Wall clock time and date at job start Tue Mar 31 2020 13:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30455 * 125.98499 * 2 1 4 4 N 1.39928 * 108.89457 * 180.02562 * 3 2 1 5 5 H 0.97000 * 125.75699 * 180.02562 * 4 3 2 6 6 C 1.34262 * 108.49597 * 359.74869 * 4 3 2 7 7 C 1.38042 * 107.41327 * 0.39697 * 6 4 3 8 8 C 1.47433 * 126.41460 * 179.86658 * 7 6 4 9 9 O 1.21607 * 119.99994 * 179.68882 * 8 7 6 10 10 N 1.34779 * 120.00107 * 359.69162 * 8 7 6 11 11 C 1.46490 * 120.00203 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47474 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.82319 * 59.43096 * 12 11 10 14 14 C 1.54471 * 109.91343 * 180.37932 * 12 11 10 15 15 C 1.55499 * 102.39227 * 140.91823 * 14 12 11 16 16 C 1.53881 * 100.76022 * 327.03014 * 15 14 12 17 17 C 1.52378 * 115.67687 * 263.23651 * 16 15 14 18 18 N 1.47276 * 87.70244 * 218.74148 * 17 16 15 19 19 C 1.36936 * 135.93576 * 205.92145 * 18 17 16 20 20 H 1.08005 * 119.99952 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99801 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00324 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99953 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47114 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47387 * 119.99569 * 23 21 19 26 26 H 1.48498 * 109.47340 * 239.99917 * 23 21 19 27 27 C 1.47273 * 88.12953 * 26.17582 * 18 17 16 28 28 O 1.42413 * 106.67075 * 34.96969 * 16 15 14 29 29 H 1.08992 * 109.46852 * 269.99535 * 1 2 3 30 30 H 1.08993 * 109.47092 * 30.00175 * 1 2 3 31 31 H 1.09002 * 109.46720 * 149.99945 * 1 2 3 32 32 H 1.07998 * 126.29722 * 180.24393 * 6 4 3 33 33 H 0.97001 * 119.99516 * 359.97438 * 10 8 7 34 34 H 1.09003 * 109.47433 * 59.99569 * 11 10 8 35 35 H 1.09000 * 109.47239 * 299.99952 * 11 10 8 36 36 H 1.09003 * 110.81511 * 259.14403 * 14 12 11 37 37 H 1.08997 * 110.82218 * 22.49347 * 14 12 11 38 38 H 1.08997 * 111.16294 * 209.14843 * 15 14 12 39 39 H 1.09004 * 111.15839 * 84.90192 * 15 14 12 40 40 H 1.09001 * 113.51593 * 104.03916 * 17 16 15 41 41 H 1.08996 * 113.51236 * 333.44916 * 17 16 15 42 42 H 0.97007 * 120.00452 * 180.02562 * 22 21 19 43 43 H 1.08999 * 113.51652 * 88.52643 * 27 18 17 44 44 H 1.08999 * 113.51521 * 219.11206 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6111 0.6444 -0.0006 5 1 4.3842 1.2302 -0.0004 6 6 3.6440 -0.6978 0.0046 7 6 2.3374 -1.1431 -0.0006 8 6 1.8918 -2.5485 -0.0004 9 8 0.7041 -2.8097 0.0003 10 7 2.8006 -3.5437 -0.0010 11 6 2.3578 -4.9401 -0.0003 12 6 3.5787 -5.8623 -0.0006 13 1 4.1884 -5.6687 0.8819 14 6 3.1230 -7.3383 -0.0094 15 6 4.1544 -8.0002 -0.9666 16 6 4.4195 -6.8442 -1.9471 17 6 3.6187 -6.8809 -3.2430 18 7 4.8276 -6.4013 -3.9341 19 6 5.0929 -5.6968 -5.0780 20 1 4.2808 -5.3600 -5.7054 21 6 6.4056 -5.4163 -5.4316 22 7 7.3952 -5.8271 -4.6673 23 14 6.7676 -4.4558 -6.9924 24 1 5.4913 -4.1128 -7.6697 25 1 7.4965 -3.2087 -6.6483 26 1 7.6025 -5.2828 -7.9002 27 6 5.6267 -7.0163 -2.8607 28 8 4.3556 -5.6413 -1.1874 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 4.5299 -1.3156 0.0093 33 1 3.7480 -3.3353 -0.0020 34 1 1.7573 -5.1314 -0.8896 35 1 1.7591 -5.1309 0.8903 36 1 3.1887 -7.7699 0.9893 37 1 2.1107 -7.4289 -0.4032 38 1 3.7211 -8.8592 -1.4788 39 1 5.0630 -8.2799 -0.4333 40 1 2.7939 -6.1686 -3.2649 41 1 3.3177 -7.8855 -3.5399 42 1 8.3125 -5.6308 -4.9143 43 1 5.8825 -8.0585 -3.0515 44 1 6.4872 -6.4178 -2.5617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053633890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:07 Heat of formation + Delta-G solvation = 52.634381 kcal Electronic energy + Delta-G solvation = -27148.083704 eV Core-core repulsion = 23297.168649 eV Total energy + Delta-G solvation = -3850.915055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50783 -40.08468 -38.88906 -36.54891 -34.39127 -33.02947 -32.16385 -31.92056 -30.79881 -29.03229 -28.03368 -26.85738 -24.76655 -24.27192 -22.88022 -21.55008 -21.36986 -20.43451 -19.71489 -18.97903 -18.53564 -16.69818 -16.50913 -16.47630 -15.64928 -15.42501 -15.00007 -14.68964 -14.42080 -14.40689 -14.10549 -13.72586 -13.51769 -13.03438 -12.96479 -12.87798 -12.83297 -12.69774 -12.23777 -12.10237 -11.75219 -11.47825 -11.26127 -11.12589 -11.06289 -11.00338 -10.83328 -10.41716 -10.05665 -9.76249 -9.67826 -9.64223 -9.50614 -9.08661 -8.87466 -8.76974 -8.69872 -6.86350 -5.74877 -3.05908 1.38988 2.06960 2.54493 3.29903 3.39349 3.45112 3.47407 3.52589 4.07931 4.39527 4.46335 4.52400 4.67454 4.78753 5.02563 5.04351 5.15813 5.21874 5.31616 5.34668 5.39345 5.49989 5.60055 5.62792 5.69747 5.73323 5.78580 5.87635 5.92594 6.05936 6.14844 6.26374 6.38707 6.40028 6.53787 6.58570 6.67097 6.92202 6.95093 7.20605 7.36718 7.52668 7.68147 7.77849 7.99924 8.39566 9.05665 9.72361 10.64946 11.43087 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.003966 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.431425 B = 7058.281395 C = 8988.628521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.134 3.866 3 N -0.304 5.304 4 N -0.462 5.462 5 H 0.444 0.556 6 C 0.111 3.889 7 C -0.287 4.287 8 C 0.594 3.406 9 O -0.549 6.549 10 N -0.717 5.717 11 C 0.116 3.884 12 C 0.063 3.937 13 H 0.081 0.919 14 C -0.144 4.144 15 C -0.137 4.137 16 C 0.059 3.941 17 C 0.104 3.896 18 N -0.603 5.603 19 C -0.211 4.211 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.163 3.837 28 O -0.331 6.331 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.188 0.812 33 H 0.402 0.598 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.252 0.748 43 H 0.038 0.962 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.370 4.149 15.056 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 N -0.127 5.127 4 N -0.166 5.166 5 H 0.289 0.711 6 C -0.042 4.042 7 C -0.302 4.302 8 C 0.382 3.618 9 O -0.427 6.427 10 N -0.368 5.368 11 C -0.008 4.008 12 C 0.005 3.995 13 H 0.099 0.901 14 C -0.182 4.182 15 C -0.176 4.176 16 C 0.019 3.981 17 C -0.022 4.022 18 N -0.328 5.328 19 C -0.338 4.338 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.037 3.963 28 O -0.249 6.249 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.205 0.795 33 H 0.236 0.764 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.904 5.594 14.712 17.613 hybrid contribution 1.310 -0.262 -0.920 1.622 sum -6.594 5.332 13.792 16.190 Atomic orbital electron populations 1.20348 0.85670 1.04165 1.03453 1.22486 0.97381 0.88691 0.94826 1.77150 0.86288 1.22494 1.26789 1.46087 1.07823 1.05521 1.57126 0.71125 1.23256 0.99230 0.85673 0.96066 1.20304 0.92137 0.94655 1.23147 1.17194 0.85534 0.83494 0.75609 1.90718 1.16335 1.84344 1.51350 1.45666 1.09850 1.05845 1.75446 1.21768 0.96439 0.80067 1.02492 1.23059 0.91892 0.94418 0.90171 0.90112 1.23056 1.00395 0.93956 1.00807 1.22971 0.98929 0.98668 0.96991 1.23332 1.01600 0.82649 0.90563 1.22765 0.92501 0.97109 0.89859 1.45475 1.01076 1.60840 1.25402 1.18961 0.92102 1.25573 0.97212 0.90172 1.24743 0.95313 1.01323 0.99047 1.69830 0.98250 1.50480 1.38269 0.86060 0.77914 0.79294 0.82616 1.20470 1.21768 1.21757 1.22079 0.94035 0.96344 0.83811 1.88373 1.70765 1.32977 1.32809 0.90269 0.91091 0.88476 0.79489 0.76354 0.90923 0.90848 0.90283 0.90275 0.89934 0.90355 0.93860 0.94212 0.93806 0.94399 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.92 36.01 0.36 -0.53 16 2 C 0.13 1.79 7.26 -82.01 -0.60 1.19 16 3 N -0.30 -3.89 12.63 33.90 0.43 -3.47 16 4 N -0.46 -4.50 7.29 30.85 0.22 -4.27 16 5 H 0.44 2.71 8.96 -182.73 -1.64 1.08 16 6 C 0.11 1.12 11.52 -16.56 -0.19 0.93 16 7 C -0.29 -3.79 6.13 -105.07 -0.64 -4.43 16 8 C 0.59 8.75 7.81 -12.52 -0.10 8.65 16 9 O -0.55 -9.46 14.92 5.27 0.08 -9.38 16 10 N -0.72 -9.43 5.46 -61.39 -0.34 -9.77 16 11 C 0.12 1.51 5.24 -4.05 -0.02 1.48 16 12 C 0.06 0.81 3.61 -25.96 -0.09 0.71 16 13 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.14 -1.58 6.56 -24.63 -0.16 -1.75 16 15 C -0.14 -1.83 6.49 -24.94 -0.16 -1.99 16 16 C 0.06 1.09 1.55 -90.81 -0.14 0.95 16 17 C 0.10 2.17 8.25 -7.87 -0.06 2.11 16 18 N -0.60 -15.72 3.79 -184.97 -0.70 -16.42 16 19 C -0.21 -6.05 10.74 -15.06 -0.16 -6.21 16 20 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -27.35 11.52 55.49 0.64 -26.71 16 23 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C 0.16 3.80 6.95 -7.88 -0.05 3.74 16 28 O -0.33 -5.94 10.68 -35.23 -0.38 -6.31 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.24 6.55 -51.93 -0.34 0.90 16 32 H 0.19 1.27 7.46 -52.49 -0.39 0.88 16 33 H 0.40 4.70 7.32 -40.82 -0.30 4.40 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.83 7.85 -51.93 -0.41 0.43 16 38 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.77 7.98 -51.93 -0.41 0.36 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.04 0.87 8.13 -51.93 -0.42 0.45 16 44 H 0.08 2.03 7.17 -51.93 -0.37 1.66 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -36.40 365.33 -9.31 -45.71 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.63 Total: 3.20 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.13 Total: 4.54 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.26 Total: -60.64 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.30 Total: -15.69 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.40 -9.31 -45.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053633890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.348 kcal (2) G-P(sol) polarization free energy of solvation -36.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds