Wall clock time and date at job start Tue Mar 31 2020 12:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00392 * 2 1 4 4 H 1.48498 * 109.46984 * 274.99925 * 3 2 1 5 5 H 1.48504 * 109.46848 * 34.99458 * 3 2 1 6 6 H 1.48497 * 109.47221 * 154.99642 * 3 2 1 7 7 C 1.38815 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99698 * 206.21233 * 7 2 1 9 9 N 1.36937 * 120.00231 * 26.49513 * 7 2 1 10 10 C 1.44586 * 118.63915 * 5.37129 * 9 7 2 11 11 C 1.54861 * 109.60117 * 270.70818 * 10 9 7 12 12 C 1.47095 * 110.32672 * 288.73455 * 11 10 9 13 13 C 1.52567 * 114.32313 * 62.80181 * 12 11 10 14 14 H 1.09004 * 109.49081 * 34.97510 * 13 12 11 15 15 N 1.46498 * 109.48890 * 155.02178 * 13 12 11 16 16 C 1.34781 * 120.00107 * 204.99732 * 15 13 12 17 17 O 1.21614 * 119.99728 * 0.02562 * 16 15 13 18 18 C 1.47286 * 120.00140 * 180.02562 * 16 15 13 19 19 C 1.37928 * 125.90343 * 180.02562 * 18 16 15 20 20 C 1.39445 * 107.46361 * 179.97438 * 19 18 16 21 21 C 1.37933 * 107.46342 * 0.02562 * 20 19 18 22 22 C 1.47287 * 125.90411 * 180.02562 * 21 20 19 23 23 N 1.34774 * 120.00244 * 179.97438 * 22 21 20 24 24 O 1.21620 * 119.99869 * 359.97045 * 22 21 20 25 25 N 1.36759 * 125.89711 * 359.71972 * 18 16 15 26 26 H 0.96998 * 125.66551 * 359.97438 * 25 18 16 27 27 C 1.50887 * 109.36137 * 274.99235 * 13 12 11 28 28 C 1.47597 * 118.64534 * 185.11406 * 9 7 2 29 29 H 0.97006 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.44896 * 30.75313 * 10 9 7 31 31 H 1.09002 * 109.44271 * 150.67322 * 10 9 7 32 32 H 1.08998 * 109.32751 * 49.00267 * 11 10 9 33 33 H 1.09004 * 109.32641 * 168.64917 * 11 10 9 34 34 H 1.08997 * 108.51442 * 184.05612 * 12 11 10 35 35 H 1.09000 * 108.51125 * 301.70913 * 12 11 10 36 36 H 0.97001 * 119.99955 * 25.00487 * 15 13 12 37 37 H 1.07998 * 126.26600 * 359.97438 * 19 18 16 38 38 H 1.07996 * 126.26916 * 179.97438 * 20 19 18 39 39 H 0.97003 * 119.99912 * 359.97438 * 23 22 21 40 40 H 0.97002 * 120.00000 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.36336 * 212.08258 * 27 13 12 42 42 H 1.09001 * 109.36262 * 331.69220 * 27 13 12 43 43 H 1.09002 * 108.94467 * 258.57205 * 28 9 7 44 44 H 1.08999 * 108.94825 * 17.19386 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3921 2.1073 -1.3947 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4119 0.5918 7 6 2.0101 -1.2022 0.0005 8 1 3.0068 -1.2501 0.4137 9 7 1.4333 -2.3261 -0.5280 10 6 0.1506 -2.2036 -1.1839 11 6 -0.9835 -2.3934 -0.1467 12 6 -1.0577 -3.7998 0.2778 13 6 0.1929 -4.3085 0.9884 14 1 0.6239 -3.5051 1.5859 15 7 -0.1629 -5.4299 1.8613 16 6 0.6015 -5.7186 2.9331 17 8 1.5865 -5.0479 3.1758 18 6 0.2441 -6.8465 3.8104 19 6 0.9358 -7.2479 4.9341 20 6 0.2638 -8.3465 5.4689 21 6 -0.8265 -8.5977 4.6623 22 6 -1.8156 -9.6716 4.8566 23 7 -2.8400 -9.8089 3.9917 24 8 -1.7078 -10.4346 5.7975 25 7 -0.8343 -7.6729 3.6547 26 1 -1.4942 -7.6143 2.9461 27 6 1.1991 -4.7686 -0.0376 28 6 2.1493 -3.6113 -0.4097 29 1 -0.4850 0.8401 -0.0004 30 1 0.0672 -1.2155 -1.6363 31 1 0.0651 -2.9655 -1.9587 32 1 -0.7873 -1.7643 0.7215 33 1 -1.9342 -2.1038 -0.5946 34 1 -1.9082 -3.9142 0.9497 35 1 -1.2283 -4.4187 -0.6031 36 1 -0.9487 -5.9648 1.6678 37 1 1.8334 -6.7944 5.3277 38 1 0.5459 -8.9000 6.3523 39 1 -2.9261 -9.2002 3.2413 40 1 -3.4911 -10.5164 4.1195 41 1 1.7794 -5.5958 0.3710 42 1 0.6749 -5.1045 -0.9324 43 1 2.6315 -3.8367 -1.3608 44 1 2.9151 -3.5203 0.3606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052713762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:35 Heat of formation + Delta-G solvation = -21.550704 kcal Electronic energy + Delta-G solvation = -27175.586637 eV Core-core repulsion = 23321.454676 eV Total energy + Delta-G solvation = -3854.131962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.64664 -40.88303 -39.91380 -39.04014 -36.45191 -34.92504 -34.04339 -33.54715 -32.27917 -31.64319 -30.44009 -27.93583 -26.05979 -25.20489 -24.54585 -22.67416 -21.78069 -21.60952 -20.98853 -20.86350 -20.00977 -18.52646 -18.26668 -17.81401 -17.23061 -17.07029 -16.53378 -16.00216 -15.96042 -15.66131 -15.44022 -15.18713 -15.08944 -14.83582 -14.53128 -14.31188 -13.82359 -13.77684 -13.75870 -13.70292 -13.27508 -13.02799 -12.69433 -12.37552 -12.12678 -11.85422 -11.68536 -11.60937 -11.49237 -11.39337 -11.13195 -11.02010 -10.85989 -10.30490 -10.20229 -10.15618 -9.45129 -8.74559 -7.73874 -5.05727 -0.10713 1.06822 1.47222 1.51008 1.57541 1.65883 2.03674 2.20886 2.25220 2.39315 2.56465 3.28211 3.65856 3.74906 3.84454 3.86012 4.13413 4.16709 4.21262 4.37286 4.51026 4.58052 4.69748 4.76064 4.89481 4.95901 5.04620 5.11184 5.21961 5.24374 5.30030 5.37022 5.44708 5.53100 5.58795 5.63945 5.68535 5.76253 5.90680 6.06463 6.32632 6.37236 6.40696 6.50415 7.12155 7.12763 7.30482 8.03478 8.33703 9.21460 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.002786 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.532274 B =10049.147873 C =10449.117978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.045 4.045 3 Si 0.945 3.055 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.282 1.282 7 C -0.262 4.262 8 H 0.059 0.941 9 N -0.610 5.610 10 C 0.185 3.815 11 C -0.110 4.110 12 C -0.104 4.104 13 C 0.165 3.835 14 H 0.051 0.949 15 N -0.705 5.705 16 C 0.580 3.420 17 O -0.564 6.564 18 C -0.010 4.010 19 C -0.134 4.134 20 C -0.129 4.129 21 C -0.017 4.017 22 C 0.597 3.403 23 N -0.828 5.828 24 O -0.568 6.568 25 N -0.497 5.497 26 H 0.434 0.566 27 C -0.127 4.127 28 C 0.150 3.850 29 H 0.244 0.756 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.409 0.591 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.414 0.586 40 H 0.420 0.580 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.031 0.969 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.401 -20.023 2.311 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.240 4.240 3 Si 0.775 3.225 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.207 1.207 7 C -0.392 4.392 8 H 0.077 0.923 9 N -0.334 5.334 10 C 0.060 3.940 11 C -0.151 4.151 12 C -0.142 4.142 13 C 0.061 3.939 14 H 0.069 0.931 15 N -0.356 5.356 16 C 0.367 3.633 17 O -0.441 6.441 18 C -0.128 4.128 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.136 4.136 22 C 0.382 3.618 23 N -0.393 5.393 24 O -0.446 6.446 25 N -0.097 5.097 26 H 0.276 0.724 27 C -0.167 4.167 28 C 0.025 3.975 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.246 0.754 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.245 0.755 40 H 0.253 0.747 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.049 0.951 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.735 -19.817 2.936 21.855 hybrid contribution -0.213 1.264 -0.490 1.372 sum -8.948 -18.553 2.446 20.743 Atomic orbital electron populations 1.70467 1.05258 1.24446 1.55058 1.25197 0.96122 0.99826 1.02839 0.85574 0.78360 0.81498 0.77042 1.21677 1.22543 1.20732 1.19502 0.97668 0.88026 1.34014 0.92268 1.44192 1.20732 1.03428 1.64999 1.20626 0.83537 0.97808 0.92067 1.21131 0.97907 0.94229 1.01788 1.20668 0.95348 0.98315 0.99894 1.20194 0.96104 0.86996 0.90646 0.93115 1.45928 1.29564 1.33493 1.26619 1.17488 0.82924 0.82628 0.80298 1.90883 1.28639 1.51474 1.73131 1.20345 0.93917 0.97180 1.01389 1.21441 1.01540 0.98070 0.95011 1.21447 0.94595 0.98355 1.01148 1.20510 1.01730 0.96498 0.94820 1.17091 0.80652 0.82028 0.82064 1.43519 1.28320 1.37464 1.29982 1.90882 1.75895 1.45219 1.32615 1.41711 1.21688 1.22925 1.23347 0.72396 1.22168 0.97848 0.97791 0.98866 1.21245 0.93613 0.84993 0.97683 0.94611 0.93806 0.95470 0.92042 0.93809 0.91733 0.90720 0.75409 0.83054 0.82031 0.75537 0.74669 0.91672 0.90147 0.95136 0.95240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.91 8.06 21.65 0.17 -49.74 16 2 C -0.04 -2.45 4.84 84.86 0.41 -2.03 16 3 Si 0.94 45.36 29.63 68.60 2.03 47.39 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.26 -14.45 9.58 84.03 0.81 -13.64 16 8 H 0.06 3.35 7.82 -2.91 -0.02 3.32 16 9 N -0.61 -29.46 2.29 -697.70 -1.60 -31.05 16 10 C 0.19 8.34 4.96 87.37 0.43 8.77 16 11 C -0.11 -4.50 4.77 29.39 0.14 -4.36 16 12 C -0.10 -3.16 4.70 28.61 0.13 -3.03 16 13 C 0.16 5.43 2.06 44.16 0.09 5.52 16 14 H 0.05 2.32 6.92 -2.38 -0.02 2.31 16 15 N -0.70 -16.96 4.93 -449.91 -2.22 -19.18 16 16 C 0.58 16.82 7.63 86.62 0.66 17.48 16 17 O -0.56 -22.68 16.54 -4.07 -0.07 -22.75 16 18 C -0.01 -0.22 7.04 40.68 0.29 0.07 16 19 C -0.13 -3.10 10.60 22.49 0.24 -2.86 16 20 C -0.13 -2.60 10.60 22.49 0.24 -2.36 16 21 C -0.02 -0.29 7.04 40.68 0.29 0.00 16 22 C 0.60 9.45 8.08 86.62 0.70 10.15 16 23 N -0.83 -4.74 8.87 -175.98 -1.56 -6.30 16 24 O -0.57 -13.95 17.71 -4.09 -0.07 -14.02 16 25 N -0.50 -6.54 5.90 -172.56 -1.02 -7.56 16 26 H 0.43 2.01 7.34 -92.71 -0.68 1.33 16 27 C -0.13 -4.05 5.39 30.34 0.16 -3.89 16 28 C 0.15 6.13 6.28 86.61 0.54 6.68 16 29 H 0.24 13.25 8.31 -92.70 -0.77 12.48 16 30 H 0.04 2.28 6.00 -2.39 -0.01 2.26 16 31 H 0.03 1.07 8.06 -2.39 -0.02 1.05 16 32 H 0.06 3.12 6.25 -2.39 -0.01 3.11 16 33 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.06 1.67 8.04 -2.39 -0.02 1.66 16 35 H 0.07 1.84 7.35 -2.39 -0.02 1.83 16 36 H 0.41 5.77 7.70 -92.71 -0.71 5.06 16 37 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 39 H 0.41 -0.32 7.93 -92.71 -0.74 -1.05 16 40 H 0.42 1.42 8.93 -92.71 -0.83 0.60 16 41 H 0.06 1.99 7.85 -2.39 -0.02 1.97 16 42 H 0.08 2.17 7.31 -2.39 -0.02 2.15 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.03 1.31 7.80 -2.39 -0.02 1.29 16 Total: -1.00 -76.38 354.82 -1.06 -77.45 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -1.87 Total: 9.28 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 5.13 Total: 16.48 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -6.22 Total: -113.82 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.14 Total: -36.77 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -76.38 -1.06 -77.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052713762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.895 kcal (2) G-P(sol) polarization free energy of solvation -76.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds