Wall clock time and date at job start Tue Mar 31 2020 12:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00392 * 2 1 4 4 H 1.48498 * 109.46984 * 274.99925 * 3 2 1 5 5 H 1.48504 * 109.46848 * 34.99458 * 3 2 1 6 6 H 1.48497 * 109.47221 * 154.99642 * 3 2 1 7 7 C 1.38815 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00226 * 206.21240 * 7 2 1 9 9 N 1.36937 * 120.00231 * 26.49513 * 7 2 1 10 10 C 1.44586 * 118.63915 * 5.37129 * 9 7 2 11 11 C 1.54861 * 109.60117 * 270.70818 * 10 9 7 12 12 C 1.47095 * 110.32672 * 288.73455 * 11 10 9 13 13 C 1.52567 * 114.32313 * 62.80181 * 12 11 10 14 14 H 1.09001 * 109.49290 * 34.95227 * 13 12 11 15 15 N 1.46497 * 109.48837 * 155.00104 * 13 12 11 16 16 C 1.34776 * 119.99724 * 205.00135 * 15 13 12 17 17 O 1.21677 * 120.00452 * 359.97438 * 16 15 13 18 18 C 1.46814 * 120.00063 * 180.02562 * 16 15 13 19 19 C 1.36353 * 125.85384 * 179.97438 * 18 16 15 20 20 C 1.41301 * 107.01105 * 180.02562 * 19 18 16 21 21 C 1.47390 * 126.45994 * 180.02562 * 20 19 18 22 22 N 1.34772 * 120.00070 * 179.97438 * 21 20 19 23 23 O 1.21614 * 120.00274 * 359.97438 * 21 20 19 24 24 C 1.38206 * 107.07724 * 359.97438 * 20 19 18 25 25 N 1.34259 * 108.39352 * 359.73669 * 24 20 19 26 26 H 0.97002 * 125.39360 * 180.29240 * 25 24 20 27 27 C 1.50887 * 109.36137 * 274.99235 * 13 12 11 28 28 C 1.47597 * 118.64534 * 185.11406 * 9 7 2 29 29 H 0.97006 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.44896 * 30.75313 * 10 9 7 31 31 H 1.09002 * 109.44271 * 150.67322 * 10 9 7 32 32 H 1.08998 * 109.32751 * 49.00267 * 11 10 9 33 33 H 1.09004 * 109.32641 * 168.64917 * 11 10 9 34 34 H 1.08997 * 108.51442 * 184.05612 * 12 11 10 35 35 H 1.08998 * 108.51264 * 301.54992 * 12 11 10 36 36 H 0.96996 * 120.00136 * 25.00046 * 15 13 12 37 37 H 1.07999 * 126.48940 * 0.02562 * 19 18 16 38 38 H 0.97001 * 120.00224 * 0.02562 * 22 21 20 39 39 H 0.96999 * 120.00452 * 180.02562 * 22 21 20 40 40 H 1.07997 * 125.80428 * 179.97438 * 24 20 19 41 41 H 1.08997 * 109.36336 * 212.08258 * 27 13 12 42 42 H 1.09001 * 109.36262 * 331.69220 * 27 13 12 43 43 H 1.09002 * 108.94467 * 258.57205 * 28 9 7 44 44 H 1.08999 * 108.94825 * 17.19386 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3921 2.1073 -1.3947 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4119 0.5918 7 6 2.0101 -1.2022 0.0005 8 1 3.0068 -1.2502 0.4137 9 7 1.4333 -2.3261 -0.5280 10 6 0.1506 -2.2036 -1.1839 11 6 -0.9835 -2.3934 -0.1467 12 6 -1.0577 -3.7998 0.2778 13 6 0.1929 -4.3085 0.9884 14 1 0.6242 -3.5050 1.5856 15 7 -0.1630 -5.4296 1.8616 16 6 0.6015 -5.7180 2.9334 17 8 1.5876 -5.0475 3.1756 18 6 0.2452 -6.8419 3.8083 19 6 0.9304 -7.2381 4.9186 20 6 0.2431 -8.3510 5.4532 21 6 0.6162 -9.1152 6.6570 22 7 -0.1376 -10.1601 7.0524 23 8 1.6042 -8.8029 7.2936 24 6 -0.8454 -8.5871 4.6350 25 7 -0.8424 -7.6731 3.6516 26 1 -1.5004 -7.6095 2.9416 27 6 1.1991 -4.7686 -0.0376 28 6 2.1493 -3.6113 -0.4097 29 1 -0.4850 0.8401 -0.0004 30 1 0.0672 -1.2155 -1.6363 31 1 0.0651 -2.9655 -1.9587 32 1 -0.7873 -1.7643 0.7215 33 1 -1.9342 -2.1038 -0.5946 34 1 -1.9082 -3.9142 0.9497 35 1 -1.2311 -4.4184 -0.6027 36 1 -0.9489 -5.9643 1.6685 37 1 1.8282 -6.7869 5.3143 38 1 -0.9255 -10.4095 6.5445 39 1 0.1076 -10.6628 7.8449 40 1 -1.5766 -9.3710 4.7667 41 1 1.7794 -5.5958 0.3710 42 1 0.6749 -5.1045 -0.9324 43 1 2.6315 -3.8367 -1.3608 44 1 2.9151 -3.5203 0.3606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052825933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:51 Heat of formation + Delta-G solvation = -26.253261 kcal Electronic energy + Delta-G solvation = -27052.308744 eV Core-core repulsion = 23197.972865 eV Total energy + Delta-G solvation = -3854.335880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.62393 -40.80141 -39.81314 -39.05655 -36.44468 -34.66166 -34.00811 -33.56158 -32.31923 -31.70820 -30.25878 -27.91950 -25.89985 -25.06741 -24.33022 -23.55124 -21.73925 -21.27504 -20.93401 -20.56383 -19.88082 -18.51451 -17.87422 -17.34834 -17.18778 -17.06544 -16.71568 -16.39943 -15.87760 -15.67885 -15.43841 -15.21630 -14.89335 -14.71920 -14.60428 -14.44127 -14.18320 -13.79001 -13.73041 -13.41306 -13.27228 -13.04196 -12.70081 -12.38376 -12.13818 -11.85825 -11.69308 -11.53139 -11.40325 -11.26059 -11.11432 -11.02976 -10.62781 -10.31254 -10.20808 -10.13231 -9.39940 -8.75985 -7.75318 -5.07362 0.39839 0.77744 1.45933 1.49108 1.56280 1.92392 2.09665 2.20234 2.55129 2.57677 2.78559 3.26298 3.68919 3.79309 3.85983 3.90179 4.08367 4.16028 4.27894 4.36323 4.49586 4.56833 4.68486 4.80626 4.88460 4.89739 4.95262 5.10154 5.20980 5.23394 5.30421 5.36818 5.43474 5.49664 5.54206 5.61417 5.66998 5.89578 5.99450 6.34724 6.36208 6.39361 6.55176 6.63598 7.18319 7.29002 7.47991 8.01777 8.32177 9.20068 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.002741 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.867629 B =10211.943287 C =10751.692666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.045 4.045 3 Si 0.946 3.054 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.264 4.264 8 H 0.057 0.943 9 N -0.610 5.610 10 C 0.185 3.815 11 C -0.111 4.111 12 C -0.103 4.103 13 C 0.165 3.835 14 H 0.046 0.954 15 N -0.705 5.705 16 C 0.579 3.421 17 O -0.578 6.578 18 C -0.066 4.066 19 C -0.075 4.075 20 C -0.271 4.271 21 C 0.590 3.410 22 N -0.827 5.827 23 O -0.609 6.609 24 C 0.129 3.871 25 N -0.500 5.500 26 H 0.443 0.557 27 C -0.126 4.126 28 C 0.150 3.850 29 H 0.245 0.755 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.410 0.590 37 H 0.120 0.880 38 H 0.419 0.581 39 H 0.411 0.589 40 H 0.248 0.752 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.032 0.968 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.899 -25.122 4.517 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.240 4.240 3 Si 0.776 3.224 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.209 1.209 7 C -0.394 4.394 8 H 0.075 0.925 9 N -0.333 5.333 10 C 0.060 3.940 11 C -0.151 4.151 12 C -0.141 4.141 13 C 0.061 3.939 14 H 0.064 0.936 15 N -0.356 5.356 16 C 0.367 3.633 17 O -0.457 6.457 18 C -0.177 4.177 19 C -0.102 4.102 20 C -0.280 4.280 21 C 0.377 3.623 22 N -0.391 5.391 23 O -0.491 6.491 24 C -0.015 4.015 25 N -0.097 5.097 26 H 0.285 0.715 27 C -0.166 4.166 28 C 0.024 3.976 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.138 0.862 38 H 0.252 0.748 39 H 0.242 0.758 40 H 0.264 0.736 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.050 0.950 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.755 -24.127 4.754 27.257 hybrid contribution 0.192 1.137 0.029 1.154 sum -11.564 -22.990 4.783 26.175 Atomic orbital electron populations 1.70472 1.05249 1.24495 1.55008 1.25210 0.96160 0.99865 1.02769 0.85555 0.78281 0.81393 0.77136 1.21458 1.22425 1.20880 1.19495 0.97637 0.88091 1.34137 0.92469 1.44195 1.20784 1.03353 1.65010 1.20636 0.83450 0.97874 0.92069 1.21138 0.97979 0.94221 1.01767 1.20657 0.95253 0.98322 0.99899 1.20161 0.96115 0.87063 0.90600 0.93561 1.45866 1.29614 1.33523 1.26602 1.17491 0.82739 0.82742 0.80341 1.90891 1.29147 1.52117 1.73525 1.19588 0.96079 0.99736 1.02321 1.21044 0.99181 0.96132 0.93812 1.19575 1.02819 1.03567 1.02037 1.17597 0.81704 0.79959 0.82993 1.43384 1.30797 1.32124 1.32769 1.90814 1.29937 1.70296 1.58094 1.23242 0.97866 0.93915 0.86465 1.41674 1.20852 1.22873 1.24268 0.71467 1.22159 0.97838 0.97688 0.98908 1.21245 0.93613 0.85111 0.97608 0.94551 0.93705 0.95380 0.92164 0.93644 0.91745 0.90628 0.75278 0.86177 0.74841 0.75761 0.73558 0.91963 0.89980 0.95017 0.95566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.00 8.06 21.65 0.17 -50.82 16 2 C -0.04 -2.52 4.84 84.86 0.41 -2.11 16 3 Si 0.95 46.44 29.63 68.60 2.03 48.47 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 6 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.26 -14.99 9.58 84.03 0.81 -14.19 16 8 H 0.06 3.35 7.82 -2.91 -0.02 3.33 16 9 N -0.61 -30.50 2.29 -697.70 -1.60 -32.09 16 10 C 0.19 8.57 4.96 87.37 0.43 9.00 16 11 C -0.11 -4.67 4.77 29.39 0.14 -4.53 16 12 C -0.10 -3.29 4.69 28.61 0.13 -3.15 16 13 C 0.16 5.78 2.06 44.16 0.09 5.88 16 14 H 0.05 2.25 6.92 -2.39 -0.02 2.23 16 15 N -0.70 -18.42 4.93 -450.36 -2.22 -20.64 16 16 C 0.58 18.56 7.61 86.49 0.66 19.22 16 17 O -0.58 -25.88 16.52 -4.27 -0.07 -25.95 16 18 C -0.07 -1.56 6.99 40.01 0.28 -1.28 16 19 C -0.08 -2.09 10.37 22.58 0.23 -1.86 16 20 C -0.27 -5.08 6.13 -20.12 -0.12 -5.21 16 21 C 0.59 12.20 8.09 86.65 0.70 12.90 16 22 N -0.83 -6.42 8.86 -175.91 -1.56 -7.97 16 23 O -0.61 -20.12 17.76 -4.08 -0.07 -20.19 16 24 C 0.13 0.85 11.43 84.31 0.96 1.82 16 25 N -0.50 -4.87 5.91 -183.35 -1.08 -5.95 16 26 H 0.44 0.69 8.14 -92.71 -0.75 -0.07 16 27 C -0.13 -4.29 5.39 30.34 0.16 -4.13 16 28 C 0.15 6.42 6.28 86.61 0.54 6.97 16 29 H 0.24 13.52 8.31 -92.70 -0.77 12.75 16 30 H 0.04 2.38 6.00 -2.39 -0.01 2.36 16 31 H 0.03 1.14 8.07 -2.39 -0.02 1.12 16 32 H 0.06 3.15 6.25 -2.39 -0.01 3.14 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.06 1.76 8.04 -2.39 -0.02 1.74 16 35 H 0.08 1.96 7.36 -2.39 -0.02 1.94 16 36 H 0.41 6.34 7.68 -92.71 -0.71 5.63 16 37 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 38 H 0.42 -0.71 7.74 -92.71 -0.72 -1.43 16 39 H 0.41 2.62 8.93 -92.71 -0.83 1.79 16 40 H 0.25 -1.78 7.44 -2.91 -0.02 -1.80 16 41 H 0.06 2.06 7.85 -2.39 -0.02 2.04 16 42 H 0.08 2.35 7.32 -2.39 -0.02 2.33 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.03 1.23 7.80 -2.39 -0.02 1.21 16 Total: -1.00 -89.67 354.45 -0.88 -90.55 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -1.93 Total: 5.27 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 5.43 Total: 19.34 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -6.28 Total: -117.48 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -0.14 Total: -46.14 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -89.67 -0.88 -90.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052825933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.295 kcal (2) G-P(sol) polarization free energy of solvation -89.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds