Wall clock time and date at job start Tue Mar 31 2020 13:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30455 * 125.98499 * 2 1 4 4 N 1.39928 * 108.89457 * 180.02562 * 3 2 1 5 5 H 0.97000 * 125.75699 * 180.02562 * 4 3 2 6 6 C 1.34262 * 108.49597 * 359.74869 * 4 3 2 7 7 C 1.38042 * 107.41327 * 0.39697 * 6 4 3 8 8 C 1.47433 * 126.41460 * 179.86658 * 7 6 4 9 9 O 1.21607 * 119.99994 * 179.68882 * 8 7 6 10 10 N 1.34779 * 120.00107 * 359.69162 * 8 7 6 11 11 C 1.46490 * 120.00203 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47474 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.82319 * 59.43096 * 12 11 10 14 14 C 1.54471 * 109.91343 * 180.37932 * 12 11 10 15 15 C 1.55499 * 102.39227 * 140.91823 * 14 12 11 16 16 C 1.53881 * 100.76022 * 327.03014 * 15 14 12 17 17 C 1.52378 * 115.67687 * 263.23651 * 16 15 14 18 18 N 1.47276 * 87.70244 * 218.74148 * 17 16 15 19 19 C 1.36936 * 135.93576 * 205.92145 * 18 17 16 20 20 H 1.08005 * 119.99952 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99801 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00324 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99953 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47114 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47387 * 119.99569 * 23 21 19 26 26 H 1.48498 * 109.47340 * 239.99917 * 23 21 19 27 27 C 1.47273 * 88.12953 * 26.17582 * 18 17 16 28 28 O 1.42413 * 106.67075 * 34.96969 * 16 15 14 29 29 H 1.08992 * 109.46852 * 269.99535 * 1 2 3 30 30 H 1.08993 * 109.47092 * 30.00175 * 1 2 3 31 31 H 1.09002 * 109.46720 * 149.99945 * 1 2 3 32 32 H 1.07998 * 126.29722 * 180.24393 * 6 4 3 33 33 H 0.97001 * 119.99516 * 359.97438 * 10 8 7 34 34 H 1.09003 * 109.47433 * 59.99569 * 11 10 8 35 35 H 1.09000 * 109.47239 * 299.99952 * 11 10 8 36 36 H 1.09003 * 110.81511 * 259.14403 * 14 12 11 37 37 H 1.08997 * 110.82218 * 22.49347 * 14 12 11 38 38 H 1.08997 * 111.16294 * 209.14843 * 15 14 12 39 39 H 1.09004 * 111.15839 * 84.90192 * 15 14 12 40 40 H 1.09001 * 113.51593 * 104.03916 * 17 16 15 41 41 H 1.08996 * 113.51236 * 333.44916 * 17 16 15 42 42 H 0.97007 * 120.00452 * 180.02562 * 22 21 19 43 43 H 1.08999 * 113.51652 * 88.52643 * 27 18 17 44 44 H 1.08999 * 113.51521 * 219.11206 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6111 0.6444 -0.0006 5 1 4.3842 1.2302 -0.0004 6 6 3.6440 -0.6978 0.0046 7 6 2.3374 -1.1431 -0.0006 8 6 1.8918 -2.5485 -0.0004 9 8 0.7041 -2.8097 0.0003 10 7 2.8006 -3.5437 -0.0010 11 6 2.3578 -4.9401 -0.0003 12 6 3.5787 -5.8623 -0.0006 13 1 4.1884 -5.6687 0.8819 14 6 3.1230 -7.3383 -0.0094 15 6 4.1544 -8.0002 -0.9666 16 6 4.4195 -6.8442 -1.9471 17 6 3.6187 -6.8809 -3.2430 18 7 4.8276 -6.4013 -3.9341 19 6 5.0929 -5.6968 -5.0780 20 1 4.2808 -5.3600 -5.7054 21 6 6.4056 -5.4163 -5.4316 22 7 7.3952 -5.8271 -4.6673 23 14 6.7676 -4.4558 -6.9924 24 1 5.4913 -4.1128 -7.6697 25 1 7.4965 -3.2087 -6.6483 26 1 7.6025 -5.2828 -7.9002 27 6 5.6267 -7.0163 -2.8607 28 8 4.3556 -5.6413 -1.1874 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 4.5299 -1.3156 0.0093 33 1 3.7480 -3.3353 -0.0020 34 1 1.7573 -5.1314 -0.8896 35 1 1.7591 -5.1309 0.8903 36 1 3.1887 -7.7699 0.9893 37 1 2.1107 -7.4289 -0.4032 38 1 3.7211 -8.8592 -1.4788 39 1 5.0630 -8.2799 -0.4333 40 1 2.7939 -6.1686 -3.2649 41 1 3.3177 -7.8855 -3.5399 42 1 8.3125 -5.6308 -4.9143 43 1 5.8825 -8.0585 -3.0515 44 1 6.4872 -6.4178 -2.5617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053633890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:07 Heat of formation + Delta-G solvation = 24.752210 kcal Electronic energy + Delta-G solvation = -27149.292766 eV Core-core repulsion = 23297.168649 eV Total energy + Delta-G solvation = -3852.124117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.41857 -41.43205 -40.04435 -38.06216 -35.58811 -34.15173 -33.93060 -33.08439 -31.85267 -30.37417 -29.02667 -28.45368 -26.51250 -25.60241 -24.02545 -23.04739 -22.43609 -21.41663 -20.70206 -20.44030 -19.44609 -18.70036 -17.66378 -17.48963 -16.91510 -16.70391 -16.43491 -16.19245 -15.68121 -15.48348 -15.29540 -15.15753 -14.84606 -14.60985 -14.15709 -14.01238 -13.92788 -13.73460 -13.53831 -13.16271 -13.07493 -12.96850 -12.84889 -12.64765 -12.50229 -12.26642 -12.09006 -12.02727 -11.62013 -11.28765 -11.20486 -10.95502 -10.86195 -10.54933 -10.21066 -10.14490 -9.73610 -8.91100 -7.90685 -5.22543 0.51149 1.07086 1.43124 1.43924 1.54270 1.77579 2.27222 2.45842 2.47144 2.84975 3.31556 3.46513 3.49240 3.58503 3.74337 3.81827 3.90522 3.99708 4.19014 4.27863 4.30173 4.45137 4.52455 4.64211 4.66405 4.75158 4.76355 4.86610 4.90238 4.95726 4.98215 5.02336 5.04935 5.15961 5.24144 5.32877 5.37673 5.44905 5.52253 5.53408 5.93512 6.21870 6.42022 6.45147 6.67184 6.91623 7.32195 7.59581 8.60859 9.27082 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.003966 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.431425 B = 7058.281395 C = 8988.628521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.118 3.882 3 N -0.325 5.325 4 N -0.448 5.448 5 H 0.460 0.540 6 C 0.133 3.867 7 C -0.321 4.321 8 C 0.591 3.409 9 O -0.582 6.582 10 N -0.713 5.713 11 C 0.119 3.881 12 C 0.061 3.939 13 H 0.107 0.893 14 C -0.133 4.133 15 C -0.129 4.129 16 C 0.082 3.918 17 C 0.103 3.897 18 N -0.638 5.638 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.062 4.062 22 N -0.950 5.950 23 Si 0.976 3.024 24 H -0.270 1.270 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.159 3.841 28 O -0.361 6.361 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.409 0.591 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.035 0.965 41 H 0.061 0.939 42 H 0.249 0.751 43 H 0.038 0.962 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.378 3.813 16.473 18.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 N -0.148 5.148 4 N -0.154 5.154 5 H 0.308 0.692 6 C -0.022 4.022 7 C -0.336 4.336 8 C 0.379 3.621 9 O -0.464 6.464 10 N -0.363 5.363 11 C -0.005 4.005 12 C 0.004 3.996 13 H 0.125 0.875 14 C -0.171 4.171 15 C -0.167 4.167 16 C 0.041 3.959 17 C -0.023 4.023 18 N -0.363 5.363 19 C -0.356 4.356 20 H 0.094 0.906 21 C -0.255 4.255 22 N -0.599 5.599 23 Si 0.804 3.196 24 H -0.195 1.195 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.033 3.967 28 O -0.280 6.280 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.239 0.761 33 H 0.245 0.755 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.914 5.265 16.152 18.741 hybrid contribution 1.324 -0.133 -1.335 1.884 sum -6.590 5.132 14.818 17.010 Atomic orbital electron populations 1.20323 0.85173 1.03814 1.04017 1.22767 0.98173 0.88999 0.94985 1.77091 0.87486 1.22702 1.27565 1.46137 1.07591 1.05845 1.55788 0.69153 1.23696 0.99239 0.85869 0.93404 1.20357 0.93571 0.93950 1.25755 1.17452 0.85248 0.84323 0.75042 1.90691 1.17668 1.84926 1.53114 1.45660 1.10057 1.05823 1.74797 1.21775 0.96548 0.80025 1.02163 1.23337 0.91618 0.95758 0.88914 0.87539 1.23086 0.99736 0.92007 1.02247 1.22956 1.00511 0.97051 0.96198 1.22908 0.96946 0.85220 0.90846 1.22968 0.91044 0.97413 0.90868 1.45858 1.03946 1.61241 1.25301 1.19281 0.92312 1.25832 0.98204 0.90609 1.25535 0.95137 1.02718 1.02154 1.70008 0.98232 1.51811 1.39803 0.85056 0.77796 0.77732 0.79032 1.19506 1.21662 1.21559 1.22071 0.94514 0.95190 0.84927 1.88336 1.71803 1.33316 1.34558 0.89256 0.89903 0.90213 0.76145 0.75527 0.93449 0.88944 0.86537 0.89675 0.88451 0.89036 0.94671 0.92195 0.94247 0.94485 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.73 9.92 71.24 0.71 -1.03 16 2 C 0.12 3.12 7.26 43.52 0.32 3.44 16 3 N -0.32 -8.04 12.63 -46.67 -0.59 -8.63 16 4 N -0.45 -7.94 7.29 -56.32 -0.41 -8.36 16 5 H 0.46 4.63 8.96 -213.43 -1.91 2.72 16 6 C 0.13 2.43 11.52 84.27 0.97 3.40 16 7 C -0.32 -8.27 6.13 -20.15 -0.12 -8.40 16 8 C 0.59 17.25 7.81 86.67 0.68 17.93 16 9 O -0.58 -20.38 14.92 -4.05 -0.06 -20.44 16 10 N -0.71 -17.95 5.46 -466.38 -2.55 -20.50 16 11 C 0.12 2.88 5.24 86.38 0.45 3.33 16 12 C 0.06 1.39 3.61 31.09 0.11 1.50 16 13 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 14 C -0.13 -2.38 6.56 31.95 0.21 -2.17 16 15 C -0.13 -3.02 6.49 31.75 0.21 -2.82 16 16 C 0.08 2.92 1.55 -10.91 -0.02 2.91 16 17 C 0.10 4.24 8.25 83.48 0.69 4.93 16 18 N -0.64 -33.85 3.79 -740.55 -2.81 -36.66 16 19 C -0.23 -13.34 10.74 84.03 0.90 -12.44 16 20 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 21 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 22 N -0.95 -57.78 11.52 21.65 0.25 -57.53 16 23 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 C 0.16 7.50 6.95 83.47 0.58 8.08 16 28 O -0.36 -12.54 10.68 -148.98 -1.59 -14.13 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.08 2.13 6.55 -2.39 -0.02 2.11 16 32 H 0.22 2.36 7.46 -2.91 -0.02 2.33 16 33 H 0.41 8.91 7.32 -92.71 -0.68 8.23 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.47 7.85 -2.39 -0.02 1.45 16 38 H 0.10 2.04 7.93 -2.39 -0.02 2.02 16 39 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.06 2.24 7.98 -2.39 -0.02 2.22 16 42 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 43 H 0.04 1.73 8.13 -2.39 -0.02 1.71 16 44 H 0.04 2.11 7.17 -2.39 -0.02 2.09 16 Total: -1.00 -82.15 365.33 -1.13 -83.28 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -1.55 Total: 18.73 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 6.15 Total: 15.52 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -6.10 Total: -131.67 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.65 Total: -34.57 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -82.15 -1.13 -83.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053633890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.032 kcal (2) G-P(sol) polarization free energy of solvation -82.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds