Wall clock time and date at job start Tue Mar 31 2020 12:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48498 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46837 * 299.99326 * 3 2 1 6 6 H 1.48492 * 109.47355 * 59.99626 * 3 2 1 7 7 C 1.38814 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99535 * 195.67925 * 7 2 1 9 9 N 1.36926 * 119.99986 * 15.68008 * 7 2 1 10 10 C 1.47613 * 118.64394 * 26.46260 * 9 7 2 11 11 C 1.53940 * 112.14543 * 137.88548 * 10 9 7 12 12 C 1.50880 * 110.09638 * 319.43405 * 11 10 9 13 13 C 1.52567 * 109.36103 * 91.88475 * 12 11 10 14 14 H 1.09009 * 108.38967 * 36.15575 * 13 12 11 15 15 N 1.46494 * 108.51573 * 153.73254 * 13 12 11 16 16 C 1.34773 * 120.00422 * 209.76886 * 15 13 12 17 17 O 1.21576 * 119.99953 * 359.97438 * 16 15 13 18 18 C 1.47718 * 120.00287 * 180.27664 * 16 15 13 19 19 C 1.40945 * 125.97648 * 179.72012 * 18 16 15 20 20 C 1.36176 * 107.95071 * 180.09315 * 19 18 16 21 21 N 1.35801 * 107.31468 * 359.61646 * 20 19 18 22 22 N 1.31846 * 125.97437 * 359.41611 * 18 16 15 23 23 C 1.47423 * 108.07111 * 180.77070 * 21 20 19 24 24 C 1.54647 * 102.36145 * 15.19301 * 23 21 20 25 25 O 1.36125 * 140.87780 * 179.13254 * 20 19 18 26 26 C 1.47090 * 114.32779 * 274.99278 * 13 12 11 27 27 C 1.44575 * 118.64771 * 206.47569 * 9 7 2 28 28 H 0.97006 * 119.99951 * 0.02562 * 1 2 3 29 29 H 1.09009 * 108.94114 * 258.57136 * 10 9 7 30 30 H 1.08999 * 108.94553 * 17.28243 * 10 9 7 31 31 H 1.09008 * 109.36795 * 79.62452 * 11 10 9 32 32 H 1.09000 * 109.37030 * 199.36895 * 11 10 9 33 33 H 1.09000 * 109.48772 * 331.91758 * 12 11 10 34 34 H 1.09003 * 109.48978 * 211.85064 * 12 11 10 35 35 H 0.97008 * 119.99863 * 29.76543 * 15 13 12 36 36 H 1.07996 * 126.02650 * 0.09851 * 19 18 16 37 37 H 1.08997 * 110.83088 * 133.41329 * 23 21 20 38 38 H 1.09008 * 110.82409 * 256.77786 * 23 21 20 39 39 H 1.08995 * 110.85293 * 93.36506 * 24 23 21 40 40 H 1.09000 * 110.85470 * 216.79837 * 24 23 21 41 41 H 1.08999 * 109.33282 * 183.06070 * 26 13 12 42 42 H 1.09008 * 109.32631 * 302.71136 * 26 13 12 43 43 H 1.08993 * 109.45482 * 150.66847 * 27 9 7 44 44 H 1.08999 * 109.42439 * 30.72981 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0601 -1.2193 0.2533 9 7 1.3638 -2.3661 -0.3194 10 6 0.1792 -2.2992 -1.1976 11 6 0.1707 -3.4252 -2.2473 12 6 1.5617 -3.6363 -2.7924 13 6 2.2703 -4.7076 -1.9690 14 1 1.5373 -5.4616 -1.6819 15 7 3.2858 -5.3452 -2.8106 16 6 3.6240 -6.6327 -2.6002 17 8 3.0867 -7.2650 -1.7116 18 6 4.6524 -7.2738 -3.4449 19 6 5.1048 -8.6040 -3.3326 20 6 6.0536 -8.8067 -4.2881 21 7 6.1843 -7.6459 -4.9806 22 7 5.3036 -6.7035 -4.4394 23 6 7.1956 -7.8526 -6.0331 24 6 7.3176 -9.3936 -6.0769 25 8 6.8945 -9.7706 -4.7536 26 6 2.9227 -4.2030 -0.7511 27 6 1.8695 -3.6098 0.2170 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7196 -2.3786 -0.5859 30 1 0.1734 -1.3379 -1.7114 31 1 -0.1802 -4.3478 -1.7849 32 1 -0.4980 -3.1531 -3.0639 33 1 2.1211 -2.7027 -2.7330 34 1 1.4999 -3.9582 -3.8319 35 1 3.7148 -4.8407 -3.5195 36 1 4.7597 -9.3338 -2.6152 37 1 6.8450 -7.4642 -6.9893 38 1 8.1442 -7.3934 -5.7546 39 1 6.6528 -9.8142 -6.8313 40 1 8.3488 -9.6963 -6.2589 41 1 3.4466 -5.0211 -0.2569 42 1 3.6389 -3.4267 -1.0207 43 1 1.0471 -4.3152 0.3350 44 1 2.3313 -3.4251 1.1868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052448666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:25 Heat of formation + Delta-G solvation = 36.447282 kcal Electronic energy + Delta-G solvation = -26972.951474 eV Core-core repulsion = 23121.334494 eV Total energy + Delta-G solvation = -3851.616980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.37971 -41.22291 -39.70671 -38.91444 -36.42276 -34.40294 -34.06190 -33.30826 -31.99976 -30.76014 -29.90601 -27.92848 -26.15551 -25.48195 -24.60106 -23.57450 -22.50386 -21.56007 -21.32214 -20.76175 -18.88364 -18.57082 -18.11185 -17.49471 -17.30190 -16.99345 -16.55220 -16.28781 -16.07634 -15.74755 -15.44423 -15.23354 -15.17564 -14.96334 -14.39633 -14.25452 -14.09312 -13.96676 -13.59225 -13.17559 -13.13755 -12.99942 -12.73647 -12.38364 -12.27437 -12.15791 -12.12824 -12.02155 -11.73427 -11.55665 -11.50419 -11.33068 -11.20958 -10.43356 -10.36642 -10.09633 -9.69612 -8.62742 -7.81944 -5.27908 0.11610 0.78820 0.93126 1.47062 1.49511 1.59426 1.68076 2.18808 2.26969 2.54406 3.01759 3.31557 3.37696 3.67946 3.75185 3.83223 3.84663 4.09299 4.13894 4.24170 4.33372 4.44752 4.46520 4.46984 4.47401 4.62715 4.69493 4.75356 4.79697 4.95301 5.00601 5.13156 5.16340 5.19076 5.25908 5.33137 5.47980 5.51658 5.61606 5.71900 5.76357 5.85374 6.22113 6.44699 6.52401 7.05507 7.22531 7.98307 8.37635 9.23379 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.002609 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.234014 B =10730.580742 C =11207.097285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.295 1.295 7 C -0.260 4.260 8 H 0.063 0.937 9 N -0.602 5.602 10 C 0.186 3.814 11 C -0.129 4.129 12 C -0.102 4.102 13 C 0.168 3.832 14 H 0.070 0.930 15 N -0.700 5.700 16 C 0.600 3.400 17 O -0.557 6.557 18 C 0.043 3.957 19 C -0.239 4.239 20 C 0.240 3.760 21 N -0.410 5.410 22 N -0.232 5.232 23 C 0.086 3.914 24 C 0.040 3.960 25 O -0.289 6.289 26 C -0.138 4.138 27 C 0.160 3.840 28 H 0.248 0.752 29 H -0.006 1.006 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.412 0.588 36 H 0.163 0.837 37 H 0.137 0.863 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.170 0.830 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.413 -18.572 -17.751 29.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.222 1.222 7 C -0.390 4.390 8 H 0.081 0.919 9 N -0.324 5.324 10 C 0.061 3.939 11 C -0.168 4.168 12 C -0.140 4.140 13 C 0.064 3.936 14 H 0.088 0.912 15 N -0.350 5.350 16 C 0.384 3.616 17 O -0.433 6.433 18 C -0.123 4.123 19 C -0.269 4.269 20 C 0.071 3.929 21 N -0.208 5.208 22 N -0.063 5.063 23 C -0.033 4.033 24 C -0.034 4.034 25 O -0.196 6.196 26 C -0.179 4.179 27 C 0.032 3.968 28 H 0.057 0.943 29 H 0.012 0.988 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.249 0.751 36 H 0.181 0.819 37 H 0.155 0.845 38 H 0.143 0.857 39 H 0.130 0.870 40 H 0.187 0.813 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.212 -17.970 -17.804 29.518 hybrid contribution 0.257 0.707 0.468 0.886 sum 15.469 -17.263 -17.336 28.946 Atomic orbital electron populations 1.70237 1.06481 1.25519 1.55903 1.25721 0.95990 1.01195 1.01420 0.85286 0.78608 0.80346 0.76677 1.19331 1.21625 1.22249 1.19498 0.92482 0.86066 1.40956 0.91905 1.43874 1.32411 1.02183 1.53943 1.20823 0.87061 0.96124 0.89852 1.21833 0.96687 0.99267 0.99006 1.21138 0.96193 0.98099 0.98551 1.19888 0.89099 0.94482 0.90089 0.91154 1.46185 1.41491 1.10959 1.36371 1.16995 0.80548 0.81848 0.82203 1.90793 1.54610 1.64571 1.33357 1.21757 0.99336 0.94096 0.97077 1.20145 1.02678 0.97623 1.06440 1.20706 0.93530 0.83050 0.95622 1.51100 1.32204 1.08557 1.28934 1.77558 1.05051 1.11872 1.11815 1.23846 0.90416 0.98098 0.90904 1.24942 1.06434 0.90509 0.81533 1.87162 1.57859 1.41373 1.33227 1.21646 0.99697 0.99493 0.97056 1.20653 0.94567 0.87368 0.94187 0.94254 0.98782 0.93645 0.92458 0.90349 0.91994 0.89990 0.75130 0.81912 0.84534 0.85736 0.87011 0.81254 0.92538 0.92757 0.94171 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 11.01 21.65 0.24 -55.00 16 2 C -0.05 -2.68 4.87 84.86 0.41 -2.27 16 3 Si 0.96 45.08 29.58 68.60 2.03 47.11 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.26 -14.20 9.44 84.04 0.79 -13.41 16 8 H 0.06 3.41 7.88 -2.91 -0.02 3.38 16 9 N -0.60 -30.01 2.27 -698.37 -1.59 -31.60 16 10 C 0.19 8.94 4.66 86.48 0.40 9.34 16 11 C -0.13 -4.67 5.71 30.22 0.17 -4.50 16 12 C -0.10 -3.36 5.00 29.76 0.15 -3.21 16 13 C 0.17 5.64 1.96 43.01 0.08 5.73 16 14 H 0.07 2.54 6.65 -2.38 -0.02 2.53 16 15 N -0.70 -20.81 4.88 -455.07 -2.22 -23.03 16 16 C 0.60 19.30 7.67 86.75 0.67 19.97 16 17 O -0.56 -21.25 16.40 -3.95 -0.06 -21.32 16 18 C 0.04 1.22 7.09 42.31 0.30 1.52 16 19 C -0.24 -6.20 10.60 22.45 0.24 -5.96 16 20 C 0.24 5.02 8.32 83.60 0.70 5.72 16 21 N -0.41 -7.79 5.01 -453.34 -2.27 -10.06 16 22 N -0.23 -5.87 12.39 -48.51 -0.60 -6.47 16 23 C 0.09 0.51 8.10 86.76 0.70 1.21 16 24 C 0.04 0.12 8.08 72.54 0.59 0.70 16 25 O -0.29 -4.27 11.19 -94.97 -1.06 -5.33 16 26 C -0.14 -5.18 5.20 29.39 0.15 -5.02 16 27 C 0.16 6.94 5.66 87.38 0.49 7.43 16 28 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 29 H -0.01 -0.32 8.03 -2.38 -0.02 -0.34 16 30 H 0.05 2.43 6.33 -2.39 -0.02 2.41 16 31 H 0.06 2.00 7.31 -2.38 -0.02 1.98 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.06 2.34 7.48 -2.39 -0.02 2.32 16 34 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16 35 H 0.41 10.76 8.31 -92.70 -0.77 9.99 16 36 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 37 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.17 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.06 2.10 7.95 -2.39 -0.02 2.08 16 42 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.04 1.69 8.06 -2.39 -0.02 1.67 16 44 H 0.04 1.78 7.99 -2.39 -0.02 1.76 16 Total: -1.00 -74.57 355.66 0.57 -74.01 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.25 Total: 14.45 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 5.85 Total: 17.24 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -6.44 Total: -126.16 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -1.13 Total: -26.64 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.57 0.57 -74.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052448666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.455 kcal (2) G-P(sol) polarization free energy of solvation -74.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds