Wall clock time and date at job start Tue Mar 31 2020 12:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48499 * 109.47141 * 275.56620 * 3 2 1 5 5 H 1.48498 * 109.47510 * 35.56910 * 3 2 1 6 6 H 1.48504 * 109.47136 * 155.57250 * 3 2 1 7 7 C 1.38810 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00538 * 336.35097 * 7 2 1 9 9 N 1.36945 * 119.99769 * 156.34517 * 7 2 1 10 10 C 1.50170 * 120.53352 * 140.23302 * 9 7 2 11 11 C 1.46238 * 107.53109 * 109.56889 * 10 9 7 12 12 C 1.52531 * 114.27819 * 58.40397 * 11 10 9 13 13 C 1.50127 * 105.41659 * 270.59283 * 12 11 10 14 14 H 1.08997 * 109.20872 * 337.38847 * 13 12 11 15 15 N 1.46499 * 109.21054 * 218.02279 * 13 12 11 16 16 C 1.34776 * 119.99944 * 155.00036 * 15 13 12 17 17 O 1.21606 * 119.99996 * 0.02562 * 16 15 13 18 18 C 1.47291 * 119.99742 * 180.02562 * 16 15 13 19 19 C 1.37938 * 125.89568 * 180.02562 * 18 16 15 20 20 C 1.39452 * 107.45701 * 179.97438 * 19 18 16 21 21 C 1.37926 * 107.46261 * 0.02562 * 20 19 18 22 22 C 1.47292 * 125.89800 * 180.02562 * 21 20 19 23 23 N 1.34782 * 119.99890 * 179.97438 * 22 21 20 24 24 O 1.21611 * 120.00178 * 359.97438 * 22 21 20 25 25 N 1.36747 * 125.90459 * 0.02562 * 18 16 15 26 26 H 0.97005 * 125.65922 * 0.25810 * 25 18 16 27 27 C 1.54845 * 110.80937 * 97.68374 * 13 12 11 28 28 C 1.43429 * 120.54105 * 320.21216 * 9 7 2 29 29 H 0.96995 * 119.99666 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.84641 * 350.06087 * 10 9 7 31 31 H 1.09003 * 109.89924 * 229.10498 * 10 9 7 32 32 H 1.09001 * 108.52373 * 297.16545 * 11 10 9 33 33 H 1.09007 * 108.52335 * 179.64452 * 11 10 9 34 34 H 1.09004 * 110.24583 * 151.62408 * 12 11 10 35 35 H 1.08997 * 110.24787 * 29.56963 * 12 11 10 36 36 H 0.97005 * 119.99844 * 335.00852 * 15 13 12 37 37 H 1.07991 * 126.26854 * 0.02562 * 19 18 16 38 38 H 1.07994 * 126.26439 * 179.97438 * 20 19 18 39 39 H 0.97000 * 120.00100 * 359.97438 * 23 22 21 40 40 H 0.97003 * 119.99958 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.36204 * 81.33858 * 27 13 12 42 42 H 1.09008 * 109.35740 * 200.92586 * 27 13 12 43 43 H 1.09005 * 108.15672 * 33.30615 * 28 9 7 44 44 H 1.08992 * 108.16051 * 150.07893 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3800 2.1143 -1.3935 5 1 1.5114 2.6159 0.8144 6 1 3.6017 1.4091 0.5790 7 6 2.0103 -1.2021 0.0005 8 1 1.5384 -2.0980 0.3761 9 7 3.2934 -1.2521 -0.4753 10 6 4.3320 -2.0869 0.2173 11 6 4.6339 -3.2242 -0.6511 12 6 5.1379 -2.8379 -2.0379 13 6 3.9074 -2.7088 -2.8881 14 1 3.0997 -3.2878 -2.4403 15 7 4.1898 -3.2312 -4.2274 16 6 3.1839 -3.6922 -4.9969 17 8 2.0418 -3.6741 -4.5797 18 6 3.4680 -4.2178 -6.3431 19 6 2.5366 -4.7171 -7.2296 20 6 3.2209 -5.1056 -8.3809 21 6 4.5585 -4.8374 -8.1776 22 6 5.6458 -5.0905 -9.1384 23 7 6.9169 -4.7805 -8.8147 24 8 5.3967 -5.5790 -10.2239 25 7 4.7007 -4.2953 -6.9302 26 1 5.5375 -4.0155 -6.5271 27 6 3.4695 -1.2279 -3.0009 28 6 3.6671 -0.5084 -1.6434 29 1 -0.4849 0.8400 -0.0004 30 1 3.9444 -2.4428 1.1719 31 1 5.2337 -1.4967 0.3810 32 1 3.7297 -3.8221 -0.7654 33 1 5.3922 -3.8387 -0.1658 34 1 5.7894 -3.6174 -2.4331 35 1 5.6684 -1.8867 -1.9951 36 1 5.1009 -3.2454 -4.5602 37 1 1.4723 -4.7925 -7.0629 38 1 2.7837 -5.5380 -9.2686 39 1 7.1156 -4.3905 -7.9491 40 1 7.6330 -4.9475 -9.4474 41 1 4.0687 -0.7309 -3.7637 42 1 2.4178 -1.1826 -3.2841 43 1 3.0855 0.4134 -1.6597 44 1 4.7200 -0.2415 -1.5538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052713761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:32 Heat of formation + Delta-G solvation = -30.714634 kcal Electronic energy + Delta-G solvation = -27064.105762 eV Core-core repulsion = 23209.576423 eV Total energy + Delta-G solvation = -3854.529339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.66734 -40.93773 -39.96731 -39.22827 -36.42379 -34.93496 -34.63823 -33.10840 -32.75405 -31.98496 -30.53515 -28.08760 -26.10998 -25.44434 -24.58905 -22.79689 -21.82945 -21.69132 -21.14098 -20.97722 -20.06863 -18.50783 -18.33290 -17.83750 -17.65716 -16.97146 -16.54892 -16.24271 -16.02047 -15.79481 -15.54494 -15.21858 -15.13084 -14.88747 -14.74177 -14.50780 -14.23860 -13.91530 -13.78535 -13.71062 -13.56272 -13.31229 -12.67798 -12.43410 -12.23096 -12.09996 -11.79669 -11.66614 -11.58249 -11.48195 -11.26661 -11.16776 -10.86350 -10.57336 -10.22518 -10.18062 -9.46727 -8.65817 -8.19577 -5.59344 -0.12699 1.04591 1.31300 1.40237 1.52772 1.63475 2.03345 2.19508 2.23014 2.38445 2.43468 3.02885 3.36925 3.66476 3.84251 3.85791 3.98570 4.10936 4.15163 4.22493 4.36739 4.42779 4.55572 4.69269 4.73463 4.81446 4.89367 4.98497 5.02460 5.09526 5.17867 5.22447 5.29959 5.38344 5.41809 5.54053 5.60938 5.62681 5.75826 5.97022 6.06256 6.19211 6.32642 6.48746 7.04578 7.11952 7.12309 7.66677 8.10092 9.00675 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.002898 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.696774 B = 9657.959853 C =10083.915513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.024 4.024 3 Si 0.951 3.049 4 H -0.279 1.279 5 H -0.310 1.310 6 H -0.248 1.248 7 C -0.255 4.255 8 H 0.027 0.973 9 N -0.613 5.613 10 C 0.132 3.868 11 C -0.129 4.129 12 C -0.107 4.107 13 C 0.166 3.834 14 H 0.048 0.952 15 N -0.705 5.705 16 C 0.577 3.423 17 O -0.568 6.568 18 C -0.010 4.010 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.015 4.015 22 C 0.597 3.403 23 N -0.827 5.827 24 O -0.568 6.568 25 N -0.494 5.494 26 H 0.436 0.564 27 C -0.143 4.143 28 C 0.145 3.855 29 H 0.261 0.739 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.413 0.587 37 H 0.148 0.852 38 H 0.161 0.839 39 H 0.414 0.586 40 H 0.420 0.580 41 H 0.085 0.915 42 H 0.013 0.987 43 H 0.014 0.986 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.050 -8.131 -14.517 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.220 4.220 3 Si 0.779 3.221 4 H -0.207 1.207 5 H -0.239 1.239 6 H -0.171 1.171 7 C -0.386 4.386 8 H 0.045 0.955 9 N -0.337 5.337 10 C 0.010 3.990 11 C -0.168 4.168 12 C -0.144 4.144 13 C 0.062 3.938 14 H 0.066 0.934 15 N -0.357 5.357 16 C 0.364 3.636 17 O -0.446 6.446 18 C -0.128 4.128 19 C -0.164 4.164 20 C -0.156 4.156 21 C -0.134 4.134 22 C 0.382 3.618 23 N -0.392 5.392 24 O -0.446 6.446 25 N -0.094 5.094 26 H 0.278 0.722 27 C -0.185 4.185 28 C 0.018 3.982 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.250 0.750 37 H 0.165 0.835 38 H 0.179 0.821 39 H 0.245 0.755 40 H 0.254 0.746 41 H 0.104 0.896 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 21.994 -8.291 -14.699 27.722 hybrid contribution -0.070 1.089 0.388 1.158 sum 21.924 -7.202 -14.311 27.154 Atomic orbital electron populations 1.70066 1.08136 1.27435 1.53895 1.26237 0.95588 1.01755 0.98448 0.85718 0.79787 0.79598 0.77041 1.20680 1.23895 1.17125 1.18540 0.89234 0.92538 1.38259 0.95491 1.44349 1.06948 1.56667 1.25749 1.20670 0.91165 0.92199 0.94951 1.20763 1.00498 0.98876 0.96640 1.21313 0.95194 1.04039 0.93896 1.20944 0.98628 0.93260 0.81011 0.93392 1.46040 1.09944 1.62779 1.16896 1.17563 0.85151 0.77392 0.83498 1.90914 1.23038 1.57399 1.73267 1.20315 0.86293 1.11451 0.94737 1.21442 0.99830 1.02040 0.93110 1.21436 0.91203 1.03495 0.99487 1.20495 0.95994 1.09618 0.87264 1.17074 0.82770 0.77200 0.84767 1.43504 1.07307 1.65562 1.22825 1.90885 1.83798 1.45986 1.23951 1.41658 1.08412 1.47054 1.12273 0.72214 1.23130 0.99432 0.96508 0.99426 1.20743 0.98523 0.92872 0.86080 0.92990 0.92823 0.91748 0.94994 0.89352 0.87677 0.88939 0.74955 0.83459 0.82137 0.75461 0.74644 0.89616 0.96800 0.96807 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.92 13.97 21.65 0.30 -61.62 16 2 C -0.02 -1.44 5.28 84.86 0.45 -0.99 16 3 Si 0.95 46.56 25.26 68.60 1.73 48.30 16 4 H -0.28 -13.22 6.73 99.48 0.67 -12.55 16 5 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 6 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.26 -14.72 9.92 84.03 0.83 -13.89 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 N -0.61 -27.49 2.14 -707.85 -1.51 -29.01 16 10 C 0.13 4.48 6.11 83.58 0.51 4.99 16 11 C -0.13 -3.47 5.20 28.36 0.15 -3.32 16 12 C -0.11 -2.22 5.34 29.51 0.16 -2.06 16 13 C 0.17 4.92 2.22 44.70 0.10 5.02 16 14 H 0.05 1.97 6.27 -2.39 -0.01 1.96 16 15 N -0.70 -15.24 4.97 -447.36 -2.22 -17.46 16 16 C 0.58 16.59 7.76 86.62 0.67 17.27 16 17 O -0.57 -23.79 16.54 -4.05 -0.07 -23.86 16 18 C -0.01 -0.21 7.04 40.69 0.29 0.08 16 19 C -0.14 -3.25 10.60 22.49 0.24 -3.01 16 20 C -0.13 -2.63 10.60 22.49 0.24 -2.39 16 21 C -0.02 -0.25 7.04 40.68 0.29 0.04 16 22 C 0.60 8.96 8.08 86.62 0.70 9.66 16 23 N -0.83 -3.70 8.87 -175.98 -1.56 -5.26 16 24 O -0.57 -13.65 17.71 -4.07 -0.07 -13.72 16 25 N -0.49 -5.92 5.90 -172.56 -1.02 -6.94 16 26 H 0.44 1.13 7.34 -92.70 -0.68 0.45 16 27 C -0.14 -5.13 5.98 31.87 0.19 -4.94 16 28 C 0.15 5.76 4.22 87.60 0.37 6.13 16 29 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 30 H 0.05 1.94 7.99 -2.39 -0.02 1.92 16 31 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 32 H 0.03 1.09 6.93 -2.39 -0.02 1.07 16 33 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.10 1.33 7.85 -2.38 -0.02 1.31 16 35 H 0.09 1.69 6.28 -2.39 -0.01 1.67 16 36 H 0.41 4.29 7.58 -92.70 -0.70 3.59 16 37 H 0.15 3.70 8.06 -2.92 -0.02 3.67 16 38 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.41 -1.02 7.93 -92.71 -0.74 -1.75 16 40 H 0.42 0.94 8.93 -92.71 -0.83 0.11 16 41 H 0.09 2.41 8.12 -2.39 -0.02 2.39 16 42 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.01 0.64 3.40 -2.38 -0.01 0.63 16 44 H 0.07 2.27 6.88 -2.39 -0.02 2.25 16 Total: -1.00 -90.11 354.08 -1.13 -91.24 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -1.89 Total: 5.74 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 5.18 Total: 12.58 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -6.01 Total: -120.29 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.14 Total: -37.58 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.73 Total: 48.30 kcal Total: -90.11 -1.13 -91.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052713761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.530 kcal (2) G-P(sol) polarization free energy of solvation -90.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds