Wall clock time and date at job start Tue Mar 31 2020 12:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00392 * 2 1 4 4 H 1.48498 * 109.46984 * 274.99925 * 3 2 1 5 5 H 1.48504 * 109.46848 * 34.99458 * 3 2 1 6 6 H 1.48497 * 109.47221 * 154.99642 * 3 2 1 7 7 C 1.38815 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00226 * 206.21240 * 7 2 1 9 9 N 1.36937 * 120.00231 * 26.49513 * 7 2 1 10 10 C 1.44586 * 118.63915 * 5.37129 * 9 7 2 11 11 C 1.54861 * 109.60117 * 270.70818 * 10 9 7 12 12 C 1.47095 * 110.32672 * 288.73455 * 11 10 9 13 13 C 1.52567 * 114.32313 * 62.80181 * 12 11 10 14 14 H 1.09001 * 109.49290 * 34.95227 * 13 12 11 15 15 N 1.46497 * 109.48837 * 155.00104 * 13 12 11 16 16 C 1.34776 * 119.99724 * 205.00135 * 15 13 12 17 17 O 1.21677 * 120.00452 * 359.97438 * 16 15 13 18 18 C 1.46814 * 120.00063 * 180.02562 * 16 15 13 19 19 C 1.36353 * 125.85384 * 179.97438 * 18 16 15 20 20 C 1.41301 * 107.01105 * 180.02562 * 19 18 16 21 21 C 1.47390 * 126.45994 * 180.02562 * 20 19 18 22 22 N 1.34772 * 120.00070 * 179.97438 * 21 20 19 23 23 O 1.21614 * 120.00274 * 359.97438 * 21 20 19 24 24 C 1.38206 * 107.07724 * 359.97438 * 20 19 18 25 25 N 1.34259 * 108.39352 * 359.73669 * 24 20 19 26 26 H 0.97002 * 125.39360 * 180.29240 * 25 24 20 27 27 C 1.50887 * 109.36137 * 274.99235 * 13 12 11 28 28 C 1.47597 * 118.64534 * 185.11406 * 9 7 2 29 29 H 0.97006 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.44896 * 30.75313 * 10 9 7 31 31 H 1.09002 * 109.44271 * 150.67322 * 10 9 7 32 32 H 1.08998 * 109.32751 * 49.00267 * 11 10 9 33 33 H 1.09004 * 109.32641 * 168.64917 * 11 10 9 34 34 H 1.08997 * 108.51442 * 184.05612 * 12 11 10 35 35 H 1.08998 * 108.51264 * 301.54992 * 12 11 10 36 36 H 0.96996 * 120.00136 * 25.00046 * 15 13 12 37 37 H 1.07999 * 126.48940 * 0.02562 * 19 18 16 38 38 H 0.97001 * 120.00224 * 0.02562 * 22 21 20 39 39 H 0.96999 * 120.00452 * 180.02562 * 22 21 20 40 40 H 1.07997 * 125.80428 * 179.97438 * 24 20 19 41 41 H 1.08997 * 109.36336 * 212.08258 * 27 13 12 42 42 H 1.09001 * 109.36262 * 331.69220 * 27 13 12 43 43 H 1.09002 * 108.94467 * 258.57205 * 28 9 7 44 44 H 1.08999 * 108.94825 * 17.19386 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3921 2.1073 -1.3947 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4119 0.5918 7 6 2.0101 -1.2022 0.0005 8 1 3.0068 -1.2502 0.4137 9 7 1.4333 -2.3261 -0.5280 10 6 0.1506 -2.2036 -1.1839 11 6 -0.9835 -2.3934 -0.1467 12 6 -1.0577 -3.7998 0.2778 13 6 0.1929 -4.3085 0.9884 14 1 0.6242 -3.5050 1.5856 15 7 -0.1630 -5.4296 1.8616 16 6 0.6015 -5.7180 2.9334 17 8 1.5876 -5.0475 3.1756 18 6 0.2452 -6.8419 3.8083 19 6 0.9304 -7.2381 4.9186 20 6 0.2431 -8.3510 5.4532 21 6 0.6162 -9.1152 6.6570 22 7 -0.1376 -10.1601 7.0524 23 8 1.6042 -8.8029 7.2936 24 6 -0.8454 -8.5871 4.6350 25 7 -0.8424 -7.6731 3.6516 26 1 -1.5004 -7.6095 2.9416 27 6 1.1991 -4.7686 -0.0376 28 6 2.1493 -3.6113 -0.4097 29 1 -0.4850 0.8401 -0.0004 30 1 0.0672 -1.2155 -1.6363 31 1 0.0651 -2.9655 -1.9587 32 1 -0.7873 -1.7643 0.7215 33 1 -1.9342 -2.1038 -0.5946 34 1 -1.9082 -3.9142 0.9497 35 1 -1.2311 -4.4184 -0.6027 36 1 -0.9489 -5.9643 1.6685 37 1 1.8282 -6.7869 5.3143 38 1 -0.9255 -10.4095 6.5445 39 1 0.1076 -10.6628 7.8449 40 1 -1.5766 -9.3710 4.7667 41 1 1.7794 -5.5958 0.3710 42 1 0.6749 -5.1045 -0.9324 43 1 2.6315 -3.8367 -1.3608 44 1 2.9151 -3.5203 0.3606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052825933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:52 Heat of formation + Delta-G solvation = 3.303412 kcal Electronic energy + Delta-G solvation = -27051.027071 eV Core-core repulsion = 23197.972865 eV Total energy + Delta-G solvation = -3853.054206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.79829 -39.53846 -38.89013 -37.49211 -34.82958 -33.91881 -32.42851 -31.84398 -31.44389 -30.16656 -29.16318 -26.14474 -24.39122 -23.60125 -23.27368 -22.28273 -20.40537 -20.21944 -19.81196 -19.17162 -18.83109 -17.17830 -16.63781 -16.50053 -15.87244 -15.66702 -15.49274 -15.19473 -14.60244 -14.20327 -14.02693 -13.89754 -13.68568 -13.51137 -13.47513 -13.12686 -12.66335 -12.55144 -12.11678 -11.97896 -11.64551 -11.16991 -10.83897 -10.68186 -10.31648 -10.26413 -10.07702 -9.93674 -9.93515 -9.86127 -9.69997 -9.63558 -9.38509 -9.25492 -8.89630 -8.58077 -8.21362 -6.80951 -5.67758 -2.99233 1.21509 1.65632 2.64281 3.16984 3.23268 3.45678 3.46127 3.49594 3.53874 3.55382 4.44103 4.57626 4.62784 4.78031 4.98438 5.27948 5.38097 5.45328 5.56479 5.63584 5.75791 5.87556 6.01882 6.08554 6.14983 6.20553 6.41941 6.45798 6.54659 6.59193 6.66007 6.78171 6.83230 6.87373 6.90801 7.07440 7.12954 7.13363 7.24138 7.65585 7.73549 7.84069 8.11613 8.19725 8.33992 8.43129 9.35161 9.96459 10.35823 11.31689 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.002741 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.867629 B =10211.943287 C =10751.692666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.004 4.004 3 Si 0.893 3.107 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.599 5.599 10 C 0.184 3.816 11 C -0.123 4.123 12 C -0.109 4.109 13 C 0.155 3.845 14 H 0.107 0.893 15 N -0.725 5.725 16 C 0.580 3.420 17 O -0.513 6.513 18 C -0.049 4.049 19 C -0.049 4.049 20 C -0.238 4.238 21 C 0.594 3.406 22 N -0.857 5.857 23 O -0.543 6.543 24 C 0.066 3.934 25 N -0.523 5.523 26 H 0.421 0.579 27 C -0.139 4.139 28 C 0.154 3.846 29 H 0.249 0.751 30 H 0.080 0.920 31 H 0.001 0.999 32 H 0.107 0.893 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.384 0.616 37 H 0.159 0.841 38 H 0.397 0.603 39 H 0.403 0.597 40 H 0.179 0.821 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.018 0.982 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 -21.422 5.497 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.200 4.200 3 Si 0.723 3.277 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.092 0.908 9 N -0.322 5.322 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.147 4.147 13 C 0.052 3.948 14 H 0.125 0.875 15 N -0.375 5.375 16 C 0.366 3.634 17 O -0.387 6.387 18 C -0.160 4.160 19 C -0.074 4.074 20 C -0.249 4.249 21 C 0.381 3.619 22 N -0.420 5.420 23 O -0.420 6.420 24 C -0.076 4.076 25 N -0.118 5.118 26 H 0.259 0.741 27 C -0.179 4.179 28 C 0.027 3.973 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.020 0.980 32 H 0.125 0.875 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.216 0.784 37 H 0.177 0.823 38 H 0.225 0.775 39 H 0.233 0.767 40 H 0.196 0.804 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.060 -20.352 5.789 22.642 hybrid contribution -0.889 0.069 -0.323 0.949 sum -8.949 -20.282 5.465 22.833 Atomic orbital electron populations 1.70294 1.04811 1.24572 1.54757 1.24659 0.95302 0.97801 1.02281 0.86380 0.79517 0.84411 0.77371 1.21836 1.22177 1.20679 1.19416 0.98005 0.86426 1.33759 0.90832 1.44083 1.20141 1.02944 1.65027 1.20705 0.83336 0.98940 0.91195 1.21431 0.98511 0.92136 1.04207 1.20824 0.95066 1.00695 0.98147 1.20592 0.95745 0.87370 0.91095 0.87500 1.46268 1.29038 1.34494 1.27738 1.17036 0.83663 0.82591 0.80132 1.90919 1.26218 1.49618 1.71935 1.20415 0.93613 0.99187 1.02778 1.21120 0.99429 0.94342 0.92540 1.19573 1.00974 1.03634 1.00697 1.17413 0.82108 0.79200 0.83196 1.43677 1.31233 1.34264 1.32863 1.90843 1.26913 1.68217 1.56074 1.22336 0.99858 0.95295 0.90114 1.41775 1.22241 1.24173 1.23584 0.74092 1.22297 0.98411 0.99341 0.97853 1.21152 0.93342 0.84948 0.97827 0.94055 0.90203 0.98036 0.87506 0.94468 0.94141 0.94091 0.78382 0.82299 0.77498 0.76657 0.80374 0.92515 0.92936 0.96405 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 8.06 55.49 0.45 -24.05 16 2 C 0.00 -0.11 4.84 -17.43 -0.08 -0.20 16 3 Si 0.89 21.85 29.63 -169.99 -5.04 16.81 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -6.71 9.58 -15.06 -0.14 -6.86 16 8 H 0.07 2.02 7.82 -52.49 -0.41 1.61 16 9 N -0.60 -14.60 2.29 -171.88 -0.39 -14.99 16 10 C 0.18 4.27 4.96 -4.08 -0.02 4.25 16 11 C -0.12 -2.62 4.77 -28.58 -0.14 -2.75 16 12 C -0.11 -1.88 4.69 -29.79 -0.14 -2.02 16 13 C 0.15 2.76 2.06 -69.21 -0.14 2.62 16 14 H 0.11 2.48 6.92 -51.93 -0.36 2.12 16 15 N -0.73 -10.10 4.93 -56.33 -0.28 -10.38 16 16 C 0.58 9.18 7.61 -12.79 -0.10 9.08 16 17 O -0.51 -10.64 16.52 5.21 0.09 -10.56 16 18 C -0.05 -0.60 6.99 -82.40 -0.58 -1.17 16 19 C -0.05 -0.66 10.37 -39.10 -0.41 -1.06 16 20 C -0.24 -2.47 6.13 -105.02 -0.64 -3.11 16 21 C 0.59 6.48 8.09 -12.54 -0.10 6.38 16 22 N -0.86 -4.76 8.86 30.42 0.27 -4.49 16 23 O -0.54 -8.59 17.76 5.27 0.09 -8.49 16 24 C 0.07 0.40 11.43 -16.50 -0.19 0.22 16 25 N -0.52 -3.75 5.91 -9.30 -0.05 -3.81 16 26 H 0.42 1.63 8.14 -40.82 -0.33 1.30 16 27 C -0.14 -2.45 5.39 -27.12 -0.15 -2.60 16 28 C 0.15 3.24 6.28 -2.77 -0.02 3.22 16 29 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.08 2.09 6.00 -51.93 -0.31 1.77 16 31 H 0.00 0.03 8.07 -51.93 -0.42 -0.39 16 32 H 0.11 2.72 6.25 -51.93 -0.32 2.40 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.63 8.04 -51.93 -0.42 0.21 16 35 H 0.04 0.64 7.36 -51.93 -0.38 0.25 16 36 H 0.38 3.77 7.68 -40.82 -0.31 3.45 16 37 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 38 H 0.40 0.77 7.74 -40.82 -0.32 0.46 16 39 H 0.40 1.84 8.93 -40.82 -0.36 1.48 16 40 H 0.18 0.19 7.44 -52.49 -0.39 -0.20 16 41 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 42 H 0.05 0.86 7.32 -51.93 -0.38 0.48 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 1.18 7.80 -51.93 -0.40 0.77 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -35.60 354.45 -8.30 -43.90 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.94 Total: 4.71 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -2.84 Total: 5.99 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.01 Total: -57.71 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.18 Total: -19.05 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.04 Total: 16.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.60 -8.30 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052825933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.207 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds