Wall clock time and date at job start Tue Mar 31 2020 13:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32212 * 120.51191 * 2 1 4 4 C 1.31911 * 121.14489 * 180.02562 * 3 2 1 5 5 N 1.31754 * 122.19629 * 0.02562 * 4 3 2 6 6 C 1.32751 * 120.86905 * 359.68064 * 5 4 3 7 7 O 1.35276 * 120.61846 * 180.28380 * 6 5 4 8 8 C 1.39768 * 120.50732 * 180.02562 * 2 1 3 9 9 C 1.47540 * 120.98022 * 359.95097 * 8 2 1 10 10 O 1.21582 * 119.99908 * 90.00290 * 9 8 2 11 11 N 1.34774 * 119.99790 * 270.00245 * 9 8 2 12 12 C 1.46497 * 119.99970 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.33075 * 37.00304 * 12 11 9 14 14 C 1.50125 * 110.25509 * 159.01996 * 12 11 9 15 15 C 1.54836 * 110.81996 * 216.65402 * 14 12 11 16 16 C 1.54408 * 110.07096 * 321.07555 * 15 14 12 17 17 N 1.43437 * 116.38840 * 318.64777 * 16 15 14 18 18 C 1.36936 * 120.53822 * 271.72995 * 17 16 15 19 19 H 1.07995 * 120.00046 * 336.56012 * 18 17 16 20 20 C 1.38808 * 119.99994 * 156.83138 * 18 17 16 21 21 N 1.31621 * 119.99939 * 339.96288 * 20 18 17 22 22 Si 1.86797 * 120.00080 * 159.95928 * 20 18 17 23 23 H 1.48503 * 109.46811 * 60.00225 * 22 20 18 24 24 H 1.48504 * 109.47462 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47265 * 300.00414 * 22 20 18 26 26 C 1.50172 * 118.92296 * 91.45545 * 17 16 15 27 27 C 1.46238 * 107.53203 * 289.83667 * 26 17 16 28 28 H 1.08994 * 109.47271 * 269.97713 * 1 2 3 29 29 H 1.09007 * 109.46937 * 29.97713 * 1 2 3 30 30 H 1.08997 * 109.47349 * 149.97182 * 1 2 3 31 31 H 1.08003 * 118.90268 * 180.02562 * 4 3 2 32 32 H 0.96703 * 113.99997 * 270.28519 * 7 6 5 33 33 H 0.97001 * 120.00454 * 0.02562 * 11 9 8 34 34 H 1.08993 * 109.20467 * 337.00204 * 14 12 11 35 35 H 1.09004 * 109.20711 * 96.30853 * 14 12 11 36 36 H 1.09006 * 109.35875 * 81.33610 * 15 14 12 37 37 H 1.08996 * 109.36175 * 201.06109 * 15 14 12 38 38 H 1.08994 * 107.88969 * 196.93169 * 16 15 14 39 39 H 1.09000 * 108.10609 * 80.53360 * 16 15 14 40 40 H 0.97002 * 120.00003 * 180.02562 * 21 20 18 41 41 H 1.08990 * 109.84782 * 49.35054 * 26 17 16 42 42 H 1.08998 * 109.84192 * 170.27131 * 26 17 16 43 43 H 1.08995 * 108.52224 * 179.64827 * 27 26 17 44 44 H 1.08989 * 108.52956 * 297.17139 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1390 0.0000 4 6 3.4973 1.1536 -0.0005 5 7 4.2116 0.0465 -0.0015 6 6 3.6234 -1.1436 0.0042 7 8 4.3617 -2.2771 0.0089 8 6 2.2165 -1.2042 -0.0005 9 6 1.5122 -2.5006 0.0000 10 8 1.2213 -3.0348 -1.0528 11 7 1.1914 -3.0927 1.1674 12 6 0.4926 -4.3803 1.1679 13 1 0.8522 -5.0067 0.3516 14 6 0.6886 -5.0774 2.4830 15 6 0.8230 -6.6066 2.2805 16 6 -0.1539 -7.0839 1.1842 17 7 -1.4666 -6.5062 1.2045 18 6 -2.4650 -7.0735 1.9504 19 1 -2.4133 -8.1192 2.2156 20 6 -3.5463 -6.3061 2.3610 21 7 -3.4479 -4.9939 2.3923 22 14 -5.1411 -7.1354 2.8690 23 1 -4.8846 -8.0385 4.0197 24 1 -6.1332 -6.1025 3.2614 25 1 -5.6735 -7.9248 1.7294 26 6 -1.7267 -5.2655 0.3994 27 6 -1.0123 -4.1643 1.0440 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8903 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 4.0088 2.1048 -0.0001 32 1 4.5795 -2.6082 -0.8731 33 1 1.4232 -2.6664 2.0073 34 1 1.5927 -4.6978 2.9588 35 1 -0.1670 -4.8748 3.1273 36 1 1.8449 -6.8434 1.9840 37 1 0.5907 -7.1167 3.2154 38 1 -0.2572 -8.1651 1.2753 39 1 0.2956 -6.8716 0.2141 40 1 -4.2034 -4.4576 2.6795 41 1 -1.3587 -5.4004 -0.6176 42 1 -2.7957 -5.0538 0.3809 43 1 -1.1852 -3.2552 0.4680 44 1 -1.4249 -4.0211 2.0425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052647256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:10 Heat of formation + Delta-G solvation = 3.552154 kcal Electronic energy + Delta-G solvation = -28009.488850 eV Core-core repulsion = 24156.445430 eV Total energy + Delta-G solvation = -3853.043420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62524 -39.57034 -38.04230 -37.62983 -34.63766 -34.44165 -32.68155 -32.12071 -30.91847 -30.42066 -28.85525 -26.31562 -25.36992 -23.75847 -23.13741 -23.08151 -20.86837 -20.05048 -19.28166 -19.18677 -18.29573 -17.50332 -16.74491 -16.54269 -15.99774 -15.29130 -14.92487 -14.54595 -14.39236 -14.19400 -13.90363 -13.77778 -13.58449 -13.26508 -13.08096 -12.97449 -12.72175 -12.29489 -12.07506 -11.85291 -11.50988 -11.44885 -11.24548 -10.86574 -10.75700 -10.64068 -10.40750 -10.22492 -10.07372 -9.87243 -9.80619 -9.66257 -9.61220 -9.54522 -9.29531 -8.72869 -8.37158 -6.73526 -5.80743 -3.19035 0.31493 0.59398 2.51853 2.95457 3.16862 3.38007 3.40949 3.44061 3.46539 3.68504 3.95279 4.50199 4.54015 4.68290 4.89733 5.05780 5.31315 5.35872 5.38160 5.46264 5.58468 5.62352 5.67765 5.73351 5.96826 6.08996 6.21070 6.27192 6.44176 6.46706 6.51175 6.61722 6.83733 6.86974 6.89736 6.99787 7.01612 7.09225 7.20034 7.55022 7.67080 7.67960 7.72103 7.92122 8.28160 8.41644 9.17849 9.85900 10.39194 11.26601 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.003490 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.856336 B = 8021.402992 C = 8817.530939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.229 3.771 3 N -0.526 5.526 4 C 0.332 3.668 5 N -0.544 5.544 6 C 0.396 3.604 7 O -0.469 6.469 8 C -0.247 4.247 9 C 0.575 3.425 10 O -0.528 6.528 11 N -0.702 5.702 12 C 0.146 3.854 13 H 0.085 0.915 14 C -0.113 4.113 15 C -0.139 4.139 16 C 0.154 3.846 17 N -0.588 5.588 18 C -0.248 4.248 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.899 3.101 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.285 1.285 26 C 0.169 3.831 27 C -0.131 4.131 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.205 0.795 32 H 0.414 0.586 33 H 0.395 0.605 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.252 0.748 41 H 0.010 0.990 42 H 0.092 0.908 43 H 0.029 0.971 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.453 10.468 -3.409 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 N -0.242 5.242 4 C 0.044 3.956 5 N -0.269 5.269 6 C 0.208 3.792 7 O -0.278 6.278 8 C -0.256 4.256 9 C 0.357 3.643 10 O -0.404 6.404 11 N -0.351 5.351 12 C 0.043 3.957 13 H 0.103 0.897 14 C -0.151 4.151 15 C -0.181 4.181 16 C 0.025 3.975 17 N -0.309 5.309 18 C -0.377 4.377 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.730 3.270 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.212 1.212 26 C 0.045 3.955 27 C -0.171 4.171 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.222 0.778 32 H 0.276 0.724 33 H 0.229 0.771 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.028 0.972 42 H 0.110 0.890 43 H 0.048 0.952 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.518 10.975 -3.537 17.019 hybrid contribution -0.784 -0.876 0.459 1.262 sum 11.734 10.099 -3.078 15.784 Atomic orbital electron populations 1.20979 0.86593 1.05177 1.04759 1.21886 0.97919 0.85907 0.85943 1.68311 1.10132 1.29490 1.16310 1.24958 0.86325 0.96079 0.88218 1.68052 1.42690 0.98699 1.17496 1.19395 0.85575 0.85927 0.88267 1.84625 1.72486 1.35933 1.34728 1.21945 0.95032 0.97369 1.11238 1.17466 0.78737 0.83259 0.84821 1.90839 1.54234 1.64282 1.31073 1.46279 1.58050 1.23321 1.07408 1.20594 0.94037 0.81814 0.99251 0.89654 1.21699 1.01119 0.96104 0.96191 1.22750 0.98826 0.94649 1.01869 1.20338 0.86290 0.96251 0.94663 1.44274 1.04608 1.30259 1.51783 1.19179 0.98740 0.92833 1.26959 0.91549 1.24860 0.99757 0.95312 0.99603 1.69949 1.30136 1.03527 1.51049 0.86412 0.83864 0.78447 0.78297 1.21125 1.21772 1.21218 1.20096 1.00976 0.84733 0.89728 1.21337 0.91697 0.98780 1.05262 0.88517 0.88992 0.89201 0.77833 0.72448 0.77106 0.94024 0.89987 0.93584 0.92574 0.94883 0.95309 0.93753 0.97235 0.89008 0.95193 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.85 36.01 0.35 -0.93 16 2 C 0.23 2.79 6.86 -81.86 -0.56 2.23 16 3 N -0.53 -5.96 10.36 -10.52 -0.11 -6.07 16 4 C 0.33 3.28 12.27 -92.09 -1.13 2.15 16 5 N -0.54 -6.34 10.45 -14.31 -0.15 -6.48 16 6 C 0.40 4.91 7.85 -16.18 -0.13 4.78 16 7 O -0.47 -5.28 13.10 -17.52 -0.23 -5.51 16 8 C -0.25 -3.25 5.67 -104.56 -0.59 -3.84 16 9 C 0.57 8.88 5.37 -12.47 -0.07 8.81 16 10 O -0.53 -9.95 16.83 5.29 0.09 -9.86 16 11 N -0.70 -10.57 5.01 -56.48 -0.28 -10.86 16 12 C 0.15 2.60 2.17 -69.60 -0.15 2.45 16 13 H 0.09 1.68 5.83 -51.93 -0.30 1.37 16 14 C -0.11 -2.00 5.30 -27.19 -0.14 -2.14 16 15 C -0.14 -2.51 6.40 -25.03 -0.16 -2.67 16 16 C 0.15 3.15 5.13 -4.92 -0.03 3.13 16 17 N -0.59 -14.03 2.61 -175.41 -0.46 -14.49 16 18 C -0.25 -6.49 9.63 -15.06 -0.14 -6.63 16 19 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 20 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 21 N -0.90 -23.94 9.44 55.49 0.52 -23.42 16 22 Si 0.90 21.04 29.60 -169.99 -5.03 16.01 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.17 3.91 5.25 -5.20 -0.03 3.88 16 27 C -0.13 -2.72 4.73 -30.18 -0.14 -2.86 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.13 7.18 -51.93 -0.37 0.75 16 31 H 0.21 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.41 2.92 9.06 45.56 0.41 3.33 16 33 H 0.40 5.18 8.43 -40.82 -0.34 4.84 16 34 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 35 H 0.08 1.69 6.83 -51.93 -0.35 1.33 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.03 0.67 7.99 -51.93 -0.41 0.26 16 39 H 0.03 0.57 6.89 -51.93 -0.36 0.21 16 40 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 41 H 0.01 0.22 8.13 -51.93 -0.42 -0.21 16 42 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 43 H 0.03 0.61 7.90 -51.93 -0.41 0.20 16 44 H 0.10 2.39 5.31 -51.93 -0.28 2.12 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -30.77 354.31 -8.54 -39.31 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.22 Total: 7.69 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -3.00 Total: 8.34 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.48 Total: -61.32 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.14 Total: -15.37 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.77 -8.54 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052647256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.862 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds