667 -14.37071 -14.23716 -14.15635 -13.92897 -13.82323 -13.63858 -12.98683 -12.87784 -12.62453 -12.43000 -12.16101 -11.86974 -11.81186 -11.53524 -11.32349 -11.08320 -10.89922 -10.83341 -10.57737 -10.42241 -10.28458 -10.05545 -9.79951 -9.64086 -9.47359 -8.80552 -8.63686 -8.07674 -6.93289 -5.93937 -3.31077 0.70569 1.63967 2.23011 2.65678 2.99629 3.32364 3.49761 3.54595 3.56319 4.09111 4.18468 4.41244 4.54318 4.58554 4.59523 4.98098 5.02251 5.06239 5.16048 5.20631 5.27554 5.33830 5.48958 5.62642 5.62975 5.70240 5.73496 5.80573 5.87203 5.94985 5.97718 6.03103 6.08306 6.17033 6.23140 6.38670 6.59042 6.65959 6.88538 6.98043 7.23869 7.37531 7.41540 7.83811 7.97074 8.34113 8.94347 9.72548 10.12537 11.22222 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.002594 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.494079 B =10793.239524 C =11318.687189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.886 3.114 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.609 5.609 10 C 0.130 3.870 11 C 0.044 3.956 12 N -0.523 5.523 13 C 0.069 3.931 14 H 0.054 0.946 15 C -0.128 4.128 16 C 0.117 3.883 17 N -0.600 5.600 18 C 0.613 3.387 19 O -0.539 6.539 20 C -0.068 4.068 21 C 0.016 3.984 22 O -0.200 6.200 23 C 0.176 3.824 24 N -0.462 5.462 25 C 0.117 3.883 26 C 0.039 3.961 27 C 0.152 3.848 28 H 0.262 0.738 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.231 0.769 38 H 0.255 0.745 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.068 0.932 43 H 0.031 0.969 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.377 -6.537 -14.183 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.716 3.284 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.102 0.898 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.085 4.085 12 N -0.248 5.248 13 C -0.041 4.041 14 H 0.072 0.928 15 C -0.166 4.166 16 C -0.006 4.006 17 N -0.332 5.332 18 C 0.401 3.599 19 O -0.417 6.417 20 C -0.188 4.188 21 C -0.058 4.058 22 O -0.085 6.085 23 C -0.052 4.052 24 N -0.191 5.191 25 C -0.005 4.005 26 C -0.090 4.090 27 C 0.026 3.974 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.247 0.753 38 H 0.270 0.730 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.173 -6.190 -13.507 28.374 hybrid contribution 0.303 0.080 -0.636 0.709 sum 24.476 -6.111 -14.142 28.921 Atomic orbital electron populations 1.69820 1.05741 1.26570 1.53228 1.25314 0.95260 0.97666 0.99437 0.86923 0.79825 0.84385 0.77221 1.21510 1.23222 1.19535 1.18922 0.84241 0.94626 1.40926 0.89770 1.44413 1.07722 1.34314 1.46861 1.21443 0.96364 0.92061 0.89712 1.22648 0.92569 0.95721 0.97541 1.61978 1.23493 1.19796 1.19540 1.22741 0.93554 0.94850 0.92913 0.92808 1.22788 0.95309 0.98322 1.00164 1.22080 0.98270 0.86641 0.93641 1.48145 1.28886 1.25840 1.30359 1.16328 0.79524 0.81265 0.82802 1.90843 1.73816 1.33892 1.43103 1.21716 1.01081 0.96221 0.99774 1.25315 0.92423 1.00381 0.87669 1.84453 1.50248 1.36933 1.36866 1.28205 0.89711 0.86504 1.00799 1.70904 1.18942 1.25097 1.04206 1.22276 0.86581 1.00953 0.90732 1.22690 0.96935 0.93241 0.96150 1.21007 0.91938 0.91816 0.92641 0.92773 0.95024 0.90649 0.91399 0.94562 0.90043 0.89304 0.90658 0.90774 0.75307 0.72950 0.89821 0.90310 0.94728 0.91358 0.95149 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.99 13.97 55.49 0.78 -27.21 16 2 C 0.02 0.64 5.25 -17.43 -0.09 0.55 16 3 Si 0.89 22.46 24.31 -169.99 -4.13 18.33 16 4 H -0.29 -6.93 6.50 56.52 0.37 -6.56 16 5 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.27 -6.82 6.76 56.52 0.38 -6.43 16 7 C -0.26 -7.26 10.07 -15.06 -0.15 -7.41 16 8 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 9 N -0.61 -14.56 2.79 -172.01 -0.48 -15.04 16 10 C 0.13 2.83 4.35 -3.60 -0.02 2.81 16 11 C 0.04 0.77 5.48 -3.70 -0.02 0.75 16 12 N -0.52 -8.29 4.53 -223.78 -1.01 -9.30 16 13 C 0.07 0.90 2.71 -65.56 -0.18 0.72 16 14 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 15 C -0.13 -1.38 5.32 -24.89 -0.13 -1.51 16 16 C 0.12 1.21 5.52 -3.06 -0.02 1.20 16 17 N -0.60 -7.45 3.33 -171.79 -0.57 -8.03 16 18 C 0.61 8.04 7.85 -12.52 -0.10 7.94 16 19 O -0.54 -8.40 17.15 5.27 0.09 -8.31 16 20 C -0.07 -0.71 6.83 -83.02 -0.57 -1.28 16 21 C 0.02 0.12 11.95 29.96 0.36 0.48 16 22 O -0.20 -1.29 10.73 6.50 0.07 -1.22 16 23 C 0.18 0.96 13.19 51.96 0.69 1.65 16 24 N -0.46 -4.12 8.84 -11.48 -0.10 -4.22 16 25 C 0.12 1.51 5.34 -2.53 -0.01 1.49 16 26 C 0.04 0.65 5.48 -3.70 -0.02 0.63 16 27 C 0.15 3.03 6.69 -3.60 -0.02 3.00 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.03 0.70 6.98 -51.93 -0.36 0.34 16 30 H 0.08 1.78 4.72 -51.93 -0.25 1.53 16 31 H 0.07 1.02 6.85 -51.93 -0.36 0.66 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.80 7.94 -51.93 -0.41 0.38 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.76 7.76 -51.93 -0.40 0.36 16 36 H 0.07 0.75 7.63 -51.93 -0.40 0.36 16 37 H 0.23 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.25 0.09 8.06 -52.49 -0.42 -0.33 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.06 7.74 -51.93 -0.40 0.66 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.98 6.81 -51.93 -0.35 0.63 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.29 7.95 -51.93 -0.41 0.88 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -34.60 347.74 -6.75 -41.35 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -6.34 Total: -2.61 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -0.29 Total: 11.02 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -1.39 Total: -63.80 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.16 Total: -9.54 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.13 Total: 18.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.60 -6.75 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051997099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.826 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds