Wall clock time and date at job start Tue Mar 31 2020 12:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48504 * 109.46961 * 239.99753 * 3 2 1 5 5 H 1.48504 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47438 * 119.99461 * 3 2 1 7 7 C 1.38811 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00201 * 160.43155 * 7 2 1 9 9 N 1.36937 * 120.00177 * 340.43834 * 7 2 1 10 10 C 1.50174 * 120.53457 * 336.70635 * 9 7 2 11 11 C 1.46234 * 107.58984 * 109.60537 * 10 9 7 12 12 C 1.52525 * 114.27645 * 58.37170 * 11 10 9 13 13 C 1.50126 * 105.41806 * 270.59077 * 12 11 10 14 14 H 1.09006 * 109.20482 * 337.39127 * 13 12 11 15 15 N 1.46494 * 109.21343 * 218.03147 * 13 12 11 16 16 C 1.34765 * 120.00168 * 154.99991 * 15 13 12 17 17 O 1.21678 * 120.00261 * 0.02562 * 16 15 13 18 18 C 1.46818 * 120.00178 * 179.97438 * 16 15 13 19 19 C 1.36354 * 125.85094 * 179.71290 * 18 16 15 20 20 C 1.41311 * 107.00669 * 179.85198 * 19 18 16 21 21 C 1.47386 * 126.45694 * 180.13897 * 20 19 18 22 22 N 1.34780 * 119.99885 * 180.30514 * 21 20 19 23 23 O 1.21608 * 120.00592 * 0.30174 * 21 20 19 24 24 C 1.38201 * 107.07618 * 0.41525 * 20 19 18 25 25 N 1.34260 * 108.40008 * 359.74471 * 24 20 19 26 26 H 0.97001 * 125.39876 * 179.97438 * 25 24 20 27 27 C 1.54840 * 110.81313 * 97.68352 * 13 12 11 28 28 C 1.43403 * 120.52131 * 156.59708 * 9 7 2 29 29 H 0.96994 * 119.99906 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.84554 * 350.06008 * 10 9 7 31 31 H 1.08997 * 109.84293 * 229.14622 * 10 9 7 32 32 H 1.08997 * 108.52575 * 179.61747 * 11 10 9 33 33 H 1.09001 * 108.52039 * 297.29040 * 11 10 9 34 34 H 1.09000 * 110.24936 * 29.56948 * 12 11 10 35 35 H 1.09002 * 110.24754 * 151.47897 * 12 11 10 36 36 H 0.97002 * 119.99759 * 334.99871 * 15 13 12 37 37 H 1.07993 * 126.49100 * 0.02562 * 19 18 16 38 38 H 0.96997 * 119.99991 * 359.97438 * 22 21 20 39 39 H 0.97003 * 119.99893 * 180.02562 * 22 21 20 40 40 H 1.08003 * 125.80225 * 179.70835 * 24 20 19 41 41 H 1.08997 * 109.36001 * 81.34430 * 27 13 12 42 42 H 1.09003 * 109.35812 * 201.06466 * 27 13 12 43 43 H 1.09004 * 108.12414 * 149.83118 * 28 9 7 44 44 H 1.09005 * 107.97151 * 33.17584 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0436 -1.2293 -0.3127 9 7 1.3850 -2.3537 0.3981 10 6 0.1857 -2.2982 1.3002 11 6 -0.9814 -2.6841 0.5080 12 6 -0.8834 -4.0714 -0.1181 13 6 -0.2340 -3.8610 -1.4552 14 1 -0.3850 -2.8279 -1.7685 15 7 -0.8499 -4.7572 -2.4367 16 6 -0.8274 -4.4399 -3.7463 17 8 -0.2950 -3.4092 -4.1136 18 6 -1.4442 -5.3384 -4.7301 19 6 -1.4950 -5.1334 -6.0772 20 6 -2.1714 -6.2400 -6.6384 21 6 -2.4608 -6.4569 -8.0672 22 7 -3.1238 -7.5626 -8.4602 23 8 -2.1014 -5.6383 -8.8916 24 6 -2.5159 -7.0772 -5.5942 25 7 -2.0762 -6.5302 -4.4496 26 1 -2.1863 -6.9130 -3.5652 27 6 1.2848 -4.1531 -1.3812 28 6 1.8637 -3.6317 -0.0423 29 1 -0.4850 0.8400 -0.0004 30 1 0.0558 -1.2853 1.6814 31 1 0.3150 -2.9922 2.1307 32 1 -1.8611 -2.6556 1.1509 33 1 -1.1140 -1.9546 -0.2910 34 1 -0.2676 -4.7227 0.5022 35 1 -1.8778 -4.5001 -0.2427 36 1 -1.2740 -5.5790 -2.1440 37 1 -1.0920 -4.2873 -6.6138 38 1 -3.4102 -8.2157 -7.8027 39 1 -3.3139 -7.7055 -9.4006 40 1 -3.0487 -8.0124 -5.6836 41 1 1.4499 -5.2281 -1.4520 42 1 1.7893 -3.6548 -2.2091 43 1 1.6383 -4.3638 0.7332 44 1 2.9473 -3.5687 -0.1423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052825934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:54 Heat of formation + Delta-G solvation = -32.798949 kcal Electronic energy + Delta-G solvation = -27060.144957 eV Core-core repulsion = 23205.525235 eV Total energy + Delta-G solvation = -3854.619722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.62609 -40.77727 -39.82659 -39.11863 -36.33701 -34.66940 -34.10013 -33.31811 -32.37741 -31.84846 -30.23531 -27.95909 -25.80697 -25.26018 -24.29340 -23.44902 -21.91503 -21.26345 -20.84521 -20.57930 -19.87464 -18.60779 -17.86809 -17.33380 -17.07879 -16.97481 -16.68372 -16.42388 -15.96190 -15.63371 -15.53548 -15.21257 -15.03550 -14.72743 -14.54487 -14.46247 -14.05155 -13.91482 -13.52042 -13.36952 -13.22565 -13.13781 -12.67115 -12.40335 -12.18046 -11.97536 -11.77622 -11.60345 -11.26219 -11.20008 -11.12749 -11.08286 -10.63608 -10.44399 -10.21250 -10.07920 -9.39796 -8.63669 -7.83425 -5.22869 0.39519 0.76957 1.45595 1.46496 1.52844 1.92997 2.13140 2.20347 2.53900 2.56898 2.78072 3.29712 3.63228 3.79700 3.88500 4.02394 4.07891 4.11838 4.27977 4.33663 4.48609 4.63340 4.73220 4.80589 4.87294 4.88263 4.89663 5.05997 5.18434 5.27869 5.28979 5.33838 5.40653 5.48160 5.54934 5.66070 5.67320 5.79306 5.98814 6.21994 6.35570 6.43126 6.56914 6.63469 7.19942 7.21255 7.47460 7.93966 8.40452 9.20389 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.002858 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.466579 B = 9793.846213 C =10554.724596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.044 4.044 3 Si 0.954 3.046 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.262 4.262 8 H 0.056 0.944 9 N -0.603 5.603 10 C 0.166 3.834 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.168 3.832 14 H 0.039 0.961 15 N -0.706 5.706 16 C 0.575 3.425 17 O -0.583 6.583 18 C -0.065 4.065 19 C -0.078 4.078 20 C -0.271 4.271 21 C 0.590 3.410 22 N -0.826 5.826 23 O -0.610 6.610 24 C 0.131 3.869 25 N -0.499 5.499 26 H 0.443 0.557 27 C -0.141 4.141 28 C 0.156 3.844 29 H 0.246 0.754 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.411 0.589 37 H 0.117 0.883 38 H 0.420 0.580 39 H 0.411 0.589 40 H 0.250 0.750 41 H 0.084 0.916 42 H 0.013 0.987 43 H 0.064 0.936 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.502 -26.075 -4.638 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.240 4.240 3 Si 0.783 3.217 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.074 0.926 9 N -0.325 5.325 10 C 0.043 3.957 11 C -0.164 4.164 12 C -0.142 4.142 13 C 0.064 3.936 14 H 0.058 0.942 15 N -0.357 5.357 16 C 0.363 3.637 17 O -0.462 6.462 18 C -0.177 4.177 19 C -0.104 4.104 20 C -0.280 4.280 21 C 0.378 3.622 22 N -0.390 5.390 23 O -0.492 6.492 24 C -0.014 4.014 25 N -0.095 5.095 26 H 0.286 0.714 27 C -0.183 4.183 28 C 0.027 3.973 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.249 0.751 37 H 0.135 0.865 38 H 0.252 0.748 39 H 0.243 0.757 40 H 0.266 0.734 41 H 0.102 0.898 42 H 0.032 0.968 43 H 0.082 0.918 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.906 -24.595 -5.000 27.365 hybrid contribution 0.344 1.152 -0.179 1.216 sum -10.561 -23.443 -5.179 26.229 Atomic orbital electron populations 1.70119 1.05793 1.25104 1.54995 1.25508 0.96054 1.00684 1.01742 0.85551 0.77804 0.80468 0.77833 1.21528 1.22036 1.20277 1.19327 0.93512 0.86943 1.39463 0.92600 1.44445 1.34144 1.01264 1.52608 1.20130 0.85509 0.99386 0.90652 1.20753 0.98305 0.96284 1.01095 1.21268 1.00931 0.97910 0.94067 1.20861 0.92358 0.92381 0.88007 0.94242 1.46036 1.58536 1.25766 1.05364 1.17577 0.78818 0.84588 0.82698 1.90901 1.47271 1.27659 1.80388 1.19591 1.11765 0.92386 0.93915 1.21043 0.98635 0.98632 0.92136 1.19570 1.14882 1.00082 0.93465 1.17594 0.76387 0.81266 0.87001 1.43374 1.59176 1.22827 1.13637 1.90813 1.55635 1.47176 1.55587 1.23254 0.96745 0.99163 0.82196 1.41652 1.41232 1.15653 1.10984 0.71389 1.23188 0.95138 1.00162 0.99849 1.20508 0.95962 0.87531 0.93280 0.94521 0.92749 0.94645 0.93350 0.92533 0.89406 0.89202 0.75150 0.86475 0.74806 0.75749 0.73378 0.89800 0.96757 0.91815 0.95661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.54 9.43 21.65 0.20 -53.33 16 2 C -0.04 -2.50 4.91 84.86 0.42 -2.09 16 3 Si 0.95 47.09 29.60 68.60 2.03 49.12 16 4 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 5 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.26 -14.80 9.62 84.03 0.81 -14.00 16 8 H 0.06 3.20 7.88 -2.91 -0.02 3.18 16 9 N -0.60 -29.51 2.61 -707.88 -1.85 -31.36 16 10 C 0.17 7.46 5.24 83.58 0.44 7.90 16 11 C -0.13 -5.05 5.03 28.35 0.14 -4.91 16 12 C -0.10 -3.13 5.33 29.51 0.16 -2.97 16 13 C 0.17 6.14 2.22 44.69 0.10 6.23 16 14 H 0.04 2.02 6.26 -2.38 -0.01 2.01 16 15 N -0.71 -19.34 4.97 -447.81 -2.23 -21.56 16 16 C 0.58 19.73 7.74 86.49 0.67 20.40 16 17 O -0.58 -28.19 16.52 -4.28 -0.07 -28.26 16 18 C -0.07 -1.64 6.99 40.01 0.28 -1.36 16 19 C -0.08 -2.29 10.37 22.59 0.23 -2.06 16 20 C -0.27 -5.34 6.13 -20.12 -0.12 -5.47 16 21 C 0.59 12.68 8.09 86.65 0.70 13.38 16 22 N -0.83 -6.83 8.86 -175.91 -1.56 -8.39 16 23 O -0.61 -20.74 17.76 -4.06 -0.07 -20.81 16 24 C 0.13 0.94 11.43 84.31 0.96 1.90 16 25 N -0.50 -5.19 5.91 -183.34 -1.08 -6.27 16 26 H 0.44 0.80 8.14 -92.71 -0.75 0.05 16 27 C -0.14 -5.34 5.98 31.87 0.19 -5.15 16 28 C 0.16 6.27 5.17 87.60 0.45 6.73 16 29 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.05 2.83 6.05 -2.39 -0.01 2.82 16 31 H 0.04 1.37 8.13 -2.39 -0.02 1.35 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 2.88 5.29 -2.39 -0.01 2.87 16 34 H 0.09 2.29 6.29 -2.39 -0.02 2.28 16 35 H 0.09 2.05 7.86 -2.39 -0.02 2.03 16 36 H 0.41 6.47 7.56 -92.71 -0.70 5.77 16 37 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.42 -0.56 7.74 -92.71 -0.72 -1.27 16 39 H 0.41 2.82 8.93 -92.71 -0.83 1.99 16 40 H 0.25 -1.74 7.44 -2.91 -0.02 -1.76 16 41 H 0.08 2.48 8.12 -2.39 -0.02 2.46 16 42 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 2.12 6.89 -2.39 -0.02 2.11 16 44 H 0.03 1.05 7.98 -2.38 -0.02 1.03 16 Total: -1.00 -94.14 354.42 -1.10 -95.24 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -1.91 Total: 7.09 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 5.43 Total: 18.54 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -6.51 Total: -120.92 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.14 Total: -49.07 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -94.14 -1.10 -95.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052825934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.446 kcal (2) G-P(sol) polarization free energy of solvation -94.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds