Wall clock time and date at job start Tue Mar 31 2020 12:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00392 * 2 1 4 4 H 1.48498 * 109.46984 * 274.99925 * 3 2 1 5 5 H 1.48504 * 109.46848 * 34.99458 * 3 2 1 6 6 H 1.48497 * 109.47221 * 154.99642 * 3 2 1 7 7 C 1.38815 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99698 * 206.21233 * 7 2 1 9 9 N 1.36937 * 120.00231 * 26.49513 * 7 2 1 10 10 C 1.44586 * 118.63915 * 5.37129 * 9 7 2 11 11 C 1.54861 * 109.60117 * 270.70818 * 10 9 7 12 12 C 1.47095 * 110.32672 * 288.73455 * 11 10 9 13 13 C 1.52567 * 114.32313 * 62.80181 * 12 11 10 14 14 H 1.09004 * 109.49081 * 34.97510 * 13 12 11 15 15 N 1.46498 * 109.48890 * 155.02178 * 13 12 11 16 16 C 1.34781 * 120.00107 * 204.99732 * 15 13 12 17 17 O 1.21614 * 119.99728 * 0.02562 * 16 15 13 18 18 C 1.47286 * 120.00140 * 180.02562 * 16 15 13 19 19 C 1.37928 * 125.90343 * 180.02562 * 18 16 15 20 20 C 1.39445 * 107.46361 * 179.97438 * 19 18 16 21 21 C 1.37933 * 107.46342 * 0.02562 * 20 19 18 22 22 C 1.47287 * 125.90411 * 180.02562 * 21 20 19 23 23 N 1.34774 * 120.00244 * 179.97438 * 22 21 20 24 24 O 1.21620 * 119.99869 * 359.97045 * 22 21 20 25 25 N 1.36759 * 125.89711 * 359.71972 * 18 16 15 26 26 H 0.96998 * 125.66551 * 359.97438 * 25 18 16 27 27 C 1.50887 * 109.36137 * 274.99235 * 13 12 11 28 28 C 1.47597 * 118.64534 * 185.11406 * 9 7 2 29 29 H 0.97006 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.44896 * 30.75313 * 10 9 7 31 31 H 1.09002 * 109.44271 * 150.67322 * 10 9 7 32 32 H 1.08998 * 109.32751 * 49.00267 * 11 10 9 33 33 H 1.09004 * 109.32641 * 168.64917 * 11 10 9 34 34 H 1.08997 * 108.51442 * 184.05612 * 12 11 10 35 35 H 1.09000 * 108.51125 * 301.70913 * 12 11 10 36 36 H 0.97001 * 119.99955 * 25.00487 * 15 13 12 37 37 H 1.07998 * 126.26600 * 359.97438 * 19 18 16 38 38 H 1.07996 * 126.26916 * 179.97438 * 20 19 18 39 39 H 0.97003 * 119.99912 * 359.97438 * 23 22 21 40 40 H 0.97002 * 120.00000 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.36336 * 212.08258 * 27 13 12 42 42 H 1.09001 * 109.36262 * 331.69220 * 27 13 12 43 43 H 1.09002 * 108.94467 * 258.57205 * 28 9 7 44 44 H 1.08999 * 108.94825 * 17.19386 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3921 2.1073 -1.3947 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4119 0.5918 7 6 2.0101 -1.2022 0.0005 8 1 3.0068 -1.2501 0.4137 9 7 1.4333 -2.3261 -0.5280 10 6 0.1506 -2.2036 -1.1839 11 6 -0.9835 -2.3934 -0.1467 12 6 -1.0577 -3.7998 0.2778 13 6 0.1929 -4.3085 0.9884 14 1 0.6239 -3.5051 1.5859 15 7 -0.1629 -5.4299 1.8613 16 6 0.6015 -5.7186 2.9331 17 8 1.5865 -5.0479 3.1758 18 6 0.2441 -6.8465 3.8104 19 6 0.9358 -7.2479 4.9341 20 6 0.2638 -8.3465 5.4689 21 6 -0.8265 -8.5977 4.6623 22 6 -1.8156 -9.6716 4.8566 23 7 -2.8400 -9.8089 3.9917 24 8 -1.7078 -10.4346 5.7975 25 7 -0.8343 -7.6729 3.6547 26 1 -1.4942 -7.6143 2.9461 27 6 1.1991 -4.7686 -0.0376 28 6 2.1493 -3.6113 -0.4097 29 1 -0.4850 0.8401 -0.0004 30 1 0.0672 -1.2155 -1.6363 31 1 0.0651 -2.9655 -1.9587 32 1 -0.7873 -1.7643 0.7215 33 1 -1.9342 -2.1038 -0.5946 34 1 -1.9082 -3.9142 0.9497 35 1 -1.2283 -4.4187 -0.6031 36 1 -0.9487 -5.9648 1.6678 37 1 1.8334 -6.7944 5.3277 38 1 0.5459 -8.9000 6.3523 39 1 -2.9261 -9.2002 3.2413 40 1 -3.4911 -10.5164 4.1195 41 1 1.7794 -5.5958 0.3710 42 1 0.6749 -5.1045 -0.9324 43 1 2.6315 -3.8367 -1.3608 44 1 2.9151 -3.5203 0.3606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052713762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:36 Heat of formation + Delta-G solvation = 4.067205 kcal Electronic energy + Delta-G solvation = -27174.475761 eV Core-core repulsion = 23321.454676 eV Total energy + Delta-G solvation = -3853.021086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78422 -39.72736 -38.99212 -37.54041 -34.90354 -34.27832 -32.51047 -31.88451 -31.31686 -30.22830 -29.30456 -26.22474 -24.75243 -23.76993 -23.04977 -21.67171 -20.76493 -20.39556 -20.06338 -19.21652 -19.03500 -17.52625 -17.06270 -16.63857 -15.79328 -15.67598 -15.31158 -14.97375 -14.76747 -14.32827 -14.13620 -14.03012 -13.77585 -13.45602 -13.24507 -12.98562 -12.92011 -12.60732 -12.15759 -12.02089 -11.69438 -11.20748 -10.90481 -10.75885 -10.70995 -10.29834 -10.27541 -10.12841 -9.98362 -9.90725 -9.74390 -9.68012 -9.39491 -9.29077 -8.95771 -8.56892 -8.24706 -6.84435 -5.71024 -3.02618 0.76355 1.98235 2.47990 2.96697 2.98087 3.15191 3.33284 3.43048 3.51477 3.52624 4.41679 4.54471 4.64108 4.98189 5.00275 5.23745 5.34647 5.41372 5.59049 5.61296 5.82271 5.86627 5.97566 6.04007 6.10502 6.14910 6.25934 6.37393 6.50705 6.54248 6.60633 6.66000 6.75238 6.79350 6.84658 6.90075 7.02889 7.09272 7.20521 7.56579 7.70060 7.70298 7.80739 8.16195 8.23158 8.39784 9.31834 9.93081 10.32396 11.28378 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.002786 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.532274 B =10049.147873 C =10449.117978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.004 4.004 3 Si 0.893 3.107 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.599 5.599 10 C 0.184 3.816 11 C -0.123 4.123 12 C -0.109 4.109 13 C 0.154 3.846 14 H 0.108 0.892 15 N -0.724 5.724 16 C 0.577 3.423 17 O -0.508 6.508 18 C 0.003 3.997 19 C -0.127 4.127 20 C -0.113 4.113 21 C -0.034 4.034 22 C 0.595 3.405 23 N -0.855 5.855 24 O -0.526 6.526 25 N -0.523 5.523 26 H 0.415 0.585 27 C -0.139 4.139 28 C 0.154 3.846 29 H 0.249 0.751 30 H 0.080 0.920 31 H 0.002 0.998 32 H 0.107 0.893 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.384 0.616 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.397 0.603 40 H 0.409 0.591 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.018 0.982 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.320 -17.629 3.335 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.200 4.200 3 Si 0.723 3.277 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.322 5.322 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.148 4.148 13 C 0.051 3.949 14 H 0.126 0.874 15 N -0.374 5.374 16 C 0.362 3.638 17 O -0.382 6.382 18 C -0.115 4.115 19 C -0.153 4.153 20 C -0.140 4.140 21 C -0.151 4.151 22 C 0.381 3.619 23 N -0.419 5.419 24 O -0.402 6.402 25 N -0.122 5.122 26 H 0.253 0.747 27 C -0.179 4.179 28 C 0.028 3.972 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.020 0.980 32 H 0.125 0.875 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.216 0.784 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.224 0.776 40 H 0.241 0.759 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.571 -17.392 4.038 19.026 hybrid contribution -0.838 0.562 -0.816 1.298 sum -7.409 -16.831 3.223 18.669 Atomic orbital electron populations 1.70290 1.04816 1.24608 1.54670 1.24660 0.95301 0.97806 1.02232 0.86383 0.79498 0.84400 0.77397 1.21818 1.22169 1.20686 1.19408 0.98007 0.86433 1.33852 0.90837 1.44079 1.20145 1.02934 1.65043 1.20705 0.83323 0.98967 0.91192 1.21430 0.98541 0.92094 1.04215 1.20831 0.95017 1.00744 0.98159 1.20627 0.95846 0.87272 0.91114 0.87416 1.46304 1.28967 1.34434 1.27660 1.17181 0.83763 0.82643 0.80209 1.90901 1.26129 1.49373 1.71766 1.20952 0.92187 0.96936 1.01425 1.21353 1.01464 0.97698 0.94777 1.21319 0.93974 0.98340 1.00350 1.20429 1.02315 0.96903 0.95406 1.17167 0.80089 0.82696 0.81998 1.43726 1.29890 1.37435 1.30813 1.90886 1.74794 1.43820 1.30656 1.41934 1.22475 1.24421 1.23365 0.74748 1.22302 0.98406 0.99366 0.97862 1.21148 0.93313 0.84934 0.97844 0.94030 0.90198 0.98020 0.87495 0.94436 0.94092 0.94042 0.78356 0.82389 0.82613 0.77573 0.75896 0.92501 0.92879 0.96389 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 8.06 55.49 0.45 -23.62 16 2 C 0.00 -0.10 4.84 -17.43 -0.08 -0.18 16 3 Si 0.89 21.48 29.63 -169.99 -5.04 16.45 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.61 9.58 -15.06 -0.14 -6.75 16 8 H 0.07 1.98 7.82 -52.49 -0.41 1.57 16 9 N -0.60 -14.26 2.29 -171.88 -0.39 -14.66 16 10 C 0.18 4.18 4.96 -4.08 -0.02 4.16 16 11 C -0.12 -2.55 4.77 -28.58 -0.14 -2.69 16 12 C -0.11 -1.82 4.70 -29.79 -0.14 -1.96 16 13 C 0.15 2.64 2.06 -69.21 -0.14 2.50 16 14 H 0.11 2.41 6.92 -51.93 -0.36 2.05 16 15 N -0.72 -9.56 4.93 -56.18 -0.28 -9.83 16 16 C 0.58 8.60 7.63 -12.58 -0.10 8.50 16 17 O -0.51 -9.91 16.54 5.27 0.09 -9.82 16 18 C 0.00 0.03 7.04 -82.10 -0.58 -0.54 16 19 C -0.13 -1.49 10.60 -39.25 -0.42 -1.91 16 20 C -0.11 -1.21 10.60 -39.24 -0.42 -1.62 16 21 C -0.03 -0.33 7.04 -82.10 -0.58 -0.91 16 22 C 0.59 5.54 8.08 -12.58 -0.10 5.44 16 23 N -0.85 -4.10 8.87 30.40 0.27 -3.83 16 24 O -0.53 -6.92 17.71 5.26 0.09 -6.83 16 25 N -0.52 -4.27 5.90 -5.89 -0.03 -4.31 16 26 H 0.41 1.91 7.34 -40.82 -0.30 1.61 16 27 C -0.14 -2.37 5.39 -27.12 -0.15 -2.51 16 28 C 0.15 3.15 6.28 -2.77 -0.02 3.13 16 29 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.08 2.05 6.00 -51.93 -0.31 1.74 16 31 H 0.00 0.03 8.06 -51.93 -0.42 -0.39 16 32 H 0.11 2.67 6.25 -51.93 -0.32 2.34 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.61 8.04 -51.93 -0.42 0.19 16 35 H 0.04 0.62 7.35 -51.93 -0.38 0.24 16 36 H 0.38 3.54 7.70 -40.82 -0.31 3.23 16 37 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.40 0.80 7.93 -40.82 -0.32 0.48 16 40 H 0.41 1.46 8.93 -40.82 -0.36 1.10 16 41 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 42 H 0.05 0.83 7.31 -51.93 -0.38 0.46 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 1.14 7.80 -51.93 -0.41 0.73 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -32.97 354.82 -8.46 -41.43 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.94 Total: 5.01 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -3.02 Total: 4.66 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.01 Total: -56.25 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.18 Total: -16.65 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.04 Total: 16.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.97 -8.46 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052713762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.494 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds