Wall clock time and date at job start Tue Mar 31 2020 12:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48498 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46837 * 299.99326 * 3 2 1 6 6 H 1.48492 * 109.47355 * 59.99626 * 3 2 1 7 7 C 1.38814 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99535 * 195.67925 * 7 2 1 9 9 N 1.36926 * 119.99986 * 15.68008 * 7 2 1 10 10 C 1.47613 * 118.64394 * 26.46260 * 9 7 2 11 11 C 1.53940 * 112.14543 * 137.88548 * 10 9 7 12 12 C 1.50880 * 110.09638 * 319.43405 * 11 10 9 13 13 C 1.52567 * 109.36103 * 91.88475 * 12 11 10 14 14 H 1.09009 * 108.38967 * 36.15575 * 13 12 11 15 15 N 1.46494 * 108.51573 * 153.73254 * 13 12 11 16 16 C 1.34773 * 120.00422 * 209.76886 * 15 13 12 17 17 O 1.21576 * 119.99953 * 359.97438 * 16 15 13 18 18 C 1.47718 * 120.00287 * 180.27664 * 16 15 13 19 19 C 1.40945 * 125.97648 * 179.72012 * 18 16 15 20 20 C 1.36176 * 107.95071 * 180.09315 * 19 18 16 21 21 N 1.35801 * 107.31468 * 359.61646 * 20 19 18 22 22 N 1.31846 * 125.97437 * 359.41611 * 18 16 15 23 23 C 1.47423 * 108.07111 * 180.77070 * 21 20 19 24 24 C 1.54647 * 102.36145 * 15.19301 * 23 21 20 25 25 O 1.36125 * 140.87780 * 179.13254 * 20 19 18 26 26 C 1.47090 * 114.32779 * 274.99278 * 13 12 11 27 27 C 1.44575 * 118.64771 * 206.47569 * 9 7 2 28 28 H 0.97006 * 119.99951 * 0.02562 * 1 2 3 29 29 H 1.09009 * 108.94114 * 258.57136 * 10 9 7 30 30 H 1.08999 * 108.94553 * 17.28243 * 10 9 7 31 31 H 1.09008 * 109.36795 * 79.62452 * 11 10 9 32 32 H 1.09000 * 109.37030 * 199.36895 * 11 10 9 33 33 H 1.09000 * 109.48772 * 331.91758 * 12 11 10 34 34 H 1.09003 * 109.48978 * 211.85064 * 12 11 10 35 35 H 0.97008 * 119.99863 * 29.76543 * 15 13 12 36 36 H 1.07996 * 126.02650 * 0.09851 * 19 18 16 37 37 H 1.08997 * 110.83088 * 133.41329 * 23 21 20 38 38 H 1.09008 * 110.82409 * 256.77786 * 23 21 20 39 39 H 1.08995 * 110.85293 * 93.36506 * 24 23 21 40 40 H 1.09000 * 110.85470 * 216.79837 * 24 23 21 41 41 H 1.08999 * 109.33282 * 183.06070 * 26 13 12 42 42 H 1.09008 * 109.32631 * 302.71136 * 26 13 12 43 43 H 1.08993 * 109.45482 * 150.66847 * 27 9 7 44 44 H 1.08999 * 109.42439 * 30.72981 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0601 -1.2193 0.2533 9 7 1.3638 -2.3661 -0.3194 10 6 0.1792 -2.2992 -1.1976 11 6 0.1707 -3.4252 -2.2473 12 6 1.5617 -3.6363 -2.7924 13 6 2.2703 -4.7076 -1.9690 14 1 1.5373 -5.4616 -1.6819 15 7 3.2858 -5.3452 -2.8106 16 6 3.6240 -6.6327 -2.6002 17 8 3.0867 -7.2650 -1.7116 18 6 4.6524 -7.2738 -3.4449 19 6 5.1048 -8.6040 -3.3326 20 6 6.0536 -8.8067 -4.2881 21 7 6.1843 -7.6459 -4.9806 22 7 5.3036 -6.7035 -4.4394 23 6 7.1956 -7.8526 -6.0331 24 6 7.3176 -9.3936 -6.0769 25 8 6.8945 -9.7706 -4.7536 26 6 2.9227 -4.2030 -0.7511 27 6 1.8695 -3.6098 0.2170 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7196 -2.3786 -0.5859 30 1 0.1734 -1.3379 -1.7114 31 1 -0.1802 -4.3478 -1.7849 32 1 -0.4980 -3.1531 -3.0639 33 1 2.1211 -2.7027 -2.7330 34 1 1.4999 -3.9582 -3.8319 35 1 3.7148 -4.8407 -3.5195 36 1 4.7597 -9.3338 -2.6152 37 1 6.8450 -7.4642 -6.9893 38 1 8.1442 -7.3934 -5.7546 39 1 6.6528 -9.8142 -6.8313 40 1 8.3488 -9.6963 -6.2589 41 1 3.4466 -5.0211 -0.2569 42 1 3.6389 -3.4267 -1.0207 43 1 1.0471 -4.3152 0.3350 44 1 2.3313 -3.4251 1.1868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052448666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:25 Heat of formation + Delta-G solvation = 60.887232 kcal Electronic energy + Delta-G solvation = -26971.891678 eV Core-core repulsion = 23121.334494 eV Total energy + Delta-G solvation = -3850.557184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.61276 -39.98521 -38.72788 -37.45891 -34.78150 -33.67366 -32.47138 -31.58569 -30.61026 -29.59784 -29.12921 -26.15934 -24.96884 -23.89662 -23.36761 -22.51407 -21.68157 -20.16726 -19.90219 -19.14376 -18.09554 -17.33720 -16.73479 -16.62619 -16.04742 -15.75152 -15.39417 -15.06129 -14.96504 -14.39898 -14.11464 -13.96971 -13.76348 -13.49019 -13.27068 -13.16448 -12.78844 -12.71556 -12.47634 -11.92169 -11.73274 -11.35917 -11.24174 -11.17916 -10.82985 -10.68004 -10.42825 -10.23825 -10.08751 -9.95303 -9.72858 -9.69456 -9.54849 -9.52741 -8.83129 -8.78708 -8.35395 -6.60906 -5.73236 -3.16416 1.09463 1.49163 1.86205 2.40452 3.26968 3.39160 3.39536 3.47501 3.49326 3.49471 4.03771 4.14358 4.44371 4.54184 4.57695 4.72714 4.93791 5.01923 5.23567 5.29329 5.39499 5.51523 5.62134 5.67589 5.78771 6.07304 6.10315 6.11546 6.23785 6.38182 6.49237 6.53057 6.55958 6.70699 6.81509 6.84884 6.89570 6.97438 7.09492 7.15390 7.49123 7.70504 7.76591 7.88065 8.28901 8.52475 9.29630 9.96810 10.41998 11.34114 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.002609 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.234014 B =10730.580742 C =11207.097285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.140 4.140 12 C -0.112 4.112 13 C 0.161 3.839 14 H 0.078 0.922 15 N -0.709 5.709 16 C 0.598 3.402 17 O -0.524 6.524 18 C 0.060 3.940 19 C -0.213 4.213 20 C 0.231 3.769 21 N -0.415 5.415 22 N -0.219 5.219 23 C 0.098 3.902 24 C 0.042 3.958 25 O -0.279 6.279 26 C -0.156 4.156 27 C 0.163 3.837 28 H 0.252 0.748 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.403 0.597 36 H 0.166 0.834 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 -17.430 -15.164 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.052 3.948 11 C -0.180 4.180 12 C -0.150 4.150 13 C 0.058 3.942 14 H 0.096 0.904 15 N -0.359 5.359 16 C 0.380 3.620 17 O -0.398 6.398 18 C -0.107 4.107 19 C -0.242 4.242 20 C 0.063 3.937 21 N -0.212 5.212 22 N -0.049 5.049 23 C -0.023 4.023 24 C -0.035 4.035 25 O -0.186 6.186 26 C -0.197 4.197 27 C 0.034 3.966 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.237 0.763 36 H 0.184 0.816 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.149 0.851 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.891 -16.805 -15.177 26.057 hybrid contribution 0.840 0.463 -0.262 0.994 sum 13.732 -16.343 -15.439 26.344 Atomic orbital electron populations 1.70083 1.05176 1.25188 1.54445 1.25022 0.95248 0.98274 1.00980 0.86278 0.79384 0.84257 0.77198 1.20340 1.21688 1.21820 1.19249 0.92409 0.84985 1.41802 0.91706 1.43694 1.32366 1.01867 1.53298 1.21028 0.88631 0.95530 0.89589 1.21982 0.95076 1.01040 0.99875 1.21256 0.97652 0.99136 0.96971 1.20138 0.88934 0.94714 0.90376 0.90391 1.46399 1.41935 1.11047 1.36526 1.16778 0.80658 0.82027 0.82543 1.90820 1.53279 1.63827 1.31827 1.22146 0.98759 0.93540 0.96240 1.20090 1.01162 0.97803 1.05179 1.20760 0.94260 0.82174 0.96471 1.50673 1.32591 1.09463 1.28454 1.77690 1.04368 1.10901 1.11921 1.23250 0.90993 0.96832 0.91243 1.24447 1.03776 0.91583 0.83652 1.87148 1.58787 1.41922 1.30708 1.21895 1.00884 1.00058 0.96903 1.20569 0.93877 0.88238 0.93941 0.93805 0.95652 0.90728 0.93298 0.92521 0.90010 0.93051 0.76289 0.81640 0.86933 0.87609 0.88758 0.85149 0.92723 0.91828 0.94675 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 11.01 55.49 0.61 -25.40 16 2 C 0.00 0.08 4.87 -17.43 -0.08 0.00 16 3 Si 0.90 21.64 29.58 -169.99 -5.03 16.61 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.25 -6.86 9.44 -15.06 -0.14 -7.00 16 8 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 9 N -0.59 -14.44 2.27 -172.09 -0.39 -14.84 16 10 C 0.18 4.16 4.66 -2.94 -0.01 4.14 16 11 C -0.14 -2.61 5.71 -27.30 -0.16 -2.76 16 12 C -0.11 -1.93 5.00 -28.02 -0.14 -2.07 16 13 C 0.16 2.77 1.96 -70.99 -0.14 2.63 16 14 H 0.08 1.44 6.65 -51.92 -0.35 1.09 16 15 N -0.71 -10.86 4.88 -57.81 -0.28 -11.14 16 16 C 0.60 9.67 7.67 -12.39 -0.10 9.57 16 17 O -0.52 -9.89 16.40 5.30 0.09 -9.80 16 18 C 0.06 0.87 7.09 -82.96 -0.59 0.28 16 19 C -0.21 -2.78 10.60 -39.30 -0.42 -3.20 16 20 C 0.23 2.60 8.32 -16.54 -0.14 2.46 16 21 N -0.41 -4.43 5.01 -59.63 -0.30 -4.73 16 22 N -0.22 -2.92 12.39 33.32 0.41 -2.51 16 23 C 0.10 0.48 8.10 -2.67 -0.02 0.45 16 24 C 0.04 0.15 8.08 38.02 0.31 0.45 16 25 O -0.28 -2.43 11.19 -20.14 -0.23 -2.65 16 26 C -0.16 -2.94 5.20 -28.58 -0.15 -3.09 16 27 C 0.16 3.48 5.66 -4.09 -0.02 3.45 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 29 H 0.03 0.65 8.03 -51.92 -0.42 0.23 16 30 H 0.07 1.94 6.33 -51.93 -0.33 1.61 16 31 H 0.05 0.88 7.31 -51.92 -0.38 0.50 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.58 7.48 -51.93 -0.39 1.19 16 34 H 0.05 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.40 5.53 8.31 -40.82 -0.34 5.19 16 36 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 41 H 0.05 1.02 7.95 -51.93 -0.41 0.61 16 42 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 43 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 44 H 0.05 1.08 7.99 -51.93 -0.41 0.66 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -33.38 355.66 -7.92 -41.31 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.37 Total: 2.46 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.80 Total: 5.34 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.05 Total: -58.62 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.14 Total: -12.46 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.38 -7.92 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052448666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.195 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds