Wall clock time and date at job start Tue Mar 31 2020 12:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48499 * 109.47141 * 275.56620 * 3 2 1 5 5 H 1.48498 * 109.47510 * 35.56910 * 3 2 1 6 6 H 1.48504 * 109.47136 * 155.57250 * 3 2 1 7 7 C 1.38810 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00538 * 336.35097 * 7 2 1 9 9 N 1.36945 * 119.99769 * 156.34517 * 7 2 1 10 10 C 1.50170 * 120.53352 * 140.23302 * 9 7 2 11 11 C 1.46238 * 107.53109 * 109.56889 * 10 9 7 12 12 C 1.52531 * 114.27819 * 58.40397 * 11 10 9 13 13 C 1.50127 * 105.41659 * 270.59283 * 12 11 10 14 14 H 1.08997 * 109.20872 * 337.38847 * 13 12 11 15 15 N 1.46499 * 109.21054 * 218.02279 * 13 12 11 16 16 C 1.34776 * 119.99944 * 155.00036 * 15 13 12 17 17 O 1.21606 * 119.99996 * 0.02562 * 16 15 13 18 18 C 1.47291 * 119.99742 * 180.02562 * 16 15 13 19 19 C 1.37938 * 125.89568 * 180.02562 * 18 16 15 20 20 C 1.39452 * 107.45701 * 179.97438 * 19 18 16 21 21 C 1.37926 * 107.46261 * 0.02562 * 20 19 18 22 22 C 1.47292 * 125.89800 * 180.02562 * 21 20 19 23 23 N 1.34782 * 119.99890 * 179.97438 * 22 21 20 24 24 O 1.21611 * 120.00178 * 359.97438 * 22 21 20 25 25 N 1.36747 * 125.90459 * 0.02562 * 18 16 15 26 26 H 0.97005 * 125.65922 * 0.25810 * 25 18 16 27 27 C 1.54845 * 110.80937 * 97.68374 * 13 12 11 28 28 C 1.43429 * 120.54105 * 320.21216 * 9 7 2 29 29 H 0.96995 * 119.99666 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.84641 * 350.06087 * 10 9 7 31 31 H 1.09003 * 109.89924 * 229.10498 * 10 9 7 32 32 H 1.09001 * 108.52373 * 297.16545 * 11 10 9 33 33 H 1.09007 * 108.52335 * 179.64452 * 11 10 9 34 34 H 1.09004 * 110.24583 * 151.62408 * 12 11 10 35 35 H 1.08997 * 110.24787 * 29.56963 * 12 11 10 36 36 H 0.97005 * 119.99844 * 335.00852 * 15 13 12 37 37 H 1.07991 * 126.26854 * 0.02562 * 19 18 16 38 38 H 1.07994 * 126.26439 * 179.97438 * 20 19 18 39 39 H 0.97000 * 120.00100 * 359.97438 * 23 22 21 40 40 H 0.97003 * 119.99958 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.36204 * 81.33858 * 27 13 12 42 42 H 1.09008 * 109.35740 * 200.92586 * 27 13 12 43 43 H 1.09005 * 108.15672 * 33.30615 * 28 9 7 44 44 H 1.08992 * 108.16051 * 150.07893 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3800 2.1143 -1.3935 5 1 1.5114 2.6159 0.8144 6 1 3.6017 1.4091 0.5790 7 6 2.0103 -1.2021 0.0005 8 1 1.5384 -2.0980 0.3761 9 7 3.2934 -1.2521 -0.4753 10 6 4.3320 -2.0869 0.2173 11 6 4.6339 -3.2242 -0.6511 12 6 5.1379 -2.8379 -2.0379 13 6 3.9074 -2.7088 -2.8881 14 1 3.0997 -3.2878 -2.4403 15 7 4.1898 -3.2312 -4.2274 16 6 3.1839 -3.6922 -4.9969 17 8 2.0418 -3.6741 -4.5797 18 6 3.4680 -4.2178 -6.3431 19 6 2.5366 -4.7171 -7.2296 20 6 3.2209 -5.1056 -8.3809 21 6 4.5585 -4.8374 -8.1776 22 6 5.6458 -5.0905 -9.1384 23 7 6.9169 -4.7805 -8.8147 24 8 5.3967 -5.5790 -10.2239 25 7 4.7007 -4.2953 -6.9302 26 1 5.5375 -4.0155 -6.5271 27 6 3.4695 -1.2279 -3.0009 28 6 3.6671 -0.5084 -1.6434 29 1 -0.4849 0.8400 -0.0004 30 1 3.9444 -2.4428 1.1719 31 1 5.2337 -1.4967 0.3810 32 1 3.7297 -3.8221 -0.7654 33 1 5.3922 -3.8387 -0.1658 34 1 5.7894 -3.6174 -2.4331 35 1 5.6684 -1.8867 -1.9951 36 1 5.1009 -3.2454 -4.5602 37 1 1.4723 -4.7925 -7.0629 38 1 2.7837 -5.5380 -9.2686 39 1 7.1156 -4.3905 -7.9491 40 1 7.6330 -4.9475 -9.4474 41 1 4.0687 -0.7309 -3.7637 42 1 2.4178 -1.1826 -3.2841 43 1 3.0855 0.4134 -1.6597 44 1 4.7200 -0.2415 -1.5538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052713761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:33 Heat of formation + Delta-G solvation = 0.685383 kcal Electronic energy + Delta-G solvation = -27062.744155 eV Core-core repulsion = 23209.576423 eV Total energy + Delta-G solvation = -3853.167733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.81795 -39.80651 -39.07864 -37.86819 -34.94960 -34.31149 -33.02478 -31.66385 -31.28905 -30.85618 -29.56732 -26.46068 -24.93690 -23.98275 -23.19136 -21.78108 -20.81939 -20.56898 -20.15542 -19.55340 -19.18138 -17.58895 -17.12680 -16.61447 -16.17061 -15.70253 -15.35643 -15.05296 -14.80615 -14.53547 -14.36509 -14.19370 -14.05666 -13.53587 -13.32221 -13.21291 -12.94058 -12.82504 -12.65629 -12.00491 -11.93787 -11.87670 -11.06880 -10.93069 -10.79003 -10.58709 -10.50696 -10.34332 -10.30863 -10.09989 -9.92971 -9.71378 -9.59170 -9.42066 -8.95527 -8.60103 -8.43581 -6.77368 -5.98999 -3.42813 0.73019 1.95362 2.44196 2.93223 2.95237 3.08184 3.29540 3.31732 3.46034 3.51105 4.38309 4.52937 4.58252 4.83085 4.95606 4.97187 5.07226 5.23986 5.33795 5.37449 5.58452 5.73399 5.81629 5.85152 5.89022 6.01164 6.08722 6.15187 6.22654 6.23215 6.28197 6.48262 6.48972 6.54931 6.62238 6.65839 6.73492 6.79642 6.85916 6.87095 6.94643 7.48575 7.67176 8.09268 8.17981 8.38083 9.01055 9.71666 10.14819 11.16254 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.002898 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.696774 B = 9657.959853 C =10083.915513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.041 3.959 3 Si 0.876 3.124 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.270 4.270 8 H 0.075 0.925 9 N -0.600 5.600 10 C 0.135 3.865 11 C -0.131 4.131 12 C -0.119 4.119 13 C 0.155 3.845 14 H 0.099 0.901 15 N -0.727 5.727 16 C 0.576 3.424 17 O -0.504 6.504 18 C 0.002 3.998 19 C -0.126 4.126 20 C -0.113 4.113 21 C -0.034 4.034 22 C 0.595 3.405 23 N -0.855 5.855 24 O -0.526 6.526 25 N -0.524 5.524 26 H 0.414 0.586 27 C -0.149 4.149 28 C 0.153 3.847 29 H 0.263 0.737 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.385 0.615 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.396 0.604 40 H 0.409 0.591 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.180 -8.463 -13.394 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.398 4.398 8 H 0.093 0.907 9 N -0.323 5.323 10 C 0.011 3.989 11 C -0.170 4.170 12 C -0.157 4.157 13 C 0.053 3.947 14 H 0.117 0.883 15 N -0.378 5.378 16 C 0.361 3.639 17 O -0.377 6.377 18 C -0.116 4.116 19 C -0.152 4.152 20 C -0.139 4.139 21 C -0.150 4.150 22 C 0.380 3.620 23 N -0.419 5.419 24 O -0.401 6.401 25 N -0.122 5.122 26 H 0.252 0.748 27 C -0.191 4.191 28 C 0.025 3.975 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.218 0.782 37 H 0.177 0.823 38 H 0.174 0.826 39 H 0.224 0.776 40 H 0.241 0.759 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 15.944 -8.630 -13.599 22.663 hybrid contribution 1.712 1.336 0.090 2.173 sum 17.656 -7.294 -13.509 23.397 Atomic orbital electron populations 1.69905 1.06081 1.26759 1.50607 1.25534 0.94993 0.97806 0.97711 0.86919 0.80707 0.84850 0.76931 1.21442 1.22909 1.19480 1.18691 0.86903 0.94270 1.39950 0.90698 1.44196 1.07789 1.55833 1.24452 1.20455 0.91749 0.91532 0.95168 1.20866 1.00630 1.00204 0.95286 1.21312 0.96483 1.01521 0.96416 1.21296 0.98270 0.95977 0.79178 0.88271 1.46395 1.08920 1.64114 1.18367 1.17217 0.85801 0.78242 0.82672 1.90931 1.20297 1.54735 1.71728 1.20941 0.84815 1.09869 0.95957 1.21379 0.99823 1.01706 0.92292 1.21328 0.90403 1.02621 0.99578 1.20425 0.96157 1.11296 0.87160 1.17168 0.81766 0.77368 0.85658 1.43726 1.08784 1.67534 1.21853 1.90887 1.83041 1.43811 1.22333 1.41913 1.08678 1.48454 1.13199 0.74811 1.23235 1.01973 0.94134 0.99723 1.20618 0.96805 0.94113 0.85973 0.92686 0.91300 0.95103 0.91540 0.93319 0.92144 0.90822 0.78240 0.82341 0.82587 0.77613 0.75893 0.93217 0.91359 0.93780 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.97 55.49 0.78 -26.60 16 2 C 0.04 1.17 5.28 -17.43 -0.09 1.08 16 3 Si 0.88 22.02 25.26 -169.99 -4.29 17.72 16 4 H -0.29 -7.06 6.73 56.52 0.38 -6.68 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.27 -7.40 9.92 -15.06 -0.15 -7.55 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 N -0.60 -13.54 2.14 -175.08 -0.37 -13.91 16 10 C 0.13 2.43 6.11 -5.20 -0.03 2.40 16 11 C -0.13 -1.95 5.20 -30.18 -0.16 -2.10 16 12 C -0.12 -1.53 5.34 -28.40 -0.15 -1.68 16 13 C 0.16 2.42 2.22 -68.39 -0.15 2.27 16 14 H 0.10 1.95 6.27 -51.93 -0.33 1.63 16 15 N -0.73 -8.77 4.97 -55.37 -0.28 -9.04 16 16 C 0.58 8.33 7.76 -12.58 -0.10 8.23 16 17 O -0.50 -9.88 16.54 5.27 0.09 -9.79 16 18 C 0.00 0.02 7.04 -82.10 -0.58 -0.56 16 19 C -0.13 -1.47 10.60 -39.24 -0.42 -1.89 16 20 C -0.11 -1.18 10.60 -39.24 -0.42 -1.60 16 21 C -0.03 -0.32 7.04 -82.10 -0.58 -0.90 16 22 C 0.59 5.35 8.08 -12.58 -0.10 5.25 16 23 N -0.86 -3.74 8.87 30.40 0.27 -3.47 16 24 O -0.53 -6.79 17.71 5.27 0.09 -6.69 16 25 N -0.52 -4.01 5.90 -5.89 -0.03 -4.05 16 26 H 0.41 1.61 7.34 -40.82 -0.30 1.31 16 27 C -0.15 -2.73 5.98 -24.76 -0.15 -2.88 16 28 C 0.15 3.18 4.22 -4.67 -0.02 3.16 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.07 1.27 7.99 -51.93 -0.42 0.85 16 31 H 0.03 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.07 1.13 6.93 -51.93 -0.36 0.77 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 35 H 0.07 0.94 6.28 -51.93 -0.33 0.61 16 36 H 0.39 2.99 7.58 -40.82 -0.31 2.68 16 37 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.40 0.58 7.93 -40.82 -0.32 0.26 16 40 H 0.41 1.31 8.93 -40.82 -0.36 0.94 16 41 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 42 H 0.07 1.51 8.14 -51.92 -0.42 1.08 16 43 H 0.04 1.04 3.40 -51.93 -0.18 0.86 16 44 H 0.03 0.53 6.88 -51.93 -0.36 0.17 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -36.58 354.08 -7.28 -43.86 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.78 Total: 3.40 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -3.09 Total: 3.24 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.36 Total: -57.07 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.18 Total: -16.49 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.29 Total: 17.72 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.58 -7.28 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052713761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.546 kcal (2) G-P(sol) polarization free energy of solvation -36.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds