Wall clock time and date at job start Tue Mar 31 2020 13:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32212 * 120.51191 * 2 1 4 4 C 1.31911 * 121.14489 * 180.02562 * 3 2 1 5 5 N 1.31754 * 122.19629 * 0.02562 * 4 3 2 6 6 C 1.32751 * 120.86905 * 359.68064 * 5 4 3 7 7 O 1.35276 * 120.61846 * 180.28380 * 6 5 4 8 8 C 1.39768 * 120.50732 * 180.02562 * 2 1 3 9 9 C 1.47540 * 120.98022 * 359.95097 * 8 2 1 10 10 O 1.21582 * 119.99908 * 90.00290 * 9 8 2 11 11 N 1.34774 * 119.99790 * 270.00245 * 9 8 2 12 12 C 1.46497 * 119.99970 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.33075 * 37.00304 * 12 11 9 14 14 C 1.50125 * 110.25509 * 159.01996 * 12 11 9 15 15 C 1.54836 * 110.81996 * 216.65402 * 14 12 11 16 16 C 1.54408 * 110.07096 * 321.07555 * 15 14 12 17 17 N 1.43437 * 116.38840 * 318.64777 * 16 15 14 18 18 C 1.36936 * 120.53822 * 271.72995 * 17 16 15 19 19 H 1.07995 * 120.00046 * 336.56012 * 18 17 16 20 20 C 1.38808 * 119.99994 * 156.83138 * 18 17 16 21 21 N 1.31621 * 119.99939 * 339.96288 * 20 18 17 22 22 Si 1.86797 * 120.00080 * 159.95928 * 20 18 17 23 23 H 1.48503 * 109.46811 * 60.00225 * 22 20 18 24 24 H 1.48504 * 109.47462 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47265 * 300.00414 * 22 20 18 26 26 C 1.50172 * 118.92296 * 91.45545 * 17 16 15 27 27 C 1.46238 * 107.53203 * 289.83667 * 26 17 16 28 28 H 1.08994 * 109.47271 * 269.97713 * 1 2 3 29 29 H 1.09007 * 109.46937 * 29.97713 * 1 2 3 30 30 H 1.08997 * 109.47349 * 149.97182 * 1 2 3 31 31 H 1.08003 * 118.90268 * 180.02562 * 4 3 2 32 32 H 0.96703 * 113.99997 * 270.28519 * 7 6 5 33 33 H 0.97001 * 120.00454 * 0.02562 * 11 9 8 34 34 H 1.08993 * 109.20467 * 337.00204 * 14 12 11 35 35 H 1.09004 * 109.20711 * 96.30853 * 14 12 11 36 36 H 1.09006 * 109.35875 * 81.33610 * 15 14 12 37 37 H 1.08996 * 109.36175 * 201.06109 * 15 14 12 38 38 H 1.08994 * 107.88969 * 196.93169 * 16 15 14 39 39 H 1.09000 * 108.10609 * 80.53360 * 16 15 14 40 40 H 0.97002 * 120.00003 * 180.02562 * 21 20 18 41 41 H 1.08990 * 109.84782 * 49.35054 * 26 17 16 42 42 H 1.08998 * 109.84192 * 170.27131 * 26 17 16 43 43 H 1.08995 * 108.52224 * 179.64827 * 27 26 17 44 44 H 1.08989 * 108.52956 * 297.17139 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1390 0.0000 4 6 3.4973 1.1536 -0.0005 5 7 4.2116 0.0465 -0.0015 6 6 3.6234 -1.1436 0.0042 7 8 4.3617 -2.2771 0.0089 8 6 2.2165 -1.2042 -0.0005 9 6 1.5122 -2.5006 0.0000 10 8 1.2213 -3.0348 -1.0528 11 7 1.1914 -3.0927 1.1674 12 6 0.4926 -4.3803 1.1679 13 1 0.8522 -5.0067 0.3516 14 6 0.6886 -5.0774 2.4830 15 6 0.8230 -6.6066 2.2805 16 6 -0.1539 -7.0839 1.1842 17 7 -1.4666 -6.5062 1.2045 18 6 -2.4650 -7.0735 1.9504 19 1 -2.4133 -8.1192 2.2156 20 6 -3.5463 -6.3061 2.3610 21 7 -3.4479 -4.9939 2.3923 22 14 -5.1411 -7.1354 2.8690 23 1 -4.8846 -8.0385 4.0197 24 1 -6.1332 -6.1025 3.2614 25 1 -5.6735 -7.9248 1.7294 26 6 -1.7267 -5.2655 0.3994 27 6 -1.0123 -4.1643 1.0440 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8903 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 4.0088 2.1048 -0.0001 32 1 4.5795 -2.6082 -0.8731 33 1 1.4232 -2.6664 2.0073 34 1 1.5927 -4.6978 2.9588 35 1 -0.1670 -4.8748 3.1273 36 1 1.8449 -6.8434 1.9840 37 1 0.5907 -7.1167 3.2154 38 1 -0.2572 -8.1651 1.2753 39 1 0.2956 -6.8716 0.2141 40 1 -4.2034 -4.4576 2.6795 41 1 -1.3587 -5.4004 -0.6176 42 1 -2.7957 -5.0538 0.3809 43 1 -1.1852 -3.2552 0.4680 44 1 -1.4249 -4.0211 2.0425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052647256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:09 Heat of formation + Delta-G solvation = -19.512574 kcal Electronic energy + Delta-G solvation = -28010.489012 eV Core-core repulsion = 24156.445430 eV Total energy + Delta-G solvation = -3854.043582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.55567 -40.89833 -39.23142 -38.85326 -36.23447 -35.35015 -34.25278 -33.26650 -32.59075 -32.03782 -29.79625 -27.98456 -26.52395 -25.22399 -24.93086 -23.97172 -22.18702 -21.65727 -20.86126 -20.03919 -19.20294 -18.73796 -18.56809 -17.58171 -17.23923 -16.80398 -16.21467 -15.86345 -15.64437 -15.58116 -15.40114 -15.30195 -14.97951 -14.50338 -14.40659 -13.91829 -13.73579 -13.69075 -13.53296 -13.23488 -13.15882 -13.04132 -12.62517 -12.60347 -12.46144 -12.08708 -11.88070 -11.71945 -11.67121 -11.50339 -11.22033 -11.02387 -11.02040 -10.67111 -10.55766 -10.49219 -10.00612 -8.65299 -7.80266 -5.20364 -0.56776 -0.30053 1.31967 1.49867 1.53226 1.58261 2.01186 2.12159 2.48125 2.56656 2.86846 3.10640 3.33194 3.45717 3.61566 3.76037 4.00589 4.06740 4.09975 4.21225 4.25351 4.50589 4.53573 4.59719 4.62643 4.68747 4.86781 4.88052 4.95041 5.00708 5.14161 5.20331 5.24194 5.31265 5.38359 5.53165 5.63208 5.63979 5.66526 5.71320 6.09019 6.28023 6.42060 6.44364 6.82405 7.05669 7.19636 7.92552 8.44360 9.24245 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.003490 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.856336 B = 8021.402992 C = 8817.530939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.230 3.770 3 N -0.532 5.532 4 C 0.340 3.660 5 N -0.553 5.553 6 C 0.401 3.599 7 O -0.477 6.477 8 C -0.265 4.265 9 C 0.584 3.416 10 O -0.565 6.565 11 N -0.694 5.694 12 C 0.162 3.838 13 H 0.073 0.927 14 C -0.104 4.104 15 C -0.132 4.132 16 C 0.147 3.853 17 N -0.600 5.600 18 C -0.262 4.262 19 H 0.063 0.937 20 C -0.039 4.039 21 N -0.915 5.915 22 Si 0.955 3.045 23 H -0.281 1.281 24 H -0.295 1.295 25 H -0.287 1.287 26 C 0.173 3.827 27 C -0.116 4.116 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.246 0.754 32 H 0.431 0.569 33 H 0.408 0.592 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.248 0.752 41 H 0.010 0.990 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.218 11.485 -3.016 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 N -0.249 5.249 4 C 0.053 3.947 5 N -0.279 5.279 6 C 0.213 3.787 7 O -0.288 6.288 8 C -0.274 4.274 9 C 0.368 3.632 10 O -0.444 6.444 11 N -0.343 5.343 12 C 0.058 3.942 13 H 0.092 0.908 14 C -0.142 4.142 15 C -0.173 4.173 16 C 0.019 3.981 17 N -0.323 5.323 18 C -0.392 4.392 19 H 0.080 0.920 20 C -0.235 4.235 21 N -0.560 5.560 22 Si 0.785 3.215 23 H -0.207 1.207 24 H -0.221 1.221 25 H -0.214 1.214 26 C 0.049 3.951 27 C -0.156 4.156 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.262 0.738 32 H 0.295 0.705 33 H 0.243 0.757 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.028 0.972 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.322 11.993 -3.137 18.941 hybrid contribution -1.280 -1.169 0.280 1.756 sum 13.041 10.824 -2.856 17.187 Atomic orbital electron populations 1.20976 0.86222 1.04898 1.05217 1.22025 0.98345 0.85937 0.85320 1.68413 1.10838 1.28722 1.16896 1.25840 0.85982 0.97086 0.85742 1.68193 1.42715 0.98737 1.18226 1.19467 0.85292 0.86541 0.87448 1.84573 1.72227 1.35757 1.36285 1.21704 0.95430 0.96239 1.14051 1.17708 0.77861 0.83640 0.84007 1.90817 1.55705 1.65512 1.32339 1.46095 1.57539 1.22467 1.08193 1.20184 0.92048 0.82948 0.98972 0.90848 1.21548 1.01193 0.96050 0.95454 1.22648 0.99576 0.94604 1.00478 1.20468 0.85493 0.96049 0.96052 1.44346 1.05748 1.30443 1.51723 1.19366 0.99885 0.92852 1.27063 0.91955 1.25450 1.01910 0.95902 1.00209 1.70089 1.30181 1.04196 1.51557 0.85539 0.80762 0.77416 0.77811 1.20674 1.22108 1.21379 1.19937 0.99456 0.85673 0.90005 1.21086 0.93647 0.97600 1.03228 0.87662 0.87417 0.91262 0.73801 0.70508 0.75655 0.90964 0.93062 0.90478 0.93118 0.94993 0.94643 0.94308 0.97215 0.92064 0.95508 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.85 71.24 0.70 -1.74 16 2 C 0.23 5.26 6.86 42.87 0.29 5.56 16 3 N -0.53 -10.80 10.36 -187.21 -1.94 -12.74 16 4 C 0.34 5.71 12.27 180.86 2.22 7.93 16 5 N -0.55 -11.48 10.45 -312.03 -3.26 -14.74 16 6 C 0.40 9.19 7.85 85.18 0.67 9.86 16 7 O -0.48 -9.85 13.10 -85.61 -1.12 -10.97 16 8 C -0.27 -6.66 5.67 -19.82 -0.11 -6.77 16 9 C 0.58 17.68 5.37 86.70 0.47 18.15 16 10 O -0.56 -21.32 16.83 -3.98 -0.07 -21.39 16 11 N -0.69 -20.26 5.01 -450.88 -2.26 -22.51 16 12 C 0.16 5.72 2.17 43.91 0.10 5.81 16 13 H 0.07 2.83 5.83 -2.38 -0.01 2.82 16 14 C -0.10 -3.56 5.30 30.29 0.16 -3.40 16 15 C -0.13 -4.54 6.40 31.70 0.20 -4.34 16 16 C 0.15 5.98 5.13 87.42 0.45 6.43 16 17 N -0.60 -29.08 2.61 -708.86 -1.85 -30.93 16 18 C -0.26 -13.90 9.63 84.03 0.81 -13.09 16 19 H 0.06 3.30 7.89 -2.91 -0.02 3.27 16 20 C -0.04 -2.05 4.90 84.86 0.42 -1.63 16 21 N -0.91 -49.73 9.44 21.65 0.20 -49.52 16 22 Si 0.96 43.76 29.60 68.60 2.03 45.79 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 26 C 0.17 8.26 5.25 83.58 0.44 8.70 16 27 C -0.12 -4.90 4.73 28.36 0.13 -4.77 16 28 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.11 1.88 8.14 -2.38 -0.02 1.87 16 30 H 0.07 1.76 7.18 -2.39 -0.02 1.74 16 31 H 0.25 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.43 5.36 9.06 -74.06 -0.67 4.69 16 33 H 0.41 10.06 8.43 -92.71 -0.78 9.27 16 34 H 0.07 2.02 7.81 -2.39 -0.02 2.00 16 35 H 0.05 2.10 6.83 -2.38 -0.02 2.08 16 36 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.03 1.29 7.99 -2.39 -0.02 1.27 16 39 H 0.04 1.38 6.89 -2.39 -0.02 1.36 16 40 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 41 H 0.01 0.46 8.13 -2.39 -0.02 0.44 16 42 H 0.06 3.28 6.04 -2.39 -0.01 3.27 16 43 H 0.03 1.11 7.90 -2.39 -0.02 1.09 16 44 H 0.08 3.77 5.31 -2.39 -0.01 3.76 16 Total: -1.00 -66.57 354.31 -1.72 -68.29 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.39 Total: 22.03 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 6.94 Total: 26.70 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -9.10 Total: -130.46 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.19 Total: -32.36 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -66.57 -1.72 -68.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052647256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.777 kcal (2) G-P(sol) polarization free energy of solvation -66.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds