Wall clock time and date at job start Tue Mar 31 2020 12:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99880 * 2 1 4 4 H 1.48502 * 109.47013 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46822 * 299.99487 * 3 2 1 6 6 H 1.48494 * 109.47296 * 59.99430 * 3 2 1 7 7 C 1.38809 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00512 * 193.34995 * 7 2 1 9 9 N 1.36937 * 120.00019 * 13.35393 * 7 2 1 10 10 C 1.47080 * 120.88605 * 209.19939 * 9 7 2 11 11 C 1.53238 * 108.52317 * 231.16094 * 10 9 7 12 12 N 1.46892 * 109.33813 * 306.16886 * 11 10 9 13 13 C 1.46907 * 110.99724 * 187.25210 * 12 11 10 14 14 H 1.08998 * 110.88699 * 298.17872 * 13 12 11 15 15 C 1.55156 * 111.00134 * 62.09842 * 13 12 11 16 16 C 1.54340 * 103.01763 * 153.37925 * 15 13 12 17 17 N 1.47020 * 107.26774 * 338.14408 * 16 15 13 18 18 C 1.34771 * 125.64699 * 178.85343 * 17 16 15 19 19 O 1.21692 * 119.99750 * 179.68859 * 18 17 16 20 20 C 1.46717 * 120.00319 * 359.68098 * 18 17 16 21 21 C 1.36344 * 126.64536 * 180.02562 * 20 18 17 22 22 N 1.33693 * 107.45487 * 180.02562 * 21 20 18 23 23 C 1.30627 * 108.99457 * 359.97438 * 22 21 20 24 24 O 1.33663 * 109.15384 * 0.02562 * 23 22 21 25 25 C 1.47427 * 108.70107 * 358.57948 * 17 16 15 26 26 C 1.46897 * 111.27079 * 63.10905 * 12 11 10 27 27 C 1.47083 * 120.88186 * 29.17306 * 9 7 2 28 28 H 0.96994 * 119.99982 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.62834 * 111.44850 * 10 9 7 30 30 H 1.09003 * 109.78551 * 350.96785 * 10 9 7 31 31 H 1.09001 * 109.49128 * 186.20391 * 11 10 9 32 32 H 1.08996 * 109.49129 * 66.12925 * 11 10 9 33 33 H 1.08997 * 110.72041 * 271.93619 * 15 13 12 34 34 H 1.09002 * 110.72310 * 35.21585 * 15 13 12 35 35 H 1.09000 * 109.99069 * 218.65766 * 16 15 13 36 36 H 1.09007 * 109.77384 * 97.49661 * 16 15 13 37 37 H 1.08001 * 126.27488 * 0.02562 * 21 20 18 38 38 H 1.07995 * 125.42387 * 179.97438 * 23 22 21 39 39 H 1.08997 * 110.36137 * 143.19850 * 25 17 16 40 40 H 1.09001 * 110.36767 * 265.41082 * 25 17 16 41 41 H 1.08996 * 109.49812 * 56.84835 * 26 12 11 42 42 H 1.09001 * 109.49492 * 176.93694 * 26 12 11 43 43 H 1.08997 * 109.63333 * 248.55064 * 27 9 7 44 44 H 1.09006 * 109.62666 * 8.94131 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0684 -1.2147 0.2165 9 7 1.3534 -2.3721 -0.2728 10 6 1.8094 -3.6463 0.3031 11 6 1.9514 -4.6692 -0.8291 12 7 0.6906 -4.7425 -1.5792 13 6 0.7263 -5.8325 -2.5636 14 1 1.5145 -5.6671 -3.2980 15 6 0.8958 -7.2074 -1.8649 16 6 0.2428 -8.1872 -2.8627 17 7 -0.6761 -7.4061 -3.7035 18 6 -1.4231 -7.8938 -4.7136 19 8 -2.1562 -7.1524 -5.3412 20 6 -1.3525 -9.3185 -5.0568 21 6 -2.0436 -9.9525 -6.0464 22 7 -1.6899 -11.2415 -6.0203 23 6 -0.8179 -11.4238 -5.0648 24 8 -0.5888 -10.2582 -4.4520 25 6 -0.6498 -6.0021 -3.2544 26 6 0.3792 -3.4603 -2.2248 27 6 0.1727 -2.3879 -1.1498 28 1 -0.4850 0.8400 -0.0004 29 1 1.0783 -4.0026 1.0289 30 1 2.7731 -3.5060 0.7928 31 1 2.1818 -5.6479 -0.4082 32 1 2.7553 -4.3621 -1.4980 33 1 1.9511 -7.4417 -1.7254 34 1 0.3667 -7.2236 -0.9120 35 1 -0.3110 -8.9552 -2.3226 36 1 1.0113 -8.6486 -3.4830 37 1 -2.7478 -9.4968 -6.7269 38 1 -0.3564 -12.3663 -4.8101 39 1 -0.7312 -5.3293 -4.1080 40 1 -1.4572 -5.8151 -2.5464 41 1 1.2050 -3.1700 -2.8743 42 1 -0.5308 -3.5623 -2.8162 43 1 -0.7157 -2.6232 -0.5637 44 1 0.0531 -1.4120 -1.6204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052059907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:50 Heat of formation + Delta-G solvation = 14.629779 kcal Electronic energy + Delta-G solvation = -27110.629701 eV Core-core repulsion = 23258.066643 eV Total energy + Delta-G solvation = -3852.563058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.45393 -41.25860 -39.83665 -38.22977 -36.10394 -35.71753 -33.44071 -32.24915 -31.80123 -31.03865 -29.80541 -27.82365 -25.76409 -24.57967 -24.49697 -23.71357 -23.19141 -21.67949 -21.09268 -20.81578 -18.95362 -18.82865 -18.04707 -18.01870 -17.50280 -16.85278 -16.69902 -16.01103 -15.78642 -15.52615 -15.30983 -15.26174 -15.18576 -14.91106 -14.63124 -14.56736 -14.01412 -13.97394 -13.66813 -13.17263 -13.11024 -12.74292 -12.58054 -12.57876 -12.52824 -12.21804 -12.01205 -11.97544 -11.91911 -11.78636 -11.53525 -11.43674 -11.34077 -10.60569 -10.32248 -9.82341 -9.32885 -8.64637 -7.87385 -5.35605 -0.26364 1.27744 1.39712 1.45533 1.47017 1.57407 1.86326 1.90990 2.50000 2.93098 3.19886 3.29093 3.32846 3.60363 3.68846 3.70274 3.84670 4.03820 4.17546 4.25790 4.33986 4.37308 4.42280 4.50193 4.57205 4.58755 4.63807 4.70870 4.75463 4.83922 4.90167 4.93160 5.05061 5.08063 5.20798 5.21243 5.23571 5.38853 5.61936 5.69608 6.09765 6.16781 6.24226 6.39141 6.48014 6.72956 7.14074 7.84293 8.38837 9.19245 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035229 B = 0.002476 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.620207 B =11303.943928 C =11867.571247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.615 5.615 10 C 0.143 3.857 11 C 0.058 3.942 12 N -0.526 5.526 13 C 0.072 3.928 14 H 0.055 0.945 15 C -0.112 4.112 16 C 0.106 3.894 17 N -0.606 5.606 18 C 0.616 3.384 19 O -0.559 6.559 20 C -0.121 4.121 21 C 0.052 3.948 22 N -0.528 5.528 23 C 0.229 3.771 24 O -0.185 6.185 25 C 0.119 3.881 26 C 0.050 3.950 27 C 0.188 3.812 28 H 0.250 0.750 29 H 0.018 0.982 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.198 0.802 38 H 0.310 0.690 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.020 0.980 42 H 0.074 0.926 43 H -0.001 1.001 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -25.688 -7.523 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.391 4.391 8 H 0.086 0.914 9 N -0.339 5.339 10 C 0.017 3.983 11 C -0.071 4.071 12 N -0.251 5.251 13 C -0.037 4.037 14 H 0.073 0.927 15 C -0.150 4.150 16 C -0.016 4.016 17 N -0.338 5.338 18 C 0.405 3.595 19 O -0.440 6.440 20 C -0.176 4.176 21 C -0.090 4.090 22 N -0.256 5.256 23 C 0.005 3.995 24 O -0.071 6.071 25 C -0.004 4.004 26 C -0.079 4.079 27 C 0.062 3.938 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.042 0.958 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.215 0.785 38 H 0.324 0.676 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.093 0.907 43 H 0.017 0.983 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.854 -25.762 -7.875 27.003 hybrid contribution 0.711 2.156 -0.143 2.275 sum 2.565 -23.606 -8.019 25.062 Atomic orbital electron populations 1.70162 1.06680 1.25736 1.55756 1.25883 0.96144 1.01590 1.01174 0.85189 0.78618 0.79812 0.76720 1.18935 1.21836 1.21894 1.19551 0.91813 0.85407 1.42313 0.91414 1.44387 1.32672 1.03421 1.53458 1.21162 0.97639 0.85574 0.93900 1.22485 0.88787 1.00224 0.95602 1.61924 1.34171 1.03474 1.25562 1.22731 0.94965 0.92675 0.93347 0.92705 1.22730 1.03120 0.90668 0.98504 1.22321 0.92382 0.94406 0.92467 1.48345 1.42542 1.10958 1.31943 1.16199 0.79806 0.84068 0.79449 1.90895 1.41580 1.57907 1.53585 1.22591 1.02966 0.90282 1.01810 1.23759 0.99084 0.89061 0.97118 1.70524 1.15602 1.17258 1.22169 1.29696 0.92725 0.90369 0.86706 1.84582 1.53090 1.18219 1.51243 1.22173 0.98386 0.81389 0.98479 1.22584 0.99203 0.89935 0.96221 1.20569 0.87824 0.95624 0.89824 0.94131 0.96440 0.91956 0.87668 0.95758 0.87325 0.89151 0.89291 0.89319 0.78530 0.67571 0.91632 0.90705 0.96186 0.90746 0.98333 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.09 11.11 21.65 0.24 -55.85 16 2 C -0.05 -2.96 5.01 84.86 0.42 -2.54 16 3 Si 0.97 45.05 29.57 68.60 2.03 47.08 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.26 -14.33 9.63 84.03 0.81 -13.52 16 8 H 0.07 3.60 7.86 -2.91 -0.02 3.58 16 9 N -0.62 -30.99 3.03 -698.10 -2.11 -33.11 16 10 C 0.14 5.71 6.69 86.35 0.58 6.29 16 11 C 0.06 1.77 5.48 86.38 0.47 2.24 16 12 N -0.53 -16.49 4.53 -861.92 -3.90 -20.40 16 13 C 0.07 1.72 2.72 46.31 0.13 1.84 16 14 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 15 C -0.11 -1.80 5.34 31.79 0.17 -1.63 16 16 C 0.11 1.59 5.56 86.74 0.48 2.07 16 17 N -0.61 -13.77 3.33 -816.41 -2.71 -16.49 16 18 C 0.62 15.86 7.82 86.46 0.68 16.54 16 19 O -0.56 -18.49 17.15 -4.32 -0.07 -18.56 16 20 C -0.12 -2.41 6.98 24.05 0.17 -2.24 16 21 C 0.05 1.00 11.66 83.97 0.98 1.98 16 22 N -0.53 -8.51 11.26 -315.09 -3.55 -12.06 16 23 C 0.23 1.91 13.21 130.42 1.72 3.63 16 24 O -0.19 -2.43 8.51 -7.16 -0.06 -2.50 16 25 C 0.12 3.08 5.31 86.85 0.46 3.54 16 26 C 0.05 1.90 5.48 86.38 0.47 2.37 16 27 C 0.19 9.23 5.38 86.35 0.46 9.70 16 28 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 29 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 2.37 7.96 -2.39 -0.02 2.35 16 31 H 0.11 2.39 6.87 -2.39 -0.02 2.38 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 1.25 7.94 -2.39 -0.02 1.23 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.12 7.83 -2.39 -0.02 1.10 16 36 H 0.09 1.07 7.69 -2.38 -0.02 1.05 16 37 H 0.20 3.50 8.06 -2.91 -0.02 3.47 16 38 H 0.31 -1.40 8.06 -2.91 -0.02 -1.42 16 39 H 0.07 1.90 7.74 -2.39 -0.02 1.88 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 2.63 6.79 -2.39 -0.02 2.61 16 43 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.05 2.99 6.19 -2.38 -0.01 2.97 16 Total: -1.00 -75.14 354.36 -1.13 -76.28 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.00 Total: 5.33 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 8.01 Total: 30.28 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -12.04 Total: -137.91 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.13 Total: -21.06 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -75.14 -1.13 -76.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052059907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.908 kcal (2) G-P(sol) polarization free energy of solvation -75.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds