Wall clock time and date at job start Tue Mar 31 2020 12:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48504 * 109.46961 * 239.99753 * 3 2 1 5 5 H 1.48504 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47438 * 119.99461 * 3 2 1 7 7 C 1.38811 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00201 * 160.43155 * 7 2 1 9 9 N 1.36937 * 120.00177 * 340.43834 * 7 2 1 10 10 C 1.50174 * 120.53457 * 336.70635 * 9 7 2 11 11 C 1.46234 * 107.58984 * 109.60537 * 10 9 7 12 12 C 1.52525 * 114.27645 * 58.37170 * 11 10 9 13 13 C 1.50126 * 105.41806 * 270.59077 * 12 11 10 14 14 H 1.09006 * 109.20482 * 337.39127 * 13 12 11 15 15 N 1.46494 * 109.21343 * 218.03147 * 13 12 11 16 16 C 1.34765 * 120.00168 * 154.99991 * 15 13 12 17 17 O 1.21678 * 120.00261 * 0.02562 * 16 15 13 18 18 C 1.46818 * 120.00178 * 179.97438 * 16 15 13 19 19 C 1.36354 * 125.85094 * 179.71290 * 18 16 15 20 20 C 1.41311 * 107.00669 * 179.85198 * 19 18 16 21 21 C 1.47386 * 126.45694 * 180.13897 * 20 19 18 22 22 N 1.34780 * 119.99885 * 180.30514 * 21 20 19 23 23 O 1.21608 * 120.00592 * 0.30174 * 21 20 19 24 24 C 1.38201 * 107.07618 * 0.41525 * 20 19 18 25 25 N 1.34260 * 108.40008 * 359.74471 * 24 20 19 26 26 H 0.97001 * 125.39876 * 179.97438 * 25 24 20 27 27 C 1.54840 * 110.81313 * 97.68352 * 13 12 11 28 28 C 1.43403 * 120.52131 * 156.59708 * 9 7 2 29 29 H 0.96994 * 119.99906 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.84554 * 350.06008 * 10 9 7 31 31 H 1.08997 * 109.84293 * 229.14622 * 10 9 7 32 32 H 1.08997 * 108.52575 * 179.61747 * 11 10 9 33 33 H 1.09001 * 108.52039 * 297.29040 * 11 10 9 34 34 H 1.09000 * 110.24936 * 29.56948 * 12 11 10 35 35 H 1.09002 * 110.24754 * 151.47897 * 12 11 10 36 36 H 0.97002 * 119.99759 * 334.99871 * 15 13 12 37 37 H 1.07993 * 126.49100 * 0.02562 * 19 18 16 38 38 H 0.96997 * 119.99991 * 359.97438 * 22 21 20 39 39 H 0.97003 * 119.99893 * 180.02562 * 22 21 20 40 40 H 1.08003 * 125.80225 * 179.70835 * 24 20 19 41 41 H 1.08997 * 109.36001 * 81.34430 * 27 13 12 42 42 H 1.09003 * 109.35812 * 201.06466 * 27 13 12 43 43 H 1.09004 * 108.12414 * 149.83118 * 28 9 7 44 44 H 1.09005 * 107.97151 * 33.17584 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0436 -1.2293 -0.3127 9 7 1.3850 -2.3537 0.3981 10 6 0.1857 -2.2982 1.3002 11 6 -0.9814 -2.6841 0.5080 12 6 -0.8834 -4.0714 -0.1181 13 6 -0.2340 -3.8610 -1.4552 14 1 -0.3850 -2.8279 -1.7685 15 7 -0.8499 -4.7572 -2.4367 16 6 -0.8274 -4.4399 -3.7463 17 8 -0.2950 -3.4092 -4.1136 18 6 -1.4442 -5.3384 -4.7301 19 6 -1.4950 -5.1334 -6.0772 20 6 -2.1714 -6.2400 -6.6384 21 6 -2.4608 -6.4569 -8.0672 22 7 -3.1238 -7.5626 -8.4602 23 8 -2.1014 -5.6383 -8.8916 24 6 -2.5159 -7.0772 -5.5942 25 7 -2.0762 -6.5302 -4.4496 26 1 -2.1863 -6.9130 -3.5652 27 6 1.2848 -4.1531 -1.3812 28 6 1.8637 -3.6317 -0.0423 29 1 -0.4850 0.8400 -0.0004 30 1 0.0558 -1.2853 1.6814 31 1 0.3150 -2.9922 2.1307 32 1 -1.8611 -2.6556 1.1509 33 1 -1.1140 -1.9546 -0.2910 34 1 -0.2676 -4.7227 0.5022 35 1 -1.8778 -4.5001 -0.2427 36 1 -1.2740 -5.5790 -2.1440 37 1 -1.0920 -4.2873 -6.6138 38 1 -3.4102 -8.2157 -7.8027 39 1 -3.3139 -7.7055 -9.4006 40 1 -3.0487 -8.0124 -5.6836 41 1 1.4499 -5.2281 -1.4520 42 1 1.7893 -3.6548 -2.2091 43 1 1.6383 -4.3638 0.7332 44 1 2.9473 -3.5687 -0.1423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052825934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:55 Heat of formation + Delta-G solvation = -1.678336 kcal Electronic energy + Delta-G solvation = -27058.795466 eV Core-core repulsion = 23205.525235 eV Total energy + Delta-G solvation = -3853.270231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75451 -39.46434 -38.85659 -37.55254 -34.71319 -33.89453 -32.42015 -31.60144 -31.43000 -30.32254 -29.14256 -26.18974 -24.28411 -23.70904 -23.38426 -22.09334 -20.42471 -20.20630 -19.76665 -19.20216 -18.76526 -17.15838 -16.71446 -16.49362 -15.83899 -15.58455 -15.36494 -14.99827 -14.57915 -14.27664 -14.09931 -13.82884 -13.66673 -13.56907 -13.37662 -13.16334 -12.60636 -12.44258 -12.26096 -11.87898 -11.49197 -11.23407 -10.77023 -10.64283 -10.40412 -10.30187 -10.28459 -10.08660 -9.91500 -9.78686 -9.64132 -9.51371 -9.36691 -9.34740 -8.75669 -8.52561 -8.34887 -6.69304 -5.75282 -3.14120 1.25529 1.69955 2.67901 3.23796 3.27674 3.45067 3.50352 3.50995 3.51814 3.55520 4.46871 4.56374 4.66411 4.83222 5.02337 5.33477 5.40055 5.51637 5.57720 5.69827 5.79272 5.81597 5.97593 6.20001 6.23781 6.25461 6.35943 6.44478 6.49471 6.57063 6.66753 6.81670 6.87341 6.89680 6.92511 7.00071 7.10074 7.15795 7.19066 7.58269 7.74083 7.78306 7.97440 8.14089 8.42830 8.46567 9.22868 9.90196 10.41917 11.32620 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.002858 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.466579 B = 9793.846213 C =10554.724596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.251 4.251 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.121 4.121 13 C 0.156 3.844 14 H 0.106 0.894 15 N -0.727 5.727 16 C 0.578 3.422 17 O -0.511 6.511 18 C -0.047 4.047 19 C -0.050 4.050 20 C -0.238 4.238 21 C 0.594 3.406 22 N -0.857 5.857 23 O -0.543 6.543 24 C 0.065 3.935 25 N -0.523 5.523 26 H 0.421 0.579 27 C -0.151 4.151 28 C 0.162 3.838 29 H 0.253 0.747 30 H 0.091 0.909 31 H 0.006 0.994 32 H 0.030 0.970 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.383 0.617 37 H 0.159 0.841 38 H 0.397 0.603 39 H 0.403 0.597 40 H 0.179 0.821 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 -20.787 -6.013 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.169 4.169 12 C -0.159 4.159 13 C 0.054 3.946 14 H 0.124 0.876 15 N -0.377 5.377 16 C 0.363 3.637 17 O -0.385 6.385 18 C -0.159 4.159 19 C -0.076 4.076 20 C -0.249 4.249 21 C 0.381 3.619 22 N -0.421 5.421 23 O -0.420 6.420 24 C -0.077 4.077 25 N -0.118 5.118 26 H 0.259 0.741 27 C -0.194 4.194 28 C 0.032 3.968 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.024 0.976 32 H 0.049 0.951 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.215 0.785 37 H 0.177 0.823 38 H 0.225 0.775 39 H 0.233 0.767 40 H 0.196 0.804 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.795 -19.173 -6.452 22.059 hybrid contribution -0.259 -0.370 0.294 0.539 sum -9.055 -19.542 -6.159 22.401 Atomic orbital electron populations 1.69934 1.05091 1.25392 1.54112 1.24886 0.95245 0.98250 1.01023 0.86382 0.78982 0.83513 0.78001 1.20970 1.21750 1.21252 1.19158 0.93666 0.85277 1.39896 0.91503 1.44271 1.33691 1.00922 1.52016 1.20159 0.85227 1.00607 0.89873 1.20938 0.98531 0.94914 1.02499 1.21364 0.98542 0.99949 0.96013 1.21344 0.92181 0.94881 0.86227 0.87646 1.46434 1.59234 1.25399 1.06670 1.17073 0.79797 0.85060 0.81775 1.90933 1.44042 1.24344 1.79196 1.20471 1.09350 0.90329 0.95703 1.21125 0.97333 0.98096 0.91026 1.19569 1.13132 0.99770 0.92398 1.17418 0.76481 0.80784 0.87231 1.43679 1.61545 1.24383 1.12452 1.90841 1.52590 1.44562 1.54051 1.22320 1.01364 0.99324 0.84725 1.41771 1.42885 1.17846 1.09275 0.74133 1.23319 0.95137 0.98467 1.02452 1.20358 0.96480 0.88229 0.91734 0.93686 0.89084 0.97611 0.95128 0.87827 0.91840 0.93012 0.78492 0.82339 0.77510 0.76678 0.80410 0.93771 0.92310 0.95387 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.06 9.43 55.49 0.52 -24.54 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 21.99 29.60 -169.99 -5.03 16.96 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.80 9.62 -15.06 -0.14 -6.95 16 8 H 0.07 1.83 7.88 -52.48 -0.41 1.41 16 9 N -0.59 -14.18 2.61 -175.10 -0.46 -14.64 16 10 C 0.16 3.71 5.24 -5.20 -0.03 3.69 16 11 C -0.13 -2.65 5.03 -30.19 -0.15 -2.80 16 12 C -0.12 -2.00 5.33 -28.40 -0.15 -2.15 16 13 C 0.16 2.87 2.22 -68.39 -0.15 2.72 16 14 H 0.11 2.54 6.26 -51.93 -0.33 2.22 16 15 N -0.73 -10.50 4.97 -55.52 -0.28 -10.78 16 16 C 0.58 9.62 7.74 -12.80 -0.10 9.52 16 17 O -0.51 -11.28 16.52 5.21 0.09 -11.19 16 18 C -0.05 -0.61 6.99 -82.40 -0.58 -1.18 16 19 C -0.05 -0.71 10.37 -39.09 -0.41 -1.11 16 20 C -0.24 -2.57 6.13 -105.02 -0.64 -3.22 16 21 C 0.59 6.71 8.09 -12.54 -0.10 6.61 16 22 N -0.86 -5.02 8.86 30.42 0.27 -4.76 16 23 O -0.54 -8.81 17.76 5.27 0.09 -8.72 16 24 C 0.06 0.42 11.43 -16.50 -0.19 0.23 16 25 N -0.52 -3.95 5.91 -9.30 -0.05 -4.01 16 26 H 0.42 1.74 8.14 -40.82 -0.33 1.41 16 27 C -0.15 -2.88 5.98 -24.76 -0.15 -3.03 16 28 C 0.16 3.32 5.17 -4.68 -0.02 3.30 16 29 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.09 2.31 6.05 -51.93 -0.31 2.00 16 31 H 0.01 0.12 8.13 -51.93 -0.42 -0.30 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 2.54 5.29 -51.93 -0.27 2.27 16 34 H 0.06 1.00 6.29 -51.93 -0.33 0.67 16 35 H 0.05 0.72 7.86 -51.93 -0.41 0.31 16 36 H 0.38 3.85 7.56 -40.82 -0.31 3.54 16 37 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 38 H 0.40 0.88 7.74 -40.82 -0.32 0.57 16 39 H 0.40 1.95 8.93 -40.82 -0.36 1.59 16 40 H 0.18 0.24 7.44 -52.48 -0.39 -0.15 16 41 H 0.04 0.72 8.12 -51.93 -0.42 0.29 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.03 0.52 6.89 -51.93 -0.36 0.16 16 44 H 0.03 0.72 7.98 -51.93 -0.41 0.30 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -36.34 354.42 -8.20 -44.53 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.79 Total: 6.15 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -2.90 Total: 5.64 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.01 Total: -58.71 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.18 Total: -19.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.34 -8.20 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052825934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.854 kcal (2) G-P(sol) polarization free energy of solvation -36.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds