Wall clock time and date at job start Tue Mar 31 2020 12:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99880 * 2 1 4 4 H 1.48502 * 109.47013 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46822 * 299.99487 * 3 2 1 6 6 H 1.48494 * 109.47296 * 59.99430 * 3 2 1 7 7 C 1.38809 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00512 * 193.34995 * 7 2 1 9 9 N 1.36937 * 120.00019 * 13.35393 * 7 2 1 10 10 C 1.47080 * 120.88605 * 209.19939 * 9 7 2 11 11 C 1.53238 * 108.52317 * 231.16094 * 10 9 7 12 12 N 1.46892 * 109.33813 * 306.16886 * 11 10 9 13 13 C 1.46907 * 110.99724 * 187.25210 * 12 11 10 14 14 H 1.08998 * 110.88699 * 298.17872 * 13 12 11 15 15 C 1.55156 * 111.00134 * 62.09842 * 13 12 11 16 16 C 1.54340 * 103.01763 * 153.37925 * 15 13 12 17 17 N 1.47020 * 107.26774 * 338.14408 * 16 15 13 18 18 C 1.34771 * 125.64699 * 178.85343 * 17 16 15 19 19 O 1.21692 * 119.99750 * 179.68859 * 18 17 16 20 20 C 1.46717 * 120.00319 * 359.68098 * 18 17 16 21 21 C 1.36344 * 126.64536 * 180.02562 * 20 18 17 22 22 N 1.33693 * 107.45487 * 180.02562 * 21 20 18 23 23 C 1.30627 * 108.99457 * 359.97438 * 22 21 20 24 24 O 1.33663 * 109.15384 * 0.02562 * 23 22 21 25 25 C 1.47427 * 108.70107 * 358.57948 * 17 16 15 26 26 C 1.46897 * 111.27079 * 63.10905 * 12 11 10 27 27 C 1.47083 * 120.88186 * 29.17306 * 9 7 2 28 28 H 0.96994 * 119.99982 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.62834 * 111.44850 * 10 9 7 30 30 H 1.09003 * 109.78551 * 350.96785 * 10 9 7 31 31 H 1.09001 * 109.49128 * 186.20391 * 11 10 9 32 32 H 1.08996 * 109.49129 * 66.12925 * 11 10 9 33 33 H 1.08997 * 110.72041 * 271.93619 * 15 13 12 34 34 H 1.09002 * 110.72310 * 35.21585 * 15 13 12 35 35 H 1.09000 * 109.99069 * 218.65766 * 16 15 13 36 36 H 1.09007 * 109.77384 * 97.49661 * 16 15 13 37 37 H 1.08001 * 126.27488 * 0.02562 * 21 20 18 38 38 H 1.07995 * 125.42387 * 179.97438 * 23 22 21 39 39 H 1.08997 * 110.36137 * 143.19850 * 25 17 16 40 40 H 1.09001 * 110.36767 * 265.41082 * 25 17 16 41 41 H 1.08996 * 109.49812 * 56.84835 * 26 12 11 42 42 H 1.09001 * 109.49492 * 176.93694 * 26 12 11 43 43 H 1.08997 * 109.63333 * 248.55064 * 27 9 7 44 44 H 1.09006 * 109.62666 * 8.94131 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0684 -1.2147 0.2165 9 7 1.3534 -2.3721 -0.2728 10 6 1.8094 -3.6463 0.3031 11 6 1.9514 -4.6692 -0.8291 12 7 0.6906 -4.7425 -1.5792 13 6 0.7263 -5.8325 -2.5636 14 1 1.5145 -5.6671 -3.2980 15 6 0.8958 -7.2074 -1.8649 16 6 0.2428 -8.1872 -2.8627 17 7 -0.6761 -7.4061 -3.7035 18 6 -1.4231 -7.8938 -4.7136 19 8 -2.1562 -7.1524 -5.3412 20 6 -1.3525 -9.3185 -5.0568 21 6 -2.0436 -9.9525 -6.0464 22 7 -1.6899 -11.2415 -6.0203 23 6 -0.8179 -11.4238 -5.0648 24 8 -0.5888 -10.2582 -4.4520 25 6 -0.6498 -6.0021 -3.2544 26 6 0.3792 -3.4603 -2.2248 27 6 0.1727 -2.3879 -1.1498 28 1 -0.4850 0.8400 -0.0004 29 1 1.0783 -4.0026 1.0289 30 1 2.7731 -3.5060 0.7928 31 1 2.1818 -5.6479 -0.4082 32 1 2.7553 -4.3621 -1.4980 33 1 1.9511 -7.4417 -1.7254 34 1 0.3667 -7.2236 -0.9120 35 1 -0.3110 -8.9552 -2.3226 36 1 1.0113 -8.6486 -3.4830 37 1 -2.7478 -9.4968 -6.7269 38 1 -0.3564 -12.3663 -4.8101 39 1 -0.7312 -5.3293 -4.1080 40 1 -1.4572 -5.8151 -2.5464 41 1 1.2050 -3.1700 -2.8743 42 1 -0.5308 -3.5623 -2.8162 43 1 -0.7157 -2.6232 -0.5637 44 1 0.0531 -1.4120 -1.6204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052059907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:51 Heat of formation + Delta-G solvation = 40.245829 kcal Electronic energy + Delta-G solvation = -27109.518905 eV Core-core repulsion = 23258.066643 eV Total energy + Delta-G solvation = -3851.452263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.81553 -40.26100 -38.56762 -36.94248 -35.32756 -34.21332 -31.85956 -30.97731 -30.71838 -29.69852 -28.67233 -26.21165 -24.69078 -23.32251 -23.13724 -22.84706 -22.04970 -20.57381 -20.19889 -19.19187 -18.15348 -17.36349 -17.33161 -17.01554 -16.31142 -15.79026 -15.03078 -14.83187 -14.67385 -14.43462 -14.12596 -14.00011 -13.80872 -13.52233 -13.44621 -13.20260 -12.92789 -12.73419 -12.41025 -11.92755 -11.83897 -11.48379 -11.27791 -11.25670 -11.05693 -10.96553 -10.77799 -10.56953 -10.44734 -10.31544 -10.06242 -9.78506 -9.61707 -9.56270 -8.92551 -8.53881 -7.95857 -6.65506 -5.79836 -3.24882 0.45005 2.01964 2.04567 2.67460 2.77869 3.35574 3.43291 3.45108 3.70403 4.12731 4.15799 4.47642 4.50107 4.54074 4.56926 4.87763 5.07084 5.11336 5.16392 5.23555 5.38545 5.38947 5.42057 5.62528 5.73555 5.77106 5.77560 5.84886 5.86076 5.89629 6.07470 6.11205 6.20747 6.29338 6.48826 6.65289 6.88784 7.00253 7.15435 7.20643 7.49881 7.59710 7.66557 7.67831 7.79005 8.43319 9.19893 9.81986 10.41273 11.28830 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035229 B = 0.002476 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.620207 B =11303.943928 C =11867.571247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.520 5.520 13 C 0.069 3.931 14 H 0.052 0.948 15 C -0.123 4.123 16 C 0.104 3.896 17 N -0.606 5.606 18 C 0.619 3.381 19 O -0.515 6.515 20 C -0.099 4.099 21 C 0.050 3.950 22 N -0.494 5.494 23 C 0.195 3.805 24 O -0.188 6.188 25 C 0.116 3.884 26 C 0.032 3.968 27 C 0.179 3.821 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.198 0.802 38 H 0.256 0.744 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -22.437 -7.577 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.084 4.084 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.070 0.930 15 C -0.161 4.161 16 C -0.019 4.019 17 N -0.338 5.338 18 C 0.406 3.594 19 O -0.392 6.392 20 C -0.155 4.155 21 C -0.093 4.093 22 N -0.223 5.223 23 C -0.030 4.030 24 O -0.073 6.073 25 C -0.005 4.005 26 C -0.097 4.097 27 C 0.053 3.947 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.214 0.786 38 H 0.272 0.728 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.277 -22.457 -7.942 23.821 hybrid contribution 1.358 1.310 -0.155 1.893 sum 1.081 -21.147 -8.098 22.670 Atomic orbital electron populations 1.69994 1.05205 1.25412 1.54186 1.25114 0.95385 0.98387 1.00715 0.86210 0.79242 0.83928 0.77303 1.20317 1.21568 1.21651 1.19209 0.91436 0.84218 1.43360 0.91733 1.44097 1.32702 1.02405 1.52672 1.20973 0.97869 0.86460 0.92483 1.22637 0.89102 0.99597 0.97081 1.62028 1.33934 1.04039 1.24565 1.22741 0.95300 0.92367 0.93684 0.93001 1.22721 1.01377 0.93116 0.98871 1.22153 0.92412 0.94660 0.92706 1.48290 1.42341 1.11304 1.31906 1.15927 0.80442 0.83200 0.79849 1.90930 1.39749 1.56456 1.52076 1.23163 1.00941 0.90886 1.00486 1.23619 0.99608 0.88488 0.97563 1.70472 1.13706 1.17835 1.20246 1.28440 0.95372 0.89865 0.89277 1.84590 1.53429 1.18053 1.51251 1.22347 0.98432 0.80438 0.99331 1.22975 0.98810 0.89773 0.98148 1.20857 0.88864 0.95683 0.89285 0.93603 0.95657 0.92598 0.91809 0.95367 0.89944 0.89024 0.90826 0.91126 0.78558 0.72839 0.90028 0.89422 0.95506 0.91894 0.95456 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 11.11 55.49 0.62 -25.42 16 2 C 0.00 0.07 5.01 -17.43 -0.09 -0.02 16 3 Si 0.90 21.53 29.57 -169.99 -5.03 16.50 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.85 9.63 -15.06 -0.15 -6.99 16 8 H 0.06 1.72 7.86 -52.48 -0.41 1.31 16 9 N -0.60 -14.74 3.03 -172.00 -0.52 -15.26 16 10 C 0.15 3.03 6.69 -3.60 -0.02 3.01 16 11 C 0.05 0.74 5.48 -3.71 -0.02 0.72 16 12 N -0.52 -8.47 4.53 -223.78 -1.01 -9.49 16 13 C 0.07 0.89 2.72 -65.56 -0.18 0.71 16 14 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 15 C -0.12 -1.22 5.34 -24.89 -0.13 -1.35 16 16 C 0.10 0.96 5.56 -3.06 -0.02 0.94 16 17 N -0.61 -7.26 3.33 -172.03 -0.57 -7.83 16 18 C 0.62 8.05 7.82 -12.84 -0.10 7.95 16 19 O -0.51 -8.21 17.15 5.20 0.09 -8.12 16 20 C -0.10 -1.06 6.98 -36.84 -0.26 -1.32 16 21 C 0.05 0.50 11.66 -17.42 -0.20 0.30 16 22 N -0.49 -4.59 11.26 -14.67 -0.17 -4.75 16 23 C 0.20 1.22 13.21 52.25 0.69 1.91 16 24 O -0.19 -1.55 8.51 4.40 0.04 -1.52 16 25 C 0.12 1.53 5.31 -2.53 -0.01 1.52 16 26 C 0.03 0.60 5.48 -3.70 -0.02 0.58 16 27 C 0.18 4.23 5.38 -3.60 -0.02 4.21 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 31 H 0.06 0.86 6.87 -51.93 -0.36 0.51 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.61 7.83 -51.93 -0.41 0.20 16 36 H 0.07 0.58 7.69 -51.93 -0.40 0.18 16 37 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.26 0.19 8.06 -52.49 -0.42 -0.23 16 39 H 0.08 1.15 7.74 -51.93 -0.40 0.74 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.08 6.79 -51.93 -0.35 0.73 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 2.34 6.19 -51.93 -0.32 2.02 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -32.74 354.36 -8.16 -40.90 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.42 Total: -2.52 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -0.53 Total: 12.17 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -1.65 Total: -62.75 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.13 Total: -9.64 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.74 -8.16 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052059907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.148 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds