Wall clock time and date at job start Tue Mar 31 2020 12:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47240 * 269.25774 * 3 2 1 5 5 H 1.48500 * 109.47092 * 29.25815 * 3 2 1 6 6 H 1.48501 * 109.47173 * 149.25663 * 3 2 1 7 7 C 1.38814 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00032 * 340.57332 * 7 2 1 9 9 N 1.36937 * 119.99977 * 160.57433 * 7 2 1 10 10 C 1.47077 * 120.88263 * 331.61706 * 9 7 2 11 11 C 1.53241 * 108.51771 * 231.16045 * 10 9 7 12 12 N 1.46897 * 109.34166 * 306.16921 * 11 10 9 13 13 C 1.46901 * 110.99787 * 187.25485 * 12 11 10 14 14 H 1.08996 * 110.88548 * 297.64853 * 13 12 11 15 15 C 1.55154 * 111.00424 * 61.57200 * 13 12 11 16 16 C 1.54330 * 102.94183 * 153.57646 * 15 13 12 17 17 N 1.47016 * 107.26947 * 337.80734 * 16 15 13 18 18 C 1.34775 * 125.64788 * 178.91099 * 17 16 15 19 19 O 1.21609 * 120.00252 * 180.02562 * 18 17 16 20 20 C 1.47421 * 120.00017 * 0.03331 * 18 17 16 21 21 C 1.36092 * 126.44946 * 180.02562 * 20 18 17 22 22 O 1.34262 * 106.94795 * 180.02562 * 21 20 18 23 23 C 1.34048 * 108.22449 * 0.02562 * 22 21 20 24 24 N 1.29931 * 109.24720 * 359.72197 * 23 22 21 25 25 C 1.47425 * 108.70709 * 358.94091 * 17 16 15 26 26 C 1.46900 * 111.26898 * 63.10825 * 12 11 10 27 27 C 1.47084 * 120.87592 * 151.59177 * 9 7 2 28 28 H 0.96998 * 120.00571 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.62668 * 111.45441 * 10 9 7 30 30 H 1.08992 * 109.78634 * 350.96804 * 10 9 7 31 31 H 1.09006 * 109.48750 * 186.20796 * 11 10 9 32 32 H 1.09003 * 109.48948 * 66.13318 * 11 10 9 33 33 H 1.09003 * 110.71820 * 271.93476 * 15 13 12 34 34 H 1.08996 * 110.72449 * 35.20961 * 15 13 12 35 35 H 1.09000 * 109.87774 * 218.39001 * 16 15 13 36 36 H 1.08999 * 109.88007 * 97.22263 * 16 15 13 37 37 H 1.07994 * 126.52638 * 0.02562 * 21 20 18 38 38 H 1.08001 * 125.37286 * 180.02562 * 23 22 21 39 39 H 1.09005 * 110.36730 * 265.29663 * 25 17 16 40 40 H 1.08995 * 110.46382 * 143.01687 * 25 17 16 41 41 H 1.08995 * 109.49643 * 56.85209 * 26 12 11 42 42 H 1.08996 * 109.49169 * 176.93323 * 26 12 11 43 43 H 1.09004 * 109.62862 * 248.54355 * 27 9 7 44 44 H 1.08994 * 109.63400 * 8.93324 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5133 2.0373 -1.3999 5 1 1.4398 2.6571 0.6843 6 1 3.5397 1.4447 0.7157 7 6 2.0102 -1.2022 0.0005 8 1 1.5163 -2.1108 0.3120 9 7 3.3211 -1.2361 -0.3939 10 6 3.8436 -0.2602 -1.3623 11 6 4.5658 -1.0215 -2.4790 12 7 5.5744 -1.9110 -1.8879 13 6 6.4052 -2.5303 -2.9292 14 1 5.8014 -3.1541 -3.5881 15 6 7.1794 -1.4545 -3.7358 16 6 8.4193 -2.2244 -4.2374 17 7 8.6082 -3.3769 -3.3444 18 6 9.5745 -4.3094 -3.4591 19 8 9.6351 -5.2237 -2.6596 20 6 10.5580 -4.2209 -4.5536 21 6 11.5818 -5.0852 -4.7926 22 8 12.2282 -4.6351 -5.8799 23 6 11.6159 -3.5190 -6.2996 24 7 10.6105 -3.2622 -5.5178 25 6 7.5651 -3.3441 -2.3031 26 6 4.9506 -2.9321 -1.0357 27 6 4.2441 -2.2491 0.1402 28 1 -0.4851 0.8400 -0.0004 29 1 4.5437 0.4108 -0.8645 30 1 3.0211 0.3168 -1.7850 31 1 5.0537 -0.3112 -3.1467 32 1 3.8437 -1.6133 -3.0416 33 1 6.5819 -1.0973 -4.5746 34 1 7.4742 -0.6268 -3.0909 35 1 9.2967 -1.5787 -4.2000 36 1 8.2535 -2.5695 -5.2580 37 1 11.8274 -5.9654 -4.2171 38 1 11.9090 -2.9293 -7.1556 39 1 7.9381 -2.8460 -1.4081 40 1 7.2337 -4.3545 -2.0637 41 1 4.2232 -3.4973 -1.6184 42 1 5.7174 -3.6075 -0.6567 43 1 4.9827 -1.7692 0.7824 44 1 3.6847 -2.9879 0.7141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051997099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:04 Heat of formation + Delta-G solvation = 17.508506 kcal Electronic energy + Delta-G solvation = -27134.178453 eV Core-core repulsion = 23281.740226 eV Total energy + Delta-G solvation = -3852.438227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.38194 -41.23011 -39.92259 -38.25995 -36.06724 -35.67451 -33.68570 -32.22327 -31.84979 -31.24192 -29.90496 -27.92909 -25.77280 -24.89547 -24.33256 -23.63014 -23.24130 -21.73431 -21.03282 -20.84152 -18.99196 -18.83919 -17.90530 -17.79177 -17.50061 -17.12706 -16.60650 -16.05186 -15.86646 -15.79623 -15.63033 -15.50204 -15.36547 -14.81868 -14.58154 -14.48446 -14.18970 -13.85125 -13.79711 -13.70136 -13.48146 -12.82965 -12.62056 -12.46138 -12.41923 -12.18816 -12.10059 -11.88988 -11.77839 -11.67334 -11.50604 -11.42624 -11.36185 -10.71112 -10.26095 -9.73572 -9.43805 -8.88601 -8.16775 -5.50611 0.08086 1.07720 1.30651 1.43348 1.53337 1.62389 1.91315 2.16940 2.42209 2.81050 3.02257 3.08731 3.35376 3.38579 3.65376 3.77811 3.88120 4.03316 4.10551 4.22017 4.30307 4.33201 4.44466 4.47935 4.52881 4.54678 4.59214 4.65513 4.70493 4.83441 4.84309 4.88781 4.95290 4.97068 5.03208 5.12060 5.19950 5.27693 5.28732 5.83603 6.02686 6.07389 6.17441 6.29364 6.48794 6.90158 6.91335 7.60482 8.03522 9.03281 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.002594 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.494079 B =10793.239524 C =11318.687189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.036 4.036 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.312 1.312 6 H -0.266 1.266 7 C -0.250 4.250 8 H 0.049 0.951 9 N -0.624 5.624 10 C 0.124 3.876 11 C 0.056 3.944 12 N -0.523 5.523 13 C 0.073 3.927 14 H 0.053 0.947 15 C -0.120 4.120 16 C 0.126 3.874 17 N -0.604 5.604 18 C 0.607 3.393 19 O -0.576 6.576 20 C -0.102 4.102 21 C 0.031 3.969 22 O -0.198 6.198 23 C 0.199 3.801 24 N -0.492 5.492 25 C 0.121 3.879 26 C 0.050 3.950 27 C 0.148 3.852 28 H 0.262 0.738 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.248 0.752 38 H 0.302 0.698 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.093 0.907 43 H 0.037 0.963 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.713 -5.666 -16.522 32.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.231 4.231 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.241 1.241 6 H -0.191 1.191 7 C -0.380 4.380 8 H 0.067 0.933 9 N -0.349 5.349 10 C -0.001 4.001 11 C -0.073 4.073 12 N -0.248 5.248 13 C -0.036 4.036 14 H 0.070 0.930 15 C -0.158 4.158 16 C 0.004 3.996 17 N -0.335 5.335 18 C 0.397 3.603 19 O -0.456 6.456 20 C -0.220 4.220 21 C -0.044 4.044 22 O -0.083 6.083 23 C -0.030 4.030 24 N -0.221 5.221 25 C -0.002 4.002 26 C -0.079 4.079 27 C 0.023 3.977 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.043 0.957 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.264 0.736 38 H 0.317 0.683 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.111 0.889 43 H 0.055 0.945 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.551 -5.315 -15.875 32.238 hybrid contribution -0.658 -0.301 0.053 0.726 sum 26.893 -5.616 -15.822 31.703 Atomic orbital electron populations 1.69955 1.07459 1.27316 1.55743 1.25959 0.95888 1.01138 1.00066 0.85853 0.78165 0.79710 0.78235 1.19096 1.24062 1.19094 1.18846 0.86079 0.93411 1.39658 0.93324 1.44553 1.06871 1.35588 1.47925 1.21489 0.96043 0.92116 0.90428 1.22450 0.92693 0.96130 0.96055 1.61926 1.22800 1.19694 1.20428 1.22709 0.93019 0.95651 0.92227 0.92953 1.22793 0.95152 0.97509 1.00314 1.22082 0.98248 0.85903 0.93405 1.48239 1.28569 1.26331 1.30407 1.16760 0.79788 0.80675 0.83095 1.90807 1.74882 1.35267 1.44692 1.21475 1.01897 0.98272 1.00381 1.25646 0.91231 1.00054 0.87450 1.84504 1.50064 1.37335 1.36364 1.29273 0.87840 0.85489 1.00406 1.70839 1.20844 1.25515 1.04860 1.22139 0.86855 1.00298 0.90934 1.22504 0.97131 0.93241 0.95013 1.21151 0.91461 0.91021 0.94100 0.92897 0.94588 0.92585 0.88028 0.95732 0.88291 0.89234 0.90057 0.90217 0.73576 0.68332 0.90360 0.91280 0.95911 0.88881 0.94496 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.74 13.97 21.65 0.30 -60.44 16 2 C -0.04 -2.11 5.25 84.86 0.45 -1.67 16 3 Si 0.95 46.76 24.31 68.60 1.67 48.42 16 4 H -0.26 -11.94 6.50 99.48 0.65 -11.29 16 5 H -0.31 -15.59 7.11 99.48 0.71 -14.89 16 6 H -0.27 -12.75 6.76 99.48 0.67 -12.07 16 7 C -0.25 -14.43 10.07 84.03 0.85 -13.59 16 8 H 0.05 3.08 8.06 -2.91 -0.02 3.05 16 9 N -0.62 -29.84 2.79 -698.11 -1.95 -31.79 16 10 C 0.12 5.21 4.35 86.35 0.38 5.58 16 11 C 0.06 1.82 5.48 86.38 0.47 2.29 16 12 N -0.52 -15.47 4.53 -861.90 -3.90 -19.38 16 13 C 0.07 1.74 2.71 46.31 0.13 1.86 16 14 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 15 C -0.12 -2.21 5.32 31.78 0.17 -2.04 16 16 C 0.13 2.30 5.52 86.73 0.48 2.78 16 17 N -0.60 -14.20 3.33 -815.66 -2.71 -16.91 16 18 C 0.61 15.51 7.85 86.66 0.68 16.19 16 19 O -0.58 -18.01 17.15 -4.06 -0.07 -18.07 16 20 C -0.10 -1.96 6.83 40.41 0.28 -1.69 16 21 C 0.03 0.41 11.95 67.32 0.80 1.22 16 22 O -0.20 -1.94 10.73 0.35 0.00 -1.94 16 23 C 0.20 1.44 13.19 130.52 1.72 3.16 16 24 N -0.49 -7.47 8.84 -305.15 -2.70 -10.17 16 25 C 0.12 2.96 5.34 86.86 0.46 3.42 16 26 C 0.05 1.62 5.48 86.39 0.47 2.09 16 27 C 0.15 5.83 6.69 86.35 0.58 6.41 16 28 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 29 H 0.04 1.50 6.98 -2.39 -0.02 1.48 16 30 H 0.06 2.56 4.72 -2.39 -0.01 2.55 16 31 H 0.10 2.65 6.85 -2.38 -0.02 2.63 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 1.52 7.94 -2.39 -0.02 1.50 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.43 7.76 -2.39 -0.02 1.41 16 36 H 0.08 1.40 7.63 -2.39 -0.02 1.38 16 37 H 0.25 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.30 -1.33 8.06 -2.91 -0.02 -1.35 16 39 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.07 1.82 7.74 -2.39 -0.02 1.80 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 2.55 6.81 -2.39 -0.02 2.53 16 43 H 0.04 1.42 8.14 -2.38 -0.02 1.41 16 44 H 0.06 2.38 7.95 -2.39 -0.02 2.36 16 Total: -1.00 -77.59 347.74 -0.53 -78.12 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.91 Total: 6.13 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 7.91 Total: 26.03 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -10.96 Total: -138.69 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.07 Total: -20.02 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.42 kcal Total: -77.59 -0.53 -78.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051997099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.628 kcal (2) G-P(sol) polarization free energy of solvation -77.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds